data_2BML # _model_server_result.job_id LcAsErEpdwk4hmW4YuW9OA _model_server_result.datetime_utc '2024-12-26 23:18:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bml # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1321}' # _entry.id 2BML # _exptl.entry_id 2BML _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BML _cell.length_a 101.67 _cell.length_b 94.48 _cell.length_c 38.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BML _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 268 n n O1 HO1 PG4 sing 269 n n C1 C2 PG4 sing 270 n n C1 H11 PG4 sing 271 n n C1 H12 PG4 sing 272 n n C2 O2 PG4 sing 273 n n C2 H21 PG4 sing 274 n n C2 H22 PG4 sing 275 n n O2 C3 PG4 sing 276 n n C3 C4 PG4 sing 277 n n C3 H31 PG4 sing 278 n n C3 H32 PG4 sing 279 n n C4 O3 PG4 sing 280 n n C4 H41 PG4 sing 281 n n C4 H42 PG4 sing 282 n n O3 C5 PG4 sing 283 n n C5 C6 PG4 sing 284 n n C5 H51 PG4 sing 285 n n C5 H52 PG4 sing 286 n n C6 O4 PG4 sing 287 n n C6 H61 PG4 sing 288 n n C6 H62 PG4 sing 289 n n O4 C7 PG4 sing 290 n n C7 C8 PG4 sing 291 n n C7 H71 PG4 sing 292 n n C7 H72 PG4 sing 293 n n C8 O5 PG4 sing 294 n n C8 H81 PG4 sing 295 n n C8 H82 PG4 sing 296 n n O5 HO5 PG4 sing 297 n n # _atom_sites.entry_id 2BML _atom_sites.fract_transf_matrix[1][1] 0.009836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TRS A 1 1319 1319 TRS TRS . D 2 TRS A 1 1320 1320 TRS TRS . E 3 P6G A 1 1321 1321 P6G P6G . F 4 XED B 1 1319 1319 XED XED . G 3 P6G B 1 1320 1320 P6G P6G . H 5 PG4 B 1 1321 1321 PG4 PG4 . I 6 SO4 B 1 1322 1322 SO4 SO4 . J 6 SO4 B 1 1323 1323 SO4 SO4 . K 6 SO4 B 1 1324 1324 SO4 SO4 . L 7 HOH A 1 2001 2001 HOH HOH . L 7 HOH A 2 2002 2002 HOH HOH . L 7 HOH A 3 2003 2003 HOH HOH . L 7 HOH A 4 2004 2004 HOH HOH . L 7 HOH A 5 2005 2005 HOH HOH . L 7 HOH A 6 2006 2006 HOH HOH . L 7 HOH A 7 2007 2007 HOH HOH . L 7 HOH A 8 2008 2008 HOH HOH . L 7 HOH A 9 2009 2009 HOH HOH . L 7 HOH A 10 2010 2010 HOH HOH . L 7 HOH A 11 2011 2011 HOH HOH . L 7 HOH A 12 2012 2012 HOH HOH . L 7 HOH A 13 2013 2013 HOH HOH . L 7 HOH A 14 2014 2014 HOH HOH . L 7 HOH A 15 2015 2015 HOH HOH . L 7 HOH A 16 2016 2016 HOH HOH . L 7 HOH A 17 2017 2017 HOH HOH . L 7 HOH A 18 2018 2018 HOH HOH . L 7 HOH A 19 2019 2019 HOH HOH . M 7 HOH B 1 2001 2001 HOH HOH . M 7 HOH B 2 2002 2002 HOH HOH . M 7 HOH B 3 2003 2003 HOH HOH . M 7 HOH B 4 2004 2004 HOH HOH . M 7 HOH B 5 2005 2005 HOH HOH . M 7 HOH B 6 2006 2006 HOH HOH . M 7 HOH B 7 2007 2007 HOH HOH . M 7 HOH B 8 2008 2008 HOH HOH . M 7 HOH B 9 2009 2009 HOH HOH . M 7 HOH B 10 2010 2010 HOH HOH . M 7 HOH B 11 2011 2011 HOH HOH . M 7 HOH B 12 2012 2012 HOH HOH . M 7 HOH B 13 2013 2013 HOH HOH . M 7 HOH B 14 2014 2014 HOH HOH . M 7 HOH B 15 2015 2015 HOH HOH . M 7 HOH B 16 2016 2016 HOH HOH . M 7 HOH B 17 2017 2017 HOH HOH . M 7 HOH B 18 2018 2018 HOH HOH . M 7 HOH B 19 2019 2019 HOH HOH . M 7 HOH B 20 2020 2020 HOH HOH . M 7 HOH B 21 2021 2021 HOH HOH . M 7 HOH B 22 2022 2022 HOH HOH . M 7 HOH B 23 2023 2023 HOH HOH . M 7 HOH B 24 2024 2024 HOH HOH . M 7 HOH B 25 2025 2025 HOH HOH . M 7 HOH B 26 2026 2026 HOH HOH . M 7 HOH B 27 2027 2027 HOH HOH . M 7 HOH B 28 2028 2028 HOH HOH . M 7 HOH B 29 2029 2029 HOH HOH . M 7 HOH B 30 2030 2030 HOH HOH . M 7 HOH B 31 2031 2031 HOH HOH . M 7 HOH B 32 2032 2032 HOH HOH . M 7 HOH B 33 2033 2033 HOH HOH . M 7 HOH B 34 2034 2034 HOH HOH . M 7 HOH B 35 2035 2035 HOH HOH . M 7 HOH B 36 2036 2036 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . H 5 45.08 30.794 22.855 1 69.89 ? O1 PG4 1321 B 1 HETATM 2 C C1 PG4 . . . H 5 46.435 30.791 23.374 1 70.5 ? C1 PG4 1321 B 1 HETATM 3 C C2 PG4 . . . H 5 46.868 32.227 23.609 1 70.28 ? C2 PG4 1321 B 1 HETATM 4 O O2 PG4 . . . H 5 48.109 32.425 22.88 1 70.01 ? O2 PG4 1321 B 1 HETATM 5 C C3 PG4 . . . H 5 48.077 33.698 22.223 1 69.03 ? C3 PG4 1321 B 1 HETATM 6 C C4 PG4 . . . H 5 48.578 33.615 20.796 1 68.31 ? C4 PG4 1321 B 1 HETATM 7 O O3 PG4 . . . H 5 47.711 34.502 20.078 1 68.1 ? O3 PG4 1321 B 1 HETATM 8 C C5 PG4 . . . H 5 48.035 34.563 18.664 1 66.85 ? C5 PG4 1321 B 1 HETATM 9 C C6 PG4 . . . H 5 47.073 35.518 17.979 1 65.3 ? C6 PG4 1321 B 1 HETATM 10 O O4 PG4 . . . H 5 47.752 36.533 17.138 1 64.52 ? O4 PG4 1321 B 1 HETATM 11 C C7 PG4 . . . H 5 47.85 37.834 17.706 1 64.71 ? C7 PG4 1321 B 1 HETATM 12 C C8 PG4 . . . H 5 49.347 38.18 17.638 1 63.15 ? C8 PG4 1321 B 1 HETATM 13 O O5 PG4 . . . H 5 49.497 39.339 16.847 1 59.84 ? O5 PG4 1321 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #