data_2BOS # _model_server_result.job_id CMGvg3rMDKHEuSRrovRYmQ _model_server_result.datetime_utc '2024-11-07 04:45:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":193}' # _entry.id 2BOS # _exptl.entry_id 2BOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.122 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-BUTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BOS _cell.length_a 62.077 _cell.length_b 78.618 _cell.length_c 78.468 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLA GAL C1 O1 . O4 HO4 . sing 3 ? 3 2 1 GLA GAL C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F GLC 1 F 1 GLC F 192 GLC 2 n F GAL 2 F 2 GAL F 191 GAL 2 n F GLA 3 F 3 GLA F 190 GAL 2 n G GLC 1 G 1 GLC F 172 GLC 2 n G GAL 2 G 2 GAL F 171 GAL 2 n G GLA 3 G 3 GLA F 170 GAL 2 n H GLC 1 H 1 GLC F 292 GLC 2 n H GAL 2 H 2 GAL F 291 GAL 2 n H GLA 3 H 3 GLA F 290 GAL 3 n I GAL 1 I 1 GAL F 271 GAL 3 n I GLA 2 I 2 GLA F 270 GAL 2 n J GLC 1 J 1 GLC F 392 GLC 2 n J GAL 2 J 2 GAL F 391 GAL 2 n J GLA 3 J 3 GLA F 390 GAL 2 n K GLC 1 K 1 GLC F 592 GLC 2 n K GAL 2 K 2 GAL F 591 GAL 2 n K GLA 3 K 3 GLA F 590 GAL 3 n L GAL 1 L 1 GAL F 571 GAL 3 n L GLA 2 L 2 GLA F 570 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 104 1_555 A SG CYS 56 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf2 B SG CYS 3 B CYS 204 1_555 B SG CYS 56 B CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 C SG CYS 3 C CYS 304 1_555 C SG CYS 56 C CYS 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 D SG CYS 3 D CYS 404 1_555 D SG CYS 56 D CYS 457 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 E SG CYS 3 E CYS 504 1_555 E SG CYS 56 E CYS 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 M C1 NBU . A NBU 193 1_555 F O1 GLC . F GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale2 N C1 NBU . C NBU 393 1_555 J O1 GLC . J GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 O C1 NBU . E NBU 593 1_555 K O1 GLC . K GLC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 F O4 GLC . F GLC 1 1_555 F C1 GAL . F GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale5 F O4 GAL . F GAL 2 1_555 F C1 GLA . F GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale6 G O4 GLC . G GLC 1 1_555 G C1 GAL . G GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? covale ? covale7 G O4 GAL . G GAL 2 1_555 G C1 GLA . G GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale8 H O4 GLC . H GLC 1 1_555 H C1 GAL . H GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale9 H O4 GAL . H GAL 2 1_555 H C1 GLA . H GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale10 I O4 GAL . I GAL 1 1_555 I C1 GLA . I GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale11 J O4 GLC . J GLC 1 1_555 J C1 GAL . J GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale12 J O4 GAL . J GAL 2 1_555 J C1 GLA . J GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale13 K O4 GLC . K GLC 1 1_555 K C1 GAL . K GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale14 K O4 GAL . K GAL 2 1_555 K C1 GLA . K GLA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.394 ? covale ? covale15 L O4 GAL . L GAL 1 1_555 L C1 GLA . L GLA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 ? # _chem_comp.formula 'C4 H10' _chem_comp.formula_weight 58.122 _chem_comp.id NBU _chem_comp.mon_nstd_flag . _chem_comp.name N-BUTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NBU sing 288 n n C1 H11 NBU sing 289 n n C1 H12 NBU sing 290 n n C1 H13 NBU sing 291 n n C2 C3 NBU sing 292 n n C2 H21 NBU sing 293 n n C2 H22 NBU sing 294 n n C3 C4 NBU sing 295 n n C3 H31 NBU sing 296 n n C3 H32 NBU sing 297 n n C4 H41 NBU sing 298 n n C4 H42 NBU sing 299 n n C4 H43 NBU sing 300 n n # _atom_sites.entry_id 2BOS _atom_sites.fract_transf_matrix[1][1] 0.016109 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01272 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012744 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 NBU A 1 193 193 NBU BUT . N 4 NBU C 1 393 393 NBU BUT . O 4 NBU E 1 593 593 NBU BUT . P 5 HOH A 1 194 1 HOH HOH . P 5 HOH A 2 195 2 HOH HOH . P 5 HOH A 3 196 3 HOH HOH . P 5 HOH A 4 197 4 HOH HOH . P 5 HOH A 5 198 5 HOH HOH . P 5 HOH A 6 199 6 HOH HOH . P 5 HOH A 7 200 9 HOH HOH . P 5 HOH A 8 201 10 HOH HOH . P 5 HOH A 9 202 11 HOH HOH . P 5 HOH A 10 203 12 HOH HOH . P 5 HOH A 11 204 18 HOH HOH . P 5 HOH A 12 205 30 HOH HOH . P 5 HOH A 13 206 31 HOH HOH . P 5 HOH A 14 207 32 HOH HOH . P 5 HOH A 15 208 59 HOH HOH . P 5 HOH A 16 209 60 HOH HOH . P 5 HOH A 17 210 61 HOH HOH . P 5 HOH A 18 211 62 HOH HOH . P 5 HOH A 19 212 63 HOH HOH . P 5 HOH A 20 213 69 HOH HOH . P 5 HOH A 21 214 70 HOH HOH . P 5 HOH A 22 215 90 HOH HOH . P 5 HOH A 23 216 91 HOH HOH . P 5 HOH A 24 217 92 HOH HOH . P 5 HOH A 25 218 93 HOH HOH . P 5 HOH A 26 219 102 HOH HOH . P 5 HOH A 27 220 110 HOH HOH . P 5 HOH A 28 221 127 HOH HOH . P 5 HOH A 29 222 130 HOH HOH . P 5 HOH A 30 223 140 HOH HOH . P 5 HOH A 31 224 141 HOH HOH . Q 5 HOH B 1 13 13 HOH HOH . Q 5 HOH B 2 14 14 HOH HOH . Q 5 HOH B 3 17 17 HOH HOH . Q 5 HOH B 4 24 24 HOH HOH . Q 5 HOH B 5 25 25 HOH HOH . Q 5 HOH B 6 26 26 HOH HOH . Q 5 HOH B 7 27 27 HOH HOH . Q 5 HOH B 8 48 48 HOH HOH . Q 5 HOH B 9 49 49 HOH HOH . Q 5 HOH B 10 51 51 HOH HOH . Q 5 HOH B 11 54 54 HOH HOH . Q 5 HOH B 12 55 55 HOH HOH . Q 5 HOH B 13 56 56 HOH HOH . Q 5 HOH B 14 57 57 HOH HOH . Q 5 HOH B 15 58 58 HOH HOH . Q 5 HOH B 16 64 64 HOH HOH . Q 5 HOH B 17 88 88 HOH HOH . Q 5 HOH B 18 97 97 HOH HOH . Q 5 HOH B 19 101 101 HOH HOH . Q 5 HOH B 20 114 114 HOH HOH . Q 5 HOH B 21 115 115 HOH HOH . Q 5 HOH B 22 116 116 HOH HOH . Q 5 HOH B 23 122 122 HOH HOH . Q 5 HOH B 24 123 123 HOH HOH . Q 5 HOH B 25 126 126 HOH HOH . Q 5 HOH B 26 128 128 HOH HOH . Q 5 HOH B 27 129 129 HOH HOH . Q 5 HOH B 28 149 149 HOH HOH . Q 5 HOH B 29 151 151 HOH HOH . Q 5 HOH B 30 156 156 HOH HOH . Q 5 HOH B 31 157 157 HOH HOH . R 5 HOH C 1 19 19 HOH HOH . R 5 HOH C 2 21 21 HOH HOH . R 5 HOH C 3 22 22 HOH HOH . R 5 HOH C 4 23 23 HOH HOH . R 5 HOH C 5 33 33 HOH HOH . R 5 HOH C 6 38 38 HOH HOH . R 5 HOH C 7 40 40 HOH HOH . R 5 HOH C 8 44 44 HOH HOH . R 5 HOH C 9 45 45 HOH HOH . R 5 HOH C 10 65 65 HOH HOH . R 5 HOH C 11 66 66 HOH HOH . R 5 HOH C 12 67 67 HOH HOH . R 5 HOH C 13 68 68 HOH HOH . R 5 HOH C 14 72 72 HOH HOH . R 5 HOH C 15 73 73 HOH HOH . R 5 HOH C 16 74 74 HOH HOH . R 5 HOH C 17 75 75 HOH HOH . R 5 HOH C 18 76 76 HOH HOH . R 5 HOH C 19 77 77 HOH HOH . R 5 HOH C 20 78 78 HOH HOH . R 5 HOH C 21 79 79 HOH HOH . R 5 HOH C 22 94 94 HOH HOH . R 5 HOH C 23 95 95 HOH HOH . R 5 HOH C 24 96 96 HOH HOH . R 5 HOH C 25 107 107 HOH HOH . R 5 HOH C 26 111 111 HOH HOH . R 5 HOH C 27 120 120 HOH HOH . R 5 HOH C 28 121 121 HOH HOH . R 5 HOH C 29 133 133 HOH HOH . R 5 HOH C 30 138 138 HOH HOH . R 5 HOH C 31 142 142 HOH HOH . R 5 HOH C 32 143 143 HOH HOH . R 5 HOH C 33 144 144 HOH HOH . R 5 HOH C 34 154 154 HOH HOH . R 5 HOH C 35 158 158 HOH HOH . S 5 HOH D 1 8 8 HOH HOH . S 5 HOH D 2 15 15 HOH HOH . S 5 HOH D 3 16 16 HOH HOH . S 5 HOH D 4 36 36 HOH HOH . S 5 HOH D 5 43 43 HOH HOH . S 5 HOH D 6 50 50 HOH HOH . S 5 HOH D 7 83 83 HOH HOH . S 5 HOH D 8 84 84 HOH HOH . S 5 HOH D 9 85 85 HOH HOH . S 5 HOH D 10 87 87 HOH HOH . S 5 HOH D 11 100 100 HOH HOH . S 5 HOH D 12 103 103 HOH HOH . S 5 HOH D 13 104 104 HOH HOH . S 5 HOH D 14 105 105 HOH HOH . S 5 HOH D 15 106 106 HOH HOH . S 5 HOH D 16 113 113 HOH HOH . S 5 HOH D 17 119 119 HOH HOH . S 5 HOH D 18 132 132 HOH HOH . S 5 HOH D 19 134 134 HOH HOH . S 5 HOH D 20 136 136 HOH HOH . S 5 HOH D 21 137 137 HOH HOH . S 5 HOH D 22 139 139 HOH HOH . S 5 HOH D 23 147 147 HOH HOH . S 5 HOH D 24 148 148 HOH HOH . S 5 HOH D 25 152 152 HOH HOH . S 5 HOH D 26 153 153 HOH HOH . S 5 HOH D 27 159 159 HOH HOH . S 5 HOH D 28 160 160 HOH HOH . T 5 HOH E 1 7 7 HOH HOH . T 5 HOH E 2 20 20 HOH HOH . T 5 HOH E 3 28 28 HOH HOH . T 5 HOH E 4 29 29 HOH HOH . T 5 HOH E 5 34 34 HOH HOH . T 5 HOH E 6 35 35 HOH HOH . T 5 HOH E 7 37 37 HOH HOH . T 5 HOH E 8 39 39 HOH HOH . T 5 HOH E 9 41 41 HOH HOH . T 5 HOH E 10 42 42 HOH HOH . T 5 HOH E 11 46 46 HOH HOH . T 5 HOH E 12 47 47 HOH HOH . T 5 HOH E 13 52 52 HOH HOH . T 5 HOH E 14 53 53 HOH HOH . T 5 HOH E 15 71 71 HOH HOH . T 5 HOH E 16 80 80 HOH HOH . T 5 HOH E 17 81 81 HOH HOH . T 5 HOH E 18 82 82 HOH HOH . T 5 HOH E 19 86 86 HOH HOH . T 5 HOH E 20 89 89 HOH HOH . T 5 HOH E 21 98 98 HOH HOH . T 5 HOH E 22 99 99 HOH HOH . T 5 HOH E 23 108 108 HOH HOH . T 5 HOH E 24 109 109 HOH HOH . T 5 HOH E 25 112 112 HOH HOH . T 5 HOH E 26 117 117 HOH HOH . T 5 HOH E 27 118 118 HOH HOH . T 5 HOH E 28 124 124 HOH HOH . T 5 HOH E 29 125 125 HOH HOH . T 5 HOH E 30 131 131 HOH HOH . T 5 HOH E 31 135 135 HOH HOH . T 5 HOH E 32 145 145 HOH HOH . T 5 HOH E 33 146 146 HOH HOH . T 5 HOH E 34 150 150 HOH HOH . T 5 HOH E 35 155 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NBU . . . M 4 35.097 36.932 18.063 1 42.52 ? C1 NBU 193 A 1 HETATM 2 C C2 NBU . . . M 4 35.224 38.191 18.823 1 48.46 ? C2 NBU 193 A 1 HETATM 3 C C3 NBU . . . M 4 34.791 37.979 20.289 1 53.49 ? C3 NBU 193 A 1 HETATM 4 C C4 NBU . . . M 4 33.264 37.773 20.485 1 56.9 ? C4 NBU 193 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #