data_2BPV
#
_model_server_result.job_id            6e0Xe2Iih6JcUvpkEQMt1Q 
_model_server_result.datetime_utc      '2025-04-16 21:49:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bpv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    2BPV 
#
_exptl.entry_id    2BPV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              621.81 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1-[2-HYDROXY-4-(2-HYDROXY-5-METHYL-CYCLOPENTYLCARBAMOYL)5-PHENYL-PENTYL]-4-(3-PYRIDIN-3-YL-PROPIONYL)-PIPERAZINE-2-CARB OXYLIC ACID TERT-BUTYLAMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BPV 
_cell.length_a            58.8 
_cell.length_b            87.38 
_cell.length_c            46.79 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BPV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C35 H51 N5 O5' 
_chem_comp.formula_weight    621.81 
_chem_comp.id                1IN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1-[2-HYDROXY-4-(2-HYDROXY-5-METHYL-CYCLOPENTYLCARBAMOYL)5-PHENYL-PENTYL]-4-(3-PYRIDIN-3-YL-PROPIONYL)-PIPERAZINE-2-CARB OXYLIC ACID TERT-BUTYLAMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     L-738,317 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 1IN sing 1 n n 
C1 N1 1IN sing 2 n n 
C1 H11A 1IN sing 3 n n 
C1 H12 1IN sing 4 n n 
C2 C3 1IN sing 5 n n 
C2 N3 1IN sing 6 n n 
C2 H2 1IN sing 7 n n 
C3 O1 1IN doub 8 n n 
C3 N2 1IN sing 9 n n 
O4 C23 1IN sing 10 n n 
O4 HO4 1IN sing 11 n n 
O5 C31 1IN doub 12 n n 
C7 C4 1IN sing 13 n n 
C7 H71 1IN sing 14 n n 
C7 H72 1IN sing 15 n n 
C7 H73 1IN sing 16 n n 
C8 C9 1IN sing 17 n n 
C8 N3 1IN sing 18 n n 
C8 H81 1IN sing 19 n n 
C8 H82 1IN sing 20 n n 
C9 N1 1IN sing 21 n n 
C9 H91 1IN sing 22 n n 
C9 H92 1IN sing 23 n n 
C10 C11 1IN sing 24 n n 
C10 N3 1IN sing 25 n n 
C10 H101 1IN sing 26 n n 
C10 H102 1IN sing 27 n n 
C11 C12 1IN sing 28 n n 
C11 O2 1IN sing 29 n n 
C11 H11 1IN sing 30 n n 
C12 C13 1IN sing 31 n n 
C12 H121 1IN sing 32 n n 
C12 H122 1IN sing 33 n n 
C13 C14 1IN sing 34 n n 
C13 C21 1IN sing 35 n n 
C13 H13 1IN sing 36 n n 
C14 C15 1IN sing 37 n n 
C14 H141 1IN sing 38 n n 
C14 H142 1IN sing 39 n n 
C15 C16 1IN doub 40 n y 
C15 C20 1IN sing 41 n y 
C16 C17 1IN sing 42 n y 
C16 H16 1IN sing 43 n n 
C19 C20 1IN doub 44 n y 
C19 C18 1IN sing 45 n y 
C19 H19 1IN sing 46 n n 
C20 H20 1IN sing 47 n n 
C21 O3 1IN doub 48 n n 
C21 N4 1IN sing 49 n n 
C22 C30 1IN sing 50 n n 
C22 N4 1IN sing 51 n n 
C22 C23 1IN sing 52 n n 
C22 H22 1IN sing 53 n n 
C24 C23 1IN sing 54 n n 
C24 C25 1IN sing 55 n n 
C24 H241 1IN sing 56 n n 
C24 H242 1IN sing 57 n n 
C27 C26 1IN sing 58 n n 
C27 C28 1IN sing 59 n n 
C27 H271 1IN sing 60 n n 
C27 H272 1IN sing 61 n n 
C30 C25 1IN sing 62 n n 
C30 C29 1IN sing 63 n n 
C30 H30 1IN sing 64 n n 
C31 N1 1IN sing 65 n n 
C31 C26 1IN sing 66 n n 
C32 C33 1IN doub 67 n y 
C32 C28 1IN sing 68 n y 
C32 H32 1IN sing 69 n n 
C33 C34 1IN sing 70 n y 
C33 H33 1IN sing 71 n n 
C34 N5 1IN doub 72 n y 
C34 H34 1IN sing 73 n n 
C35 C28 1IN doub 74 n y 
C35 N5 1IN sing 75 n y 
C35 H35 1IN sing 76 n n 
N2 C4 1IN sing 77 n n 
N2 HN2 1IN sing 78 n n 
C4 C5 1IN sing 79 n n 
C4 C6 1IN sing 80 n n 
C5 H51 1IN sing 81 n n 
C5 H52 1IN sing 82 n n 
C5 H53 1IN sing 83 n n 
C6 H61 1IN sing 84 n n 
C6 H62 1IN sing 85 n n 
C6 H63 1IN sing 86 n n 
O2 HO2 1IN sing 87 n n 
C17 C18 1IN doub 88 n y 
C17 H17 1IN sing 89 n n 
C18 H18 1IN sing 90 n n 
N4 HN4 1IN sing 91 n n 
C23 H23 1IN sing 92 n n 
C25 H251 1IN sing 93 n n 
C25 H252 1IN sing 94 n n 
C29 H291 1IN sing 95 n n 
C29 H292 1IN sing 96 n n 
C29 H293 1IN sing 97 n n 
C26 H261 1IN sing 98 n n 
C26 H262 1IN sing 99 n n 
#
_atom_sites.entry_id                     2BPV 
_atom_sites.fract_transf_matrix[1][1]    0.017007 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011444 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021372 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1IN B 1 902 902 1IN 1IN . 
D 3 HOH A 1 305 305 HOH HOH . 
D 3 HOH A 2 307 307 HOH HOH . 
D 3 HOH A 3 309 309 HOH HOH . 
D 3 HOH A 4 314 314 HOH HOH . 
D 3 HOH A 5 315 315 HOH HOH . 
D 3 HOH A 6 324 324 HOH HOH . 
D 3 HOH A 7 325 325 HOH HOH . 
D 3 HOH A 8 327 327 HOH HOH . 
D 3 HOH A 9 328 328 HOH HOH . 
D 3 HOH A 10 329 329 HOH HOH . 
D 3 HOH A 11 331 331 HOH HOH . 
D 3 HOH A 12 332 332 HOH HOH . 
D 3 HOH A 13 344 344 HOH HOH . 
D 3 HOH A 14 345 345 HOH HOH . 
D 3 HOH A 15 357 357 HOH HOH . 
D 3 HOH A 16 384 384 HOH HOH . 
D 3 HOH A 17 386 386 HOH HOH . 
D 3 HOH A 18 389 389 HOH HOH . 
D 3 HOH A 19 394 394 HOH HOH . 
D 3 HOH A 20 406 406 HOH HOH . 
D 3 HOH A 21 408 408 HOH HOH . 
D 3 HOH A 22 416 416 HOH HOH . 
D 3 HOH A 23 422 422 HOH HOH . 
D 3 HOH A 24 439 439 HOH HOH . 
D 3 HOH A 25 457 457 HOH HOH . 
D 3 HOH A 26 501 501 HOH HOH . 
D 3 HOH A 27 503 503 HOH HOH . 
D 3 HOH A 28 510 510 HOH HOH . 
D 3 HOH A 29 524 524 HOH HOH . 
D 3 HOH A 30 529 529 HOH HOH . 
D 3 HOH A 31 532 532 HOH HOH . 
D 3 HOH A 32 553 553 HOH HOH . 
D 3 HOH A 33 561 561 HOH HOH . 
D 3 HOH A 34 567 567 HOH HOH . 
D 3 HOH A 35 572 572 HOH HOH . 
D 3 HOH A 36 575 575 HOH HOH . 
D 3 HOH A 37 618 618 HOH HOH . 
D 3 HOH A 38 619 619 HOH HOH . 
D 3 HOH A 39 620 620 HOH HOH . 
D 3 HOH A 40 621 621 HOH HOH . 
D 3 HOH A 41 623 623 HOH HOH . 
D 3 HOH A 42 625 625 HOH HOH . 
D 3 HOH A 43 628 628 HOH HOH . 
E 3 HOH B 1 301 301 HOH HOH . 
E 3 HOH B 2 304 304 HOH HOH . 
E 3 HOH B 3 306 306 HOH HOH . 
E 3 HOH B 4 308 308 HOH HOH . 
E 3 HOH B 5 312 312 HOH HOH . 
E 3 HOH B 6 313 313 HOH HOH . 
E 3 HOH B 7 316 316 HOH HOH . 
E 3 HOH B 8 317 317 HOH HOH . 
E 3 HOH B 9 318 318 HOH HOH . 
E 3 HOH B 10 319 319 HOH HOH . 
E 3 HOH B 11 321 321 HOH HOH . 
E 3 HOH B 12 323 323 HOH HOH . 
E 3 HOH B 13 326 326 HOH HOH . 
E 3 HOH B 14 333 333 HOH HOH . 
E 3 HOH B 15 334 334 HOH HOH . 
E 3 HOH B 16 335 335 HOH HOH . 
E 3 HOH B 17 338 338 HOH HOH . 
E 3 HOH B 18 339 339 HOH HOH . 
E 3 HOH B 19 340 340 HOH HOH . 
E 3 HOH B 20 346 346 HOH HOH . 
E 3 HOH B 21 347 347 HOH HOH . 
E 3 HOH B 22 348 348 HOH HOH . 
E 3 HOH B 23 349 349 HOH HOH . 
E 3 HOH B 24 350 350 HOH HOH . 
E 3 HOH B 25 354 354 HOH HOH . 
E 3 HOH B 26 355 355 HOH HOH . 
E 3 HOH B 27 356 356 HOH HOH . 
E 3 HOH B 28 358 358 HOH HOH . 
E 3 HOH B 29 359 359 HOH HOH . 
E 3 HOH B 30 362 362 HOH HOH . 
E 3 HOH B 31 364 364 HOH HOH . 
E 3 HOH B 32 367 367 HOH HOH . 
E 3 HOH B 33 369 369 HOH HOH . 
E 3 HOH B 34 370 370 HOH HOH . 
E 3 HOH B 35 374 374 HOH HOH . 
E 3 HOH B 36 375 375 HOH HOH . 
E 3 HOH B 37 376 376 HOH HOH . 
E 3 HOH B 38 377 377 HOH HOH . 
E 3 HOH B 39 379 379 HOH HOH . 
E 3 HOH B 40 381 381 HOH HOH . 
E 3 HOH B 41 383 383 HOH HOH . 
E 3 HOH B 42 387 387 HOH HOH . 
E 3 HOH B 43 388 388 HOH HOH . 
E 3 HOH B 44 392 392 HOH HOH . 
E 3 HOH B 45 393 393 HOH HOH . 
E 3 HOH B 46 395 395 HOH HOH . 
E 3 HOH B 47 400 400 HOH HOH . 
E 3 HOH B 48 401 401 HOH HOH . 
E 3 HOH B 49 405 405 HOH HOH . 
E 3 HOH B 50 410 410 HOH HOH . 
E 3 HOH B 51 414 414 HOH HOH . 
E 3 HOH B 52 419 419 HOH HOH . 
E 3 HOH B 53 420 420 HOH HOH . 
E 3 HOH B 54 425 425 HOH HOH . 
E 3 HOH B 55 436 436 HOH HOH . 
E 3 HOH B 56 443 443 HOH HOH . 
E 3 HOH B 57 461 461 HOH HOH . 
E 3 HOH B 58 468 468 HOH HOH . 
E 3 HOH B 59 471 471 HOH HOH . 
E 3 HOH B 60 500 500 HOH HOH . 
E 3 HOH B 61 505 505 HOH HOH . 
E 3 HOH B 62 506 506 HOH HOH . 
E 3 HOH B 63 509 509 HOH HOH . 
E 3 HOH B 64 514 514 HOH HOH . 
E 3 HOH B 65 515 515 HOH HOH . 
E 3 HOH B 66 517 517 HOH HOH . 
E 3 HOH B 67 525 525 HOH HOH . 
E 3 HOH B 68 526 526 HOH HOH . 
E 3 HOH B 69 531 531 HOH HOH . 
E 3 HOH B 70 549 549 HOH HOH . 
E 3 HOH B 71 564 564 HOH HOH . 
E 3 HOH B 72 568 568 HOH HOH . 
E 3 HOH B 73 591 591 HOH HOH . 
E 3 HOH B 74 595 595 HOH HOH . 
E 3 HOH B 75 613 613 HOH HOH . 
E 3 HOH B 76 617 617 HOH HOH . 
E 3 HOH B 77 622 622 HOH HOH . 
E 3 HOH B 78 624 624 HOH HOH . 
E 3 HOH B 79 626 626 HOH HOH . 
E 3 HOH B 80 627 627 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 1IN . . . C 2 9.179 24.072 4.194 1 14.13 ? C1 1IN 902 B 1 
HETATM 2 C C2 1IN . . . C 2 10.352 24.965 4.625 1 12.27 ? C2 1IN 902 B 1 
HETATM 3 C C3 1IN . . . C 2 10.403 24.98 6.145 1 16.14 ? C3 1IN 902 B 1 
HETATM 4 O O4 1IN . . . C 2 18.574 19.924 4.905 1 17.98 ? O4 1IN 902 B 1 
HETATM 5 O O5 1IN . . . C 2 7.994 24.619 0.836 1 21.46 ? O5 1IN 902 B 1 
HETATM 6 C C7 1IN . . . C 2 8.936 25.395 8.734 1 17.74 ? C7 1IN 902 B 1 
HETATM 7 C C8 1IN . . . C 2 11.513 24.411 2.552 1 14.19 ? C8 1IN 902 B 1 
HETATM 8 C C9 1IN . . . C 2 10.32 23.604 2.083 1 14.36 ? C9 1IN 902 B 1 
HETATM 9 C C10 1IN . . . C 2 12.782 25.303 4.456 1 12.62 ? C10 1IN 902 B 1 
HETATM 10 C C11 1IN . . . C 2 13.932 24.312 4.685 1 12.17 ? C11 1IN 902 B 1 
HETATM 11 C C12 1IN . . . C 2 14.016 23.831 6.135 1 9.98 ? C12 1IN 902 B 1 
HETATM 12 C C13 1IN . . . C 2 15.181 22.887 6.456 1 13.74 ? C13 1IN 902 B 1 
HETATM 13 C C14 1IN . . . C 2 15.265 22.756 7.978 1 15.21 ? C14 1IN 902 B 1 
HETATM 14 C C15 1IN . . . C 2 16.379 21.841 8.425 1 18.62 ? C15 1IN 902 B 1 
HETATM 15 C C16 1IN . . . C 2 17.713 22.145 8.152 1 18.74 ? C16 1IN 902 B 1 
HETATM 16 C C19 1IN . . . C 2 17.027 19.833 9.604 1 20.41 ? C19 1IN 902 B 1 
HETATM 17 C C20 1IN . . . C 2 16.03 20.685 9.132 1 22.67 ? C20 1IN 902 B 1 
HETATM 18 C C21 1IN . . . C 2 14.979 21.507 5.802 1 13.81 ? C21 1IN 902 B 1 
HETATM 19 C C22 1IN . . . C 2 16.191 19.527 5.022 1 15.84 ? C22 1IN 902 B 1 
HETATM 20 C C24 1IN . . . C 2 17.609 17.738 4.558 1 16.21 ? C24 1IN 902 B 1 
HETATM 21 C C27 1IN . . . C 2 5.554 25.172 2.149 1 27.27 ? C27 1IN 902 B 1 
HETATM 22 C C30 1IN . . . C 2 15.744 19.014 3.624 1 18.46 ? C30 1IN 902 B 1 
HETATM 23 C C31 1IN . . . C 2 8.032 24.546 2.064 1 16.5 ? C31 1IN 902 B 1 
HETATM 24 C C32 1IN . . . C 2 3.094 24.992 2.133 1 35.04 ? C32 1IN 902 B 1 
HETATM 25 C C33 1IN . . . C 2 1.872 24.944 2.811 1 36.19 ? C33 1IN 902 B 1 
HETATM 26 C C34 1IN . . . C 2 1.902 24.968 4.213 1 38.05 ? C34 1IN 902 B 1 
HETATM 27 C C35 1IN . . . C 2 4.232 25.069 4.247 1 34.07 ? C35 1IN 902 B 1 
HETATM 28 N N1 1IN . . . C 2 9.125 24.111 2.738 1 13.05 ? N1 1IN 902 B 1 
HETATM 29 O O1 1IN . . . C 2 10.729 23.96 6.759 1 13.75 ? O1 1IN 902 B 1 
HETATM 30 N N2 1IN . . . C 2 10.042 26.167 6.691 1 16.45 ? N2 1IN 902 B 1 
HETATM 31 C C4 1IN . . . C 2 9.959 26.375 8.129 1 14.17 ? C4 1IN 902 B 1 
HETATM 32 C C5 1IN . . . C 2 9.466 27.818 8.359 1 16.64 ? C5 1IN 902 B 1 
HETATM 33 C C6 1IN . . . C 2 11.34 26.205 8.779 1 15.53 ? C6 1IN 902 B 1 
HETATM 34 N N3 1IN . . . C 2 11.629 24.508 4.013 1 16.61 ? N3 1IN 902 B 1 
HETATM 35 O O2 1IN . . . C 2 15.143 24.989 4.371 1 11.33 ? O2 1IN 902 B 1 
HETATM 36 C C17 1IN . . . C 2 18.714 21.292 8.611 1 20.24 ? C17 1IN 902 B 1 
HETATM 37 C C18 1IN . . . C 2 18.371 20.137 9.337 1 20.57 ? C18 1IN 902 B 1 
HETATM 38 O O3 1IN . . . C 2 13.874 20.964 5.788 1 13.97 ? O3 1IN 902 B 1 
HETATM 39 N N4 1IN . . . C 2 16.082 20.973 5.25 1 13.61 ? N4 1IN 902 B 1 
HETATM 40 C C23 1IN . . . C 2 17.596 19.015 5.404 1 16.94 ? C23 1IN 902 B 1 
HETATM 41 C C25 1IN . . . C 2 16.853 18.006 3.302 1 15.18 ? C25 1IN 902 B 1 
HETATM 42 C C29 1IN . . . C 2 15.727 20.116 2.603 1 19.7 ? C29 1IN 902 B 1 
HETATM 43 C C26 1IN . . . C 2 6.83 24.945 2.833 1 21.18 ? C26 1IN 902 B 1 
HETATM 44 C C28 1IN . . . C 2 4.287 25.062 2.854 1 31.34 ? C28 1IN 902 B 1 
HETATM 45 N N5 1IN . . . C 2 3.061 25.013 4.869 1 38.59 ? N5 1IN 902 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           45 
#