data_2BN4 # _model_server_result.job_id H7ALbP3TXfKQSZ9fftaHvQ _model_server_result.datetime_utc '2024-10-19 09:40:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bn4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":751}' # _entry.id 2BN4 # _exptl.entry_id 2BN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BN4 _cell.length_a 78.14 _cell.length_b 77.843 _cell.length_c 261.495 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 174 n n N1 C10 FMN doub 175 n n C2 O2 FMN doub 176 n n C2 N3 FMN sing 177 n n N3 C4 FMN sing 178 n n N3 HN3 FMN sing 179 n n C4 O4 FMN doub 180 n n C4 C4A FMN sing 181 n n C4A N5 FMN doub 182 n n C4A C10 FMN sing 183 n n N5 C5A FMN sing 184 n n C5A C6 FMN doub 185 n y C5A C9A FMN sing 186 n y C6 C7 FMN sing 187 n y C6 H6 FMN sing 188 n n C7 C7M FMN sing 189 n n C7 C8 FMN doub 190 n y C7M HM71 FMN sing 191 n n C7M HM72 FMN sing 192 n n C7M HM73 FMN sing 193 n n C8 C8M FMN sing 194 n n C8 C9 FMN sing 195 n y C8M HM81 FMN sing 196 n n C8M HM82 FMN sing 197 n n C8M HM83 FMN sing 198 n n C9 C9A FMN doub 199 n y C9 H9 FMN sing 200 n n C9A N10 FMN sing 201 n n N10 C10 FMN sing 202 n n N10 C1' FMN sing 203 n n C1' C2' FMN sing 204 n n C1' "H1'1" FMN sing 205 n n C1' "H1'2" FMN sing 206 n n C2' O2' FMN sing 207 n n C2' C3' FMN sing 208 n n C2' H2' FMN sing 209 n n O2' HO2' FMN sing 210 n n C3' O3' FMN sing 211 n n C3' C4' FMN sing 212 n n C3' H3' FMN sing 213 n n O3' HO3' FMN sing 214 n n C4' O4' FMN sing 215 n n C4' C5' FMN sing 216 n n C4' H4' FMN sing 217 n n O4' HO4' FMN sing 218 n n C5' O5' FMN sing 219 n n C5' "H5'1" FMN sing 220 n n C5' "H5'2" FMN sing 221 n n O5' P FMN sing 222 n n P O1P FMN doub 223 n n P O2P FMN sing 224 n n P O3P FMN sing 225 n n O2P HOP2 FMN sing 226 n n O3P HOP3 FMN sing 227 n n # _atom_sites.entry_id 2BN4 _atom_sites.fract_transf_matrix[1][1] 0.012798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 750 750 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 753 753 NAP NAP . F 2 FAD B 1 750 750 FAD FAD . G 3 FMN B 1 751 751 FMN FMN . H 4 NAP B 1 753 753 NAP NAP . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . I 5 HOH A 31 2031 2031 HOH HOH . I 5 HOH A 32 2032 2032 HOH HOH . I 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . J 5 HOH B 14 2014 2014 HOH HOH . J 5 HOH B 15 2015 2015 HOH HOH . J 5 HOH B 16 2016 2016 HOH HOH . J 5 HOH B 17 2017 2017 HOH HOH . J 5 HOH B 18 2018 2018 HOH HOH . J 5 HOH B 19 2019 2019 HOH HOH . J 5 HOH B 20 2020 2020 HOH HOH . J 5 HOH B 21 2021 2021 HOH HOH . J 5 HOH B 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . G 3 86.338 26.153 258.679 1 59.67 ? N1 FMN 751 B 1 HETATM 2 C C2 FMN . . . G 3 85.945 24.87 258.646 1 59.34 ? C2 FMN 751 B 1 HETATM 3 O O2 FMN . . . G 3 86.559 24.058 257.986 1 58.63 ? O2 FMN 751 B 1 HETATM 4 N N3 FMN . . . G 3 84.833 24.565 259.399 1 61.7 ? N3 FMN 751 B 1 HETATM 5 C C4 FMN . . . G 3 84.081 25.452 260.188 1 63.97 ? C4 FMN 751 B 1 HETATM 6 O O4 FMN . . . G 3 83.103 25.021 260.81 1 64.76 ? O4 FMN 751 B 1 HETATM 7 C C4A FMN . . . G 3 84.542 26.806 260.191 1 63.79 ? C4A FMN 751 B 1 HETATM 8 N N5 FMN . . . G 3 83.815 27.691 260.966 1 63.75 ? N5 FMN 751 B 1 HETATM 9 C C5A FMN . . . G 3 84.317 28.976 260.925 1 64.57 ? C5A FMN 751 B 1 HETATM 10 C C6 FMN . . . G 3 83.605 29.942 261.708 1 66.34 ? C6 FMN 751 B 1 HETATM 11 C C7 FMN . . . G 3 83.993 31.277 261.763 1 66.68 ? C7 FMN 751 B 1 HETATM 12 C C7M FMN . . . G 3 83.187 32.254 262.611 1 66.8 ? C7M FMN 751 B 1 HETATM 13 C C8 FMN . . . G 3 85.151 31.702 261.009 1 65.67 ? C8 FMN 751 B 1 HETATM 14 C C8M FMN . . . G 3 85.643 33.133 261.009 1 63.93 ? C8M FMN 751 B 1 HETATM 15 C C9 FMN . . . G 3 85.841 30.801 260.26 1 64.57 ? C9 FMN 751 B 1 HETATM 16 C C9A FMN . . . G 3 85.471 29.431 260.179 1 64.23 ? C9A FMN 751 B 1 HETATM 17 N N10 FMN . . . G 3 86.175 28.447 259.392 1 62.45 ? N10 FMN 751 B 1 HETATM 18 C C10 FMN . . . G 3 85.694 27.087 259.4 1 62.32 ? C10 FMN 751 B 1 HETATM 19 C C1' FMN . . . G 3 87.366 28.829 258.589 1 60.98 ? C1' FMN 751 B 1 HETATM 20 C C2' FMN . . . G 3 87.106 29.577 257.273 1 59.48 ? C2' FMN 751 B 1 HETATM 21 O O2' FMN . . . G 3 86.243 28.863 256.39 1 60.47 ? O2' FMN 751 B 1 HETATM 22 C C3' FMN . . . G 3 88.431 29.924 256.537 1 56.11 ? C3' FMN 751 B 1 HETATM 23 O O3' FMN . . . G 3 89.248 30.853 257.245 1 54.8 ? O3' FMN 751 B 1 HETATM 24 C C4' FMN . . . G 3 88.247 30.531 255.122 1 53 ? C4' FMN 751 B 1 HETATM 25 O O4' FMN . . . G 3 89.522 30.82 254.594 1 52.98 ? O4' FMN 751 B 1 HETATM 26 C C5' FMN . . . G 3 87.368 31.822 255.096 1 51.17 ? C5' FMN 751 B 1 HETATM 27 O O5' FMN . . . G 3 87.194 32.344 253.747 1 51.98 ? O5' FMN 751 B 1 HETATM 28 P P FMN . . . G 3 86.355 33.643 253.303 1 50.95 ? P FMN 751 B 1 HETATM 29 O O1P FMN . . . G 3 87.285 34.753 253.511 1 51.9 ? O1P FMN 751 B 1 HETATM 30 O O2P FMN . . . G 3 86.086 33.328 251.908 1 49.28 ? O2P FMN 751 B 1 HETATM 31 O O3P FMN . . . G 3 85.149 33.643 254.131 1 49.04 ? O3P FMN 751 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #