data_2BPX
#
_model_server_result.job_id            TU7ZlHqVHStPMVHsSTnSeQ 
_model_server_result.datetime_utc      '2025-07-31 02:28:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bpx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":902}' 
#
_entry.id    2BPX 
#
_exptl.entry_id    2BPX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              613.789 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BPX 
_cell.length_a            58.6 
_cell.length_b            87.37 
_cell.length_c            46.64 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BPX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H47 N5 O4' 
_chem_comp.formula_weight    613.789 
_chem_comp.id                MK1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-[2(R)-HYDROXY-1(S)-INDANYL]-5-[(2(S)-TERTIARY BUTYLAMINOCARBONYL)-4(3-PYRIDYLMETHYL)PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYLPENTANAMIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     INDINAVIR 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 MK1 sing 237 n n 
N1 C9 MK1 sing 238 n n 
N1 C31 MK1 sing 239 n n 
C1 C2 MK1 sing 240 n n 
C1 H11A MK1 sing 241 n n 
C1 H12 MK1 sing 242 n n 
C2 C3 MK1 sing 243 n n 
C2 N3 MK1 sing 244 n n 
C2 H2 MK1 sing 245 n n 
C3 O1 MK1 doub 246 n n 
C3 N2 MK1 sing 247 n n 
N2 C4 MK1 sing 248 n n 
N2 HN2 MK1 sing 249 n n 
C4 C5 MK1 sing 250 n n 
C4 C6 MK1 sing 251 n n 
C4 C7 MK1 sing 252 n n 
C5 H51 MK1 sing 253 n n 
C5 H52 MK1 sing 254 n n 
C5 H53 MK1 sing 255 n n 
C6 H61 MK1 sing 256 n n 
C6 H62 MK1 sing 257 n n 
C6 H63 MK1 sing 258 n n 
C7 H71 MK1 sing 259 n n 
C7 H72 MK1 sing 260 n n 
C7 H73 MK1 sing 261 n n 
N3 C8 MK1 sing 262 n n 
N3 C10 MK1 sing 263 n n 
C8 C9 MK1 sing 264 n n 
C8 H81 MK1 sing 265 n n 
C8 H82 MK1 sing 266 n n 
C9 H91 MK1 sing 267 n n 
C9 H92 MK1 sing 268 n n 
C10 C11 MK1 sing 269 n n 
C10 H101 MK1 sing 270 n n 
C10 H102 MK1 sing 271 n n 
C11 O2 MK1 sing 272 n n 
C11 C12 MK1 sing 273 n n 
C11 H11 MK1 sing 274 n n 
O2 HO2 MK1 sing 275 n n 
C12 C13 MK1 sing 276 n n 
C12 H121 MK1 sing 277 n n 
C12 H122 MK1 sing 278 n n 
C13 C14 MK1 sing 279 n n 
C13 C21 MK1 sing 280 n n 
C13 H13 MK1 sing 281 n n 
C14 C15 MK1 sing 282 n n 
C14 H141 MK1 sing 283 n n 
C14 H142 MK1 sing 284 n n 
C15 C16 MK1 doub 285 n y 
C15 C20 MK1 sing 286 n y 
C16 C17 MK1 sing 287 n y 
C16 H16 MK1 sing 288 n n 
C17 C18 MK1 doub 289 n y 
C17 H17 MK1 sing 290 n n 
C18 C19 MK1 sing 291 n y 
C18 H18 MK1 sing 292 n n 
C19 C20 MK1 doub 293 n y 
C19 H19 MK1 sing 294 n n 
C20 H20 MK1 sing 295 n n 
C21 O3 MK1 doub 296 n n 
C21 N4 MK1 sing 297 n n 
N4 C22 MK1 sing 298 n n 
N4 HN4 MK1 sing 299 n n 
C22 C23 MK1 sing 300 n n 
C22 C30 MK1 sing 301 n n 
C22 H22 MK1 sing 302 n n 
C23 O4 MK1 sing 303 n n 
C23 C24 MK1 sing 304 n n 
C23 H23 MK1 sing 305 n n 
O4 HO4 MK1 sing 306 n n 
C24 C25 MK1 sing 307 n n 
C24 H241 MK1 sing 308 n n 
C24 H242 MK1 sing 309 n n 
C25 C26 MK1 doub 310 n y 
C25 C30 MK1 sing 311 n y 
C26 C27 MK1 sing 312 n y 
C26 H26 MK1 sing 313 n n 
C27 C28 MK1 doub 314 n y 
C27 H27 MK1 sing 315 n n 
C28 C29 MK1 sing 316 n y 
C28 H28 MK1 sing 317 n n 
C29 C30 MK1 doub 318 n y 
C29 H29 MK1 sing 319 n n 
C31 C32 MK1 sing 320 n n 
C31 H311 MK1 sing 321 n n 
C31 H312 MK1 sing 322 n n 
C32 C33 MK1 sing 323 n y 
C32 C36 MK1 doub 324 n y 
C33 N5 MK1 doub 325 n y 
C33 H33 MK1 sing 326 n n 
N5 C34 MK1 sing 327 n y 
C34 C35 MK1 doub 328 n y 
C34 H34 MK1 sing 329 n n 
C35 C36 MK1 sing 330 n y 
C35 H35 MK1 sing 331 n n 
C36 H36 MK1 sing 332 n n 
#
_atom_sites.entry_id                     2BPX 
_atom_sites.fract_transf_matrix[1][1]    0.017065 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011446 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021441 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MK1 B 1 902 902 MK1 MK1 . 
D 3 HOH A 1 305 305 HOH HOH . 
D 3 HOH A 2 307 307 HOH HOH . 
D 3 HOH A 3 308 308 HOH HOH . 
D 3 HOH A 4 309 309 HOH HOH . 
D 3 HOH A 5 315 315 HOH HOH . 
D 3 HOH A 6 324 324 HOH HOH . 
D 3 HOH A 7 325 325 HOH HOH . 
D 3 HOH A 8 327 327 HOH HOH . 
D 3 HOH A 9 328 328 HOH HOH . 
D 3 HOH A 10 329 329 HOH HOH . 
D 3 HOH A 11 331 331 HOH HOH . 
D 3 HOH A 12 345 345 HOH HOH . 
D 3 HOH A 13 386 386 HOH HOH . 
D 3 HOH A 14 389 389 HOH HOH . 
D 3 HOH A 15 394 394 HOH HOH . 
D 3 HOH A 16 406 406 HOH HOH . 
D 3 HOH A 17 408 408 HOH HOH . 
D 3 HOH A 18 416 416 HOH HOH . 
D 3 HOH A 19 439 439 HOH HOH . 
D 3 HOH A 20 457 457 HOH HOH . 
D 3 HOH A 21 468 468 HOH HOH . 
D 3 HOH A 22 501 501 HOH HOH . 
D 3 HOH A 23 503 503 HOH HOH . 
D 3 HOH A 24 510 510 HOH HOH . 
D 3 HOH A 25 529 529 HOH HOH . 
D 3 HOH A 26 553 553 HOH HOH . 
D 3 HOH A 27 561 561 HOH HOH . 
D 3 HOH A 28 567 567 HOH HOH . 
D 3 HOH A 29 572 572 HOH HOH . 
D 3 HOH A 30 620 620 HOH HOH . 
D 3 HOH A 31 622 622 HOH HOH . 
E 3 HOH B 1 301 301 HOH HOH . 
E 3 HOH B 2 306 306 HOH HOH . 
E 3 HOH B 3 310 310 HOH HOH . 
E 3 HOH B 4 312 312 HOH HOH . 
E 3 HOH B 5 314 314 HOH HOH . 
E 3 HOH B 6 318 318 HOH HOH . 
E 3 HOH B 7 319 319 HOH HOH . 
E 3 HOH B 8 326 326 HOH HOH . 
E 3 HOH B 9 332 332 HOH HOH . 
E 3 HOH B 10 333 333 HOH HOH . 
E 3 HOH B 11 334 334 HOH HOH . 
E 3 HOH B 12 340 340 HOH HOH . 
E 3 HOH B 13 346 346 HOH HOH . 
E 3 HOH B 14 347 347 HOH HOH . 
E 3 HOH B 15 348 348 HOH HOH . 
E 3 HOH B 16 350 350 HOH HOH . 
E 3 HOH B 17 354 354 HOH HOH . 
E 3 HOH B 18 355 355 HOH HOH . 
E 3 HOH B 19 356 356 HOH HOH . 
E 3 HOH B 20 358 358 HOH HOH . 
E 3 HOH B 21 367 367 HOH HOH . 
E 3 HOH B 22 369 369 HOH HOH . 
E 3 HOH B 23 370 370 HOH HOH . 
E 3 HOH B 24 374 374 HOH HOH . 
E 3 HOH B 25 375 375 HOH HOH . 
E 3 HOH B 26 379 379 HOH HOH . 
E 3 HOH B 27 383 383 HOH HOH . 
E 3 HOH B 28 388 388 HOH HOH . 
E 3 HOH B 29 392 392 HOH HOH . 
E 3 HOH B 30 393 393 HOH HOH . 
E 3 HOH B 31 395 395 HOH HOH . 
E 3 HOH B 32 401 401 HOH HOH . 
E 3 HOH B 33 405 405 HOH HOH . 
E 3 HOH B 34 410 410 HOH HOH . 
E 3 HOH B 35 414 414 HOH HOH . 
E 3 HOH B 36 419 419 HOH HOH . 
E 3 HOH B 37 425 425 HOH HOH . 
E 3 HOH B 38 443 443 HOH HOH . 
E 3 HOH B 39 461 461 HOH HOH . 
E 3 HOH B 40 471 471 HOH HOH . 
E 3 HOH B 41 500 500 HOH HOH . 
E 3 HOH B 42 506 506 HOH HOH . 
E 3 HOH B 43 509 509 HOH HOH . 
E 3 HOH B 44 515 515 HOH HOH . 
E 3 HOH B 45 525 525 HOH HOH . 
E 3 HOH B 46 526 526 HOH HOH . 
E 3 HOH B 47 531 531 HOH HOH . 
E 3 HOH B 48 532 532 HOH HOH . 
E 3 HOH B 49 549 549 HOH HOH . 
E 3 HOH B 50 564 564 HOH HOH . 
E 3 HOH B 51 568 568 HOH HOH . 
E 3 HOH B 52 591 591 HOH HOH . 
E 3 HOH B 53 613 613 HOH HOH . 
E 3 HOH B 54 621 621 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MK1 . . . C 2 9.335 24.468 3.114 1 35.39 ? N1 MK1 902 B 1 
HETATM 2 C C1 MK1 . . . C 2 9.403 24.738 4.569 1 32.28 ? C1 MK1 902 B 1 
HETATM 3 C C2 MK1 . . . C 2 10.7 25.463 4.954 1 26.29 ? C2 MK1 902 B 1 
HETATM 4 C C3 MK1 . . . C 2 10.751 25.677 6.456 1 29.21 ? C3 MK1 902 B 1 
HETATM 5 O O1 MK1 . . . C 2 11.153 24.78 7.197 1 29.5 ? O1 MK1 902 B 1 
HETATM 6 N N2 MK1 . . . C 2 10.334 26.899 6.871 1 33.48 ? N2 MK1 902 B 1 
HETATM 7 C C4 MK1 . . . C 2 10.062 27.213 8.273 1 31.25 ? C4 MK1 902 B 1 
HETATM 8 C C5 MK1 . . . C 2 9.468 28.612 8.385 1 31.81 ? C5 MK1 902 B 1 
HETATM 9 C C6 MK1 . . . C 2 11.367 27.124 9.106 1 25.98 ? C6 MK1 902 B 1 
HETATM 10 C C7 MK1 . . . C 2 8.938 26.303 8.787 1 37.75 ? C7 MK1 902 B 1 
HETATM 11 N N3 MK1 . . . C 2 11.861 24.645 4.522 1 24.92 ? N3 MK1 902 B 1 
HETATM 12 C C8 MK1 . . . C 2 11.778 24.429 3.071 1 17.02 ? C8 MK1 902 B 1 
HETATM 13 C C9 MK1 . . . C 2 10.505 23.698 2.69 1 31.62 ? C9 MK1 902 B 1 
HETATM 14 C C10 MK1 . . . C 2 13.07 25.495 4.565 1 26.05 ? C10 MK1 902 B 1 
HETATM 15 C C11 MK1 . . . C 2 14.349 24.839 5.122 1 20.57 ? C11 MK1 902 B 1 
HETATM 16 O O2 MK1 . . . C 2 15.309 25.667 4.829 1 17.97 ? O2 MK1 902 B 1 
HETATM 17 C C12 MK1 . . . C 2 14.449 24.542 6.632 1 21.51 ? C12 MK1 902 B 1 
HETATM 18 C C13 MK1 . . . C 2 15.649 23.713 7.109 1 18.27 ? C13 MK1 902 B 1 
HETATM 19 C C14 MK1 . . . C 2 15.755 23.609 8.63 1 24.39 ? C14 MK1 902 B 1 
HETATM 20 C C15 MK1 . . . C 2 16.913 22.726 9.048 1 30.6 ? C15 MK1 902 B 1 
HETATM 21 C C16 MK1 . . . C 2 18.239 22.993 8.666 1 34.16 ? C16 MK1 902 B 1 
HETATM 22 C C17 MK1 . . . C 2 19.27 22.089 8.983 1 35.52 ? C17 MK1 902 B 1 
HETATM 23 C C18 MK1 . . . C 2 18.935 20.914 9.697 1 38.31 ? C18 MK1 902 B 1 
HETATM 24 C C19 MK1 . . . C 2 17.615 20.646 10.122 1 37.64 ? C19 MK1 902 B 1 
HETATM 25 C C20 MK1 . . . C 2 16.611 21.574 9.787 1 38.69 ? C20 MK1 902 B 1 
HETATM 26 C C21 MK1 . . . C 2 15.565 22.34 6.535 1 19.05 ? C21 MK1 902 B 1 
HETATM 27 O O3 MK1 . . . C 2 14.518 21.691 6.57 1 19.49 ? O3 MK1 902 B 1 
HETATM 28 N N4 MK1 . . . C 2 16.733 21.894 6.09 1 22.29 ? N4 MK1 902 B 1 
HETATM 29 C C22 MK1 . . . C 2 16.899 20.476 5.832 1 17.01 ? C22 MK1 902 B 1 
HETATM 30 C C23 MK1 . . . C 2 18.345 19.997 6.079 1 24.81 ? C23 MK1 902 B 1 
HETATM 31 O O4 MK1 . . . C 2 19.245 20.714 5.416 1 18.12 ? O4 MK1 902 B 1 
HETATM 32 C C24 MK1 . . . C 2 18.469 18.621 5.496 1 27.21 ? C24 MK1 902 B 1 
HETATM 33 C C25 MK1 . . . C 2 17.611 18.938 4.248 1 25.09 ? C25 MK1 902 B 1 
HETATM 34 C C26 MK1 . . . C 2 17.597 18.22 3.032 1 20.53 ? C26 MK1 902 B 1 
HETATM 35 C C27 MK1 . . . C 2 16.696 18.666 2.038 1 20.51 ? C27 MK1 902 B 1 
HETATM 36 C C28 MK1 . . . C 2 15.857 19.802 2.247 1 19.69 ? C28 MK1 902 B 1 
HETATM 37 C C29 MK1 . . . C 2 15.877 20.495 3.48 1 16.72 ? C29 MK1 902 B 1 
HETATM 38 C C30 MK1 . . . C 2 16.761 20.034 4.452 1 13.75 ? C30 MK1 902 B 1 
HETATM 39 C C31 MK1 . . . C 2 8.209 23.546 2.93 1 48.68 ? C31 MK1 902 B 1 
HETATM 40 C C32 MK1 . . . C 2 6.865 24.259 2.841 1 67.03 ? C32 MK1 902 B 1 
HETATM 41 C C33 MK1 . . . C 2 6.625 25.242 1.856 1 71.12 ? C33 MK1 902 B 1 
HETATM 42 N N5 MK1 . . . C 2 5.428 25.834 1.77 1 79.67 ? N5 MK1 902 B 1 
HETATM 43 C C34 MK1 . . . C 2 4.42 25.529 2.603 1 82.04 ? C34 MK1 902 B 1 
HETATM 44 C C35 MK1 . . . C 2 4.556 24.555 3.624 1 79.27 ? C35 MK1 902 B 1 
HETATM 45 C C36 MK1 . . . C 2 5.814 23.924 3.724 1 73.41 ? C36 MK1 902 B 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           913 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           45 
#