data_2BN4 # _model_server_result.job_id 1hyXL_mBLn36AaNKuEzd8A _model_server_result.datetime_utc '2024-10-19 09:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bn4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":753}' # _entry.id 2BN4 # _exptl.entry_id 2BN4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BN4 _cell.length_a 78.14 _cell.length_b 77.843 _cell.length_c 261.495 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BN4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 382 n n PA O2A NAP sing 383 n n PA O5B NAP sing 384 n n PA O3 NAP sing 385 n n O2A HOA2 NAP sing 386 n n O5B C5B NAP sing 387 n n C5B C4B NAP sing 388 n n C5B H51A NAP sing 389 n n C5B H52A NAP sing 390 n n C4B O4B NAP sing 391 n n C4B C3B NAP sing 392 n n C4B H4B NAP sing 393 n n O4B C1B NAP sing 394 n n C3B O3B NAP sing 395 n n C3B C2B NAP sing 396 n n C3B H3B NAP sing 397 n n O3B HO3A NAP sing 398 n n C2B O2B NAP sing 399 n n C2B C1B NAP sing 400 n n C2B H2B NAP sing 401 n n O2B P2B NAP sing 402 n n C1B N9A NAP sing 403 n n C1B H1B NAP sing 404 n n N9A C8A NAP sing 405 n y N9A C4A NAP sing 406 n y C8A N7A NAP doub 407 n y C8A H8A NAP sing 408 n n N7A C5A NAP sing 409 n y C5A C6A NAP sing 410 n y C5A C4A NAP doub 411 n y C6A N6A NAP sing 412 n n C6A N1A NAP doub 413 n y N6A H61A NAP sing 414 n n N6A H62A NAP sing 415 n n N1A C2A NAP sing 416 n y C2A N3A NAP doub 417 n y C2A H2A NAP sing 418 n n N3A C4A NAP sing 419 n y O3 PN NAP sing 420 n n PN O1N NAP doub 421 n n PN O2N NAP sing 422 n n PN O5D NAP sing 423 n n O5D C5D NAP sing 424 n n C5D C4D NAP sing 425 n n C5D H51N NAP sing 426 n n C5D H52N NAP sing 427 n n C4D O4D NAP sing 428 n n C4D C3D NAP sing 429 n n C4D H4D NAP sing 430 n n O4D C1D NAP sing 431 n n C3D O3D NAP sing 432 n n C3D C2D NAP sing 433 n n C3D H3D NAP sing 434 n n O3D HO3N NAP sing 435 n n C2D O2D NAP sing 436 n n C2D C1D NAP sing 437 n n C2D H2D NAP sing 438 n n O2D HO2N NAP sing 439 n n C1D N1N NAP sing 440 n n C1D H1D NAP sing 441 n n N1N C2N NAP sing 442 n y N1N C6N NAP doub 443 n y C2N C3N NAP doub 444 n y C2N H2N NAP sing 445 n n C3N C7N NAP sing 446 n n C3N C4N NAP sing 447 n y C7N O7N NAP doub 448 n n C7N N7N NAP sing 449 n n N7N H71N NAP sing 450 n n N7N H72N NAP sing 451 n n C4N C5N NAP doub 452 n y C4N H4N NAP sing 453 n n C5N C6N NAP sing 454 n y C5N H5N NAP sing 455 n n C6N H6N NAP sing 456 n n P2B O1X NAP doub 457 n n P2B O2X NAP sing 458 n n P2B O3X NAP sing 459 n n O2X HOP2 NAP sing 460 n n O3X HOP3 NAP sing 461 n n # _atom_sites.entry_id 2BN4 _atom_sites.fract_transf_matrix[1][1] 0.012798 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012846 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003824 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 750 750 FAD FAD . D 3 FMN A 1 751 751 FMN FMN . E 4 NAP A 1 753 753 NAP NAP . F 2 FAD B 1 750 750 FAD FAD . G 3 FMN B 1 751 751 FMN FMN . H 4 NAP B 1 753 753 NAP NAP . I 5 HOH A 1 2001 2001 HOH HOH . I 5 HOH A 2 2002 2002 HOH HOH . I 5 HOH A 3 2003 2003 HOH HOH . I 5 HOH A 4 2004 2004 HOH HOH . I 5 HOH A 5 2005 2005 HOH HOH . I 5 HOH A 6 2006 2006 HOH HOH . I 5 HOH A 7 2007 2007 HOH HOH . I 5 HOH A 8 2008 2008 HOH HOH . I 5 HOH A 9 2009 2009 HOH HOH . I 5 HOH A 10 2010 2010 HOH HOH . I 5 HOH A 11 2011 2011 HOH HOH . I 5 HOH A 12 2012 2012 HOH HOH . I 5 HOH A 13 2013 2013 HOH HOH . I 5 HOH A 14 2014 2014 HOH HOH . I 5 HOH A 15 2015 2015 HOH HOH . I 5 HOH A 16 2016 2016 HOH HOH . I 5 HOH A 17 2017 2017 HOH HOH . I 5 HOH A 18 2018 2018 HOH HOH . I 5 HOH A 19 2019 2019 HOH HOH . I 5 HOH A 20 2020 2020 HOH HOH . I 5 HOH A 21 2021 2021 HOH HOH . I 5 HOH A 22 2022 2022 HOH HOH . I 5 HOH A 23 2023 2023 HOH HOH . I 5 HOH A 24 2024 2024 HOH HOH . I 5 HOH A 25 2025 2025 HOH HOH . I 5 HOH A 26 2026 2026 HOH HOH . I 5 HOH A 27 2027 2027 HOH HOH . I 5 HOH A 28 2028 2028 HOH HOH . I 5 HOH A 29 2029 2029 HOH HOH . I 5 HOH A 30 2030 2030 HOH HOH . I 5 HOH A 31 2031 2031 HOH HOH . I 5 HOH A 32 2032 2032 HOH HOH . I 5 HOH A 33 2033 2033 HOH HOH . J 5 HOH B 1 2001 2001 HOH HOH . J 5 HOH B 2 2002 2002 HOH HOH . J 5 HOH B 3 2003 2003 HOH HOH . J 5 HOH B 4 2004 2004 HOH HOH . J 5 HOH B 5 2005 2005 HOH HOH . J 5 HOH B 6 2006 2006 HOH HOH . J 5 HOH B 7 2007 2007 HOH HOH . J 5 HOH B 8 2008 2008 HOH HOH . J 5 HOH B 9 2009 2009 HOH HOH . J 5 HOH B 10 2010 2010 HOH HOH . J 5 HOH B 11 2011 2011 HOH HOH . J 5 HOH B 12 2012 2012 HOH HOH . J 5 HOH B 13 2013 2013 HOH HOH . J 5 HOH B 14 2014 2014 HOH HOH . J 5 HOH B 15 2015 2015 HOH HOH . J 5 HOH B 16 2016 2016 HOH HOH . J 5 HOH B 17 2017 2017 HOH HOH . J 5 HOH B 18 2018 2018 HOH HOH . J 5 HOH B 19 2019 2019 HOH HOH . J 5 HOH B 20 2020 2020 HOH HOH . J 5 HOH B 21 2021 2021 HOH HOH . J 5 HOH B 22 2022 2022 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . H 4 96.699 34.994 273.388 1 96.77 ? PA NAP 753 B 1 HETATM 2 O O1A NAP . . . H 4 96.782 36.219 274.253 1 96.66 ? O1A NAP 753 B 1 HETATM 3 O O2A NAP . . . H 4 97.934 34.241 273.031 1 96.43 ? O2A NAP 753 B 1 HETATM 4 O O5B NAP . . . H 4 95.7 33.903 273.974 1 96.02 ? O5B NAP 753 B 1 HETATM 5 C C5B NAP . . . H 4 94.995 34.14 275.176 1 91.86 ? C5B NAP 753 B 1 HETATM 6 C C4B NAP . . . H 4 95.195 32.988 276.12 1 90.5 ? C4B NAP 753 B 1 HETATM 7 O O4B NAP . . . H 4 94.872 31.698 275.527 1 89.86 ? O4B NAP 753 B 1 HETATM 8 C C3B NAP . . . H 4 96.601 32.777 276.64 1 90.45 ? C3B NAP 753 B 1 HETATM 9 O O3B NAP . . . H 4 96.469 32.467 278.032 1 90.26 ? O3B NAP 753 B 1 HETATM 10 C C2B NAP . . . H 4 97.101 31.671 275.733 1 91.15 ? C2B NAP 753 B 1 HETATM 11 O O2B NAP . . . H 4 98.309 30.988 276.199 1 92.17 ? O2B NAP 753 B 1 HETATM 12 C C1B NAP . . . H 4 95.96 30.792 275.7 1 90.56 ? C1B NAP 753 B 1 HETATM 13 N N9A NAP . . . H 4 95.951 29.756 274.616 1 90.19 ? N9A NAP 753 B 1 HETATM 14 C C8A NAP . . . H 4 96.812 29.455 273.611 1 89.86 ? C8A NAP 753 B 1 HETATM 15 N N7A NAP . . . H 4 96.372 28.403 272.89 1 89.71 ? N7A NAP 753 B 1 HETATM 16 C C5A NAP . . . H 4 95.233 28.07 273.475 1 89.19 ? C5A NAP 753 B 1 HETATM 17 C C6A NAP . . . H 4 94.361 27.026 273.132 1 88.72 ? C6A NAP 753 B 1 HETATM 18 N N6A NAP . . . H 4 94.581 26.198 272.128 1 88.45 ? N6A NAP 753 B 1 HETATM 19 N N1A NAP . . . H 4 93.224 26.869 273.894 1 88.1 ? N1A NAP 753 B 1 HETATM 20 C C2A NAP . . . H 4 92.94 27.69 274.945 1 88.09 ? C2A NAP 753 B 1 HETATM 21 N N3A NAP . . . H 4 93.764 28.693 275.292 1 88.35 ? N3A NAP 753 B 1 HETATM 22 C C4A NAP . . . H 4 94.934 28.9 274.556 1 89.37 ? C4A NAP 753 B 1 HETATM 23 O O3 NAP . . . H 4 95.748 35.288 272.151 1 99.07 ? O3 NAP 753 B 1 HETATM 24 P PN NAP . . . H 4 94.362 36.023 272.108 1 101.77 ? PN NAP 753 B 1 HETATM 25 O O1N NAP . . . H 4 94.48 37.143 273.068 1 100.8 ? O1N NAP 753 B 1 HETATM 26 O O2N NAP . . . H 4 93.306 34.963 272.358 1 100.87 ? O2N NAP 753 B 1 HETATM 27 O O5D NAP . . . H 4 94.519 36.437 270.562 1 104.82 ? O5D NAP 753 B 1 HETATM 28 C C5D NAP . . . H 4 95.786 36.97 269.964 1 107.9 ? C5D NAP 753 B 1 HETATM 29 C C4D NAP . . . H 4 95.744 37.273 268.482 1 109.94 ? C4D NAP 753 B 1 HETATM 30 O O4D NAP . . . H 4 95.642 36.063 267.735 1 111.72 ? O4D NAP 753 B 1 HETATM 31 C C3D NAP . . . H 4 94.597 38.208 267.964 1 111.08 ? C3D NAP 753 B 1 HETATM 32 O O3D NAP . . . H 4 95.144 39.439 267.493 1 110.35 ? O3D NAP 753 B 1 HETATM 33 C C2D NAP . . . H 4 93.852 37.443 266.885 1 112.25 ? C2D NAP 753 B 1 HETATM 34 O O2D NAP . . . H 4 93.774 38.142 265.641 1 111.99 ? O2D NAP 753 B 1 HETATM 35 C C1D NAP . . . H 4 94.552 36.118 266.77 1 112.54 ? C1D NAP 753 B 1 HETATM 36 N N1N NAP . . . H 4 93.779 34.87 267.094 1 112.78 ? N1N NAP 753 B 1 HETATM 37 P P2B NAP . . . H 4 99.782 31.142 275.66 1 93.11 ? P2B NAP 753 B 1 HETATM 38 O O1X NAP . . . H 4 99.692 32.157 274.574 1 92.73 ? O1X NAP 753 B 1 HETATM 39 O O2X NAP . . . H 4 100.17 29.782 275.213 1 91.27 ? O2X NAP 753 B 1 HETATM 40 O O3X NAP . . . H 4 100.423 31.671 276.873 1 93.96 ? O3X NAP 753 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #