data_2BNP
#
_model_server_result.job_id            gI60t7AGfjVgzuHvmXq_ZA 
_model_server_result.datetime_utc      '2025-04-23 15:41:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bnp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1285}' 
#
_entry.id    2BNP 
#
_exptl.entry_id    2BNP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.356 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BNP 
_cell.length_a            100.142 
_cell.length_b            100.142 
_cell.length_c            238.002 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BNP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 153 A HIS 153 1_555 E MG BCL . A BCL 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? 
metalc ? metalc2 A NE2 HIS 173 A HIS 173 1_555 D MG BCL . A BCL 1282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc3 A NE2 HIS 190 A HIS 190 1_555 K FE FE2 . B FE2 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc4 A NE2 HIS 230 A HIS 230 1_555 K FE FE2 . B FE2 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc5 B NE2 HIS 182 B HIS 182 1_555 H MG BCL . B BCL 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc6 B NE2 HIS 202 B HIS 202 1_555 I MG BCL . B BCL 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc7 B NE2 HIS 219 B HIS 219 1_555 K FE FE2 . B FE2 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc8 B OE2 GLU 234 B GLU 234 1_555 K FE FE2 . B FE2 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc9 B OE1 GLU 234 B GLU 234 1_555 K FE FE2 . B FE2 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc10 B NE2 HIS 266 B HIS 266 1_555 K FE FE2 . B FE2 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
#
_chem_comp.formula           'C10 H19 N5 S' 
_chem_comp.formula_weight    241.356 
_chem_comp.id                MST 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-T-BUTYLAMINO-4-ETHYLAMINO-6-METHYLTHIO-S-TRIAZINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MST doub 531 n y 
N1 C6 MST sing 532 n y 
C2 S7 MST sing 533 n n 
C2 N3 MST sing 534 n y 
S7 C8 MST sing 535 n n 
C8 H83 MST sing 536 n n 
C8 H82 MST sing 537 n n 
C8 H81 MST sing 538 n n 
N3 C4 MST doub 539 n y 
C4 N9 MST sing 540 n n 
C4 N5 MST sing 541 n y 
N9 C10 MST sing 542 n n 
N9 H9 MST sing 543 n n 
C10 C11 MST sing 544 n n 
C10 C12 MST sing 545 n n 
C10 C13 MST sing 546 n n 
C11 H113 MST sing 547 n n 
C11 H112 MST sing 548 n n 
C11 H111 MST sing 549 n n 
C12 H123 MST sing 550 n n 
C12 H122 MST sing 551 n n 
C12 H121 MST sing 552 n n 
C13 H133 MST sing 553 n n 
C13 H132 MST sing 554 n n 
C13 H131 MST sing 555 n n 
N5 C6 MST doub 556 n y 
C6 N14 MST sing 557 n n 
N14 C15 MST sing 558 n n 
N14 H14 MST sing 559 n n 
C15 C16 MST sing 560 n n 
C15 H152 MST sing 561 n n 
C15 H151 MST sing 562 n n 
C16 H163 MST sing 563 n n 
C16 H162 MST sing 564 n n 
C16 H161 MST sing 565 n n 
#
_atom_sites.entry_id                     2BNP 
_atom_sites.fract_transf_matrix[1][1]    0.009986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009986 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004202 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BCL A 1 1282 1282 BCL BCL . 
E 4 BCL A 1 1283 1283 BCL BCL . 
F 5 BPH A 1 1284 1284 BPH BPH . 
G 6 MST A 1 1285 1285 MST MST . 
H 4 BCL B 1 1302 1302 BCL BCL . 
I 4 BCL B 1 1303 1303 BCL BCL . 
J 5 BPH B 1 1304 1304 BPH BPH . 
K 7 FE2 B 1 1305 1305 FE2 FE2 . 
L 8 U10 B 1 1306 1306 U10 U10 . 
M 9 CL B 1 1307 1307 CL CL . 
N 10 PO4 B 1 1308 1308 PO4 PO4 . 
O 10 PO4 B 1 1309 1309 PO4 PO4 . 
P 11 HOH A 1 2001 2001 HOH HOH . 
P 11 HOH A 2 2002 2002 HOH HOH . 
P 11 HOH A 3 2003 2003 HOH HOH . 
P 11 HOH A 4 2004 2004 HOH HOH . 
P 11 HOH A 5 2005 2005 HOH HOH . 
P 11 HOH A 6 2006 2006 HOH HOH . 
P 11 HOH A 7 2007 2007 HOH HOH . 
P 11 HOH A 8 2008 2008 HOH HOH . 
P 11 HOH A 9 2009 2009 HOH HOH . 
P 11 HOH A 10 2010 2010 HOH HOH . 
P 11 HOH A 11 2011 2011 HOH HOH . 
P 11 HOH A 12 2012 2012 HOH HOH . 
P 11 HOH A 13 2013 2013 HOH HOH . 
P 11 HOH A 14 2014 2014 HOH HOH . 
P 11 HOH A 15 2015 2015 HOH HOH . 
P 11 HOH A 16 2016 2016 HOH HOH . 
P 11 HOH A 17 2017 2017 HOH HOH . 
P 11 HOH A 18 2018 2018 HOH HOH . 
P 11 HOH A 19 2019 2019 HOH HOH . 
P 11 HOH A 20 2020 2020 HOH HOH . 
P 11 HOH A 21 2021 2021 HOH HOH . 
P 11 HOH A 22 2022 2022 HOH HOH . 
Q 11 HOH B 1 2001 2001 HOH HOH . 
Q 11 HOH B 2 2002 2002 HOH HOH . 
Q 11 HOH B 3 2003 2003 HOH HOH . 
Q 11 HOH B 4 2004 2004 HOH HOH . 
Q 11 HOH B 5 2005 2005 HOH HOH . 
Q 11 HOH B 6 2006 2006 HOH HOH . 
Q 11 HOH B 7 2007 2007 HOH HOH . 
Q 11 HOH B 8 2008 2008 HOH HOH . 
Q 11 HOH B 9 2009 2009 HOH HOH . 
Q 11 HOH B 10 2010 2010 HOH HOH . 
Q 11 HOH B 11 2011 2011 HOH HOH . 
Q 11 HOH B 12 2012 2012 HOH HOH . 
Q 11 HOH B 13 2013 2013 HOH HOH . 
Q 11 HOH B 14 2014 2014 HOH HOH . 
Q 11 HOH B 15 2015 2015 HOH HOH . 
Q 11 HOH B 16 2016 2016 HOH HOH . 
Q 11 HOH B 17 2017 2017 HOH HOH . 
Q 11 HOH B 18 2018 2018 HOH HOH . 
Q 11 HOH B 19 2019 2019 HOH HOH . 
Q 11 HOH B 20 2020 2020 HOH HOH . 
Q 11 HOH B 21 2021 2021 HOH HOH . 
Q 11 HOH B 22 2022 2022 HOH HOH . 
R 11 HOH C 1 2001 2001 HOH HOH . 
R 11 HOH C 2 2002 2002 HOH HOH . 
R 11 HOH C 3 2003 2003 HOH HOH . 
R 11 HOH C 4 2004 2004 HOH HOH . 
R 11 HOH C 5 2005 2005 HOH HOH . 
R 11 HOH C 6 2006 2006 HOH HOH . 
R 11 HOH C 7 2007 2007 HOH HOH . 
R 11 HOH C 8 2008 2008 HOH HOH . 
R 11 HOH C 9 2009 2009 HOH HOH . 
R 11 HOH C 10 2010 2010 HOH HOH . 
R 11 HOH C 11 2011 2011 HOH HOH . 
R 11 HOH C 12 2012 2012 HOH HOH . 
R 11 HOH C 13 2013 2013 HOH HOH . 
R 11 HOH C 14 2014 2014 HOH HOH . 
R 11 HOH C 15 2015 2015 HOH HOH . 
R 11 HOH C 16 2016 2016 HOH HOH . 
R 11 HOH C 17 2017 2017 HOH HOH . 
R 11 HOH C 18 2018 2018 HOH HOH . 
R 11 HOH C 19 2019 2019 HOH HOH . 
R 11 HOH C 20 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MST . . . G 6 98.08 28.56 77.909 1 55.26 ? N1 MST 1285 A 1 
HETATM 2 C C2 MST . . . G 6 98.209 28.326 79.236 1 58.15 ? C2 MST 1285 A 1 
HETATM 3 S S7 MST . . . G 6 97.327 29.09 80.415 1 60.21 ? S7 MST 1285 A 1 
HETATM 4 C C8 MST . . . G 6 97.614 27.995 81.824 1 56.77 ? C8 MST 1285 A 1 
HETATM 5 N N3 MST . . . G 6 99.059 27.432 79.799 1 58.97 ? N3 MST 1285 A 1 
HETATM 6 C C4 MST . . . G 6 99.891 26.679 79.051 1 58.7 ? C4 MST 1285 A 1 
HETATM 7 N N9 MST . . . G 6 100.727 25.776 79.69 1 57.69 ? N9 MST 1285 A 1 
HETATM 8 C C10 MST . . . G 6 100.608 25.235 81.138 1 56.54 ? C10 MST 1285 A 1 
HETATM 9 C C11 MST . . . G 6 101.051 23.746 81.162 1 55.82 ? C11 MST 1285 A 1 
HETATM 10 C C12 MST . . . G 6 99.178 25.367 81.708 1 54.93 ? C12 MST 1285 A 1 
HETATM 11 C C13 MST . . . G 6 101.569 26.038 82.029 1 56.31 ? C13 MST 1285 A 1 
HETATM 12 N N5 MST . . . G 6 99.811 26.903 77.683 1 58.34 ? N5 MST 1285 A 1 
HETATM 13 C C6 MST . . . G 6 98.917 27.819 77.129 1 56.99 ? C6 MST 1285 A 1 
HETATM 14 N N14 MST . . . G 6 98.872 27.994 75.805 1 54.77 ? N14 MST 1285 A 1 
HETATM 15 C C15 MST . . . G 6 97.599 28.037 75.107 1 52.98 ? C15 MST 1285 A 1 
HETATM 16 C C16 MST . . . G 6 97.769 28.838 73.831 1 53.21 ? C16 MST 1285 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    180 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          59 
_model_server_stats.element_count           16 
#