data_2BPF # _model_server_result.job_id SAHNrQTjorvx2itppgrHMQ _model_server_result.datetime_utc '2024-10-26 20:29:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":340}' # _entry.id 2BPF # _exptl.entry_id 2BPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BPF _cell.length_a 94.9 _cell.length_b 94.9 _cell.length_c 117.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O ASP 190 A ASP 190 1_555 D MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.085 ? metalc ? metalc2 C OD1 ASP 190 A ASP 190 1_555 D MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc3 C OD2 ASP 190 A ASP 190 1_555 E MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 C OD2 ASP 192 A ASP 192 1_555 D MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc5 C OD1 ASP 192 A ASP 192 1_555 E MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 F O2B DCT . A DCT 338 1_555 D MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.715 ? metalc ? metalc7 F O1A DCT . A DCT 338 1_555 D MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.95 ? metalc ? metalc8 F O1G DCT . A DCT 338 1_555 D MG MG . A MG 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc9 F O1A DCT . A DCT 338 1_555 E MG MG . A MG 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc10 D MG MG . A MG 339 1_555 I O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 T DG 5 1_555 B N3 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 T DG 5 1_555 B O2 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 T DG 5 1_555 B N4 DC 7 P DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 3 T DG 6 1_555 B N3 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 3 T DG 6 1_555 B O2 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 3 T DG 6 1_555 B N4 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 4 T DC 7 1_555 B N1 DG 5 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 4 T DC 7 1_555 B O6 DG 5 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 4 T DC 7 1_555 B N2 DG 5 P DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 5 T DG 8 1_555 B N3 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 5 T DG 8 1_555 B O2 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 5 T DG 8 1_555 B N4 DC 4 P DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 6 T DC 9 1_555 B N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 6 T DC 9 1_555 B O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 6 T DC 9 1_555 B N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 7 T DC 10 1_555 B N1 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 7 T DC 10 1_555 B O6 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 7 T DC 10 1_555 B N2 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 8 T DG 11 1_555 B N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 8 T DG 11 1_555 B O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 8 T DG 11 1_555 B N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BPF _atom_sites.fract_transf_matrix[1][1] 0.010537 _atom_sites.fract_transf_matrix[1][2] 0.006084 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 339 339 MG MG . E 4 MG A 1 340 340 MG MG . F 5 DCT A 1 338 338 DCT DCT . G 6 HOH T 1 410 410 HOH HOH . G 6 HOH T 2 417 417 HOH HOH . H 6 HOH P 1 401 401 HOH HOH . H 6 HOH P 2 411 411 HOH HOH . I 6 HOH A 1 400 400 HOH HOH . I 6 HOH A 2 402 402 HOH HOH . I 6 HOH A 3 403 403 HOH HOH . I 6 HOH A 4 404 404 HOH HOH . I 6 HOH A 5 405 405 HOH HOH . I 6 HOH A 6 406 406 HOH HOH . I 6 HOH A 7 407 407 HOH HOH . I 6 HOH A 8 408 408 HOH HOH . I 6 HOH A 9 409 409 HOH HOH . I 6 HOH A 10 412 412 HOH HOH . I 6 HOH A 11 413 413 HOH HOH . I 6 HOH A 12 414 414 HOH HOH . I 6 HOH A 13 415 415 HOH HOH . I 6 HOH A 14 416 416 HOH HOH . I 6 HOH A 15 418 418 HOH HOH . I 6 HOH A 16 419 419 HOH HOH . I 6 HOH A 17 420 420 HOH HOH . I 6 HOH A 18 421 421 HOH HOH . I 6 HOH A 19 422 422 HOH HOH . I 6 HOH A 20 423 423 HOH HOH . I 6 HOH A 21 424 424 HOH HOH . I 6 HOH A 22 425 425 HOH HOH . I 6 HOH A 23 426 426 HOH HOH . I 6 HOH A 24 427 427 HOH HOH . I 6 HOH A 25 428 428 HOH HOH . I 6 HOH A 26 429 429 HOH HOH . I 6 HOH A 27 430 430 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 13.937 _atom_site.Cartn_y 63.578 _atom_site.Cartn_z 14.776 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 79.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 340 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #