data_2BPY # _model_server_result.job_id q-KSNmAnC5DEx9g2dXYUyw _model_server_result.datetime_utc '2024-10-19 09:28:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 2BPY # _exptl.entry_id 2BPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 727.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[2(S)-CYCLOPENTYL-1(R)-HYDROXY-3(R)METHYL]-5-[(2(S)-TERTIARY-BUTYLAMINO-CARBONYL)-4-(N1-(2)-(N-METHYLPIPERAZINYL)-3-CHLORO-PYRAZINYL-5-CARBONYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYL-PENTANAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BPY _cell.length_a 58.64 _cell.length_b 87.28 _cell.length_c 46.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C37 H55 Cl N8 O5' _chem_comp.formula_weight 727.336 _chem_comp.id 3IN _chem_comp.mon_nstd_flag . _chem_comp.name N-[2(S)-CYCLOPENTYL-1(R)-HYDROXY-3(R)METHYL]-5-[(2(S)-TERTIARY-BUTYLAMINO-CARBONYL)-4-(N1-(2)-(N-METHYLPIPERAZINYL)-3-CHLORO-PYRAZINYL-5-CARBONYL)-PIPERAZINO]-4(S)-HYDROXY-2(R)-PHENYLMETHYL-PENTANAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 3IN sing 1 n n C1 N1 3IN sing 2 n n C1 H11A 3IN sing 3 n n C1 H12 3IN sing 4 n n C2 C3 3IN sing 5 n n C2 N3 3IN sing 6 n n C2 H2 3IN sing 7 n n C3 O1 3IN doub 8 n n C3 N2 3IN sing 9 n n O4 C23 3IN sing 10 n n O4 HO4 3IN sing 11 n n O5 C31 3IN doub 12 n n N6 C32 3IN doub 13 n y N6 C33 3IN sing 14 n y C7 C4 3IN sing 15 n n C7 H71 3IN sing 16 n n C7 H72 3IN sing 17 n n C7 H73 3IN sing 18 n n C8 C9 3IN sing 19 n n C8 N3 3IN sing 20 n n C8 H81 3IN sing 21 n n C8 H82 3IN sing 22 n n C9 N1 3IN sing 23 n n C9 H91 3IN sing 24 n n C9 H92 3IN sing 25 n n C10 C11 3IN sing 26 n n C10 N3 3IN sing 27 n n C10 H101 3IN sing 28 n n C10 H102 3IN sing 29 n n C11 C12 3IN sing 30 n n C11 O2 3IN sing 31 n n C11 H11 3IN sing 32 n n C12 C13 3IN sing 33 n n C12 H121 3IN sing 34 n n C12 H122 3IN sing 35 n n C13 C14 3IN sing 36 n n C13 C21 3IN sing 37 n n C13 H13 3IN sing 38 n n C14 C15 3IN sing 39 n n C14 H141 3IN sing 40 n n C14 H142 3IN sing 41 n n C15 C16 3IN doub 42 n y C15 C20 3IN sing 43 n y C16 C17 3IN sing 44 n y C16 H16 3IN sing 45 n n C19 C20 3IN doub 46 n y C19 C18 3IN sing 47 n y C19 H19 3IN sing 48 n n C20 H20 3IN sing 49 n n C21 O3 3IN doub 50 n n C21 N4 3IN sing 51 n n C22 C30 3IN sing 52 n n C22 N4 3IN sing 53 n n C22 C23 3IN sing 54 n n C22 H22 3IN sing 55 n n C24 C23 3IN sing 56 n n C24 C25 3IN sing 57 n n C24 H241 3IN sing 58 n n C24 H242 3IN sing 59 n n C27 C26 3IN sing 60 n n C27 N8 3IN sing 61 n n C27 H271 3IN sing 62 n n C27 H272 3IN sing 63 n n C30 C25 3IN sing 64 n n C30 C29 3IN sing 65 n n C30 H30 3IN sing 66 n n C31 C32 3IN sing 67 n n C31 N1 3IN sing 68 n n C32 C36 3IN sing 69 n y C33 C34 3IN doub 70 n y C33 CL1 3IN sing 71 n n C34 N7 3IN sing 72 n y C34 N5 3IN sing 73 n n C35 N8 3IN sing 74 n n C35 C37 3IN sing 75 n n C35 H351 3IN sing 76 n n C35 H352 3IN sing 77 n n N2 C4 3IN sing 78 n n N2 HN2 3IN sing 79 n n C4 C5 3IN sing 80 n n C4 C6 3IN sing 81 n n C5 H51 3IN sing 82 n n C5 H52 3IN sing 83 n n C5 H53 3IN sing 84 n n C6 H61 3IN sing 85 n n C6 H62 3IN sing 86 n n C6 H63 3IN sing 87 n n O2 HO2 3IN sing 88 n n C17 C18 3IN doub 89 n y C17 H17 3IN sing 90 n n C18 H18 3IN sing 91 n n N4 HN4 3IN sing 92 n n C23 H23 3IN sing 93 n n C25 H251 3IN sing 94 n n C25 H252 3IN sing 95 n n C29 H291 3IN sing 96 n n C29 H292 3IN sing 97 n n C29 H293 3IN sing 98 n n N7 C36 3IN doub 99 n y C36 H36 3IN sing 100 n n C26 N5 3IN sing 101 n n C26 H261 3IN sing 102 n n C26 H262 3IN sing 103 n n N8 C28 3IN sing 104 n n C37 N5 3IN sing 105 n n C37 H371 3IN sing 106 n n C37 H372 3IN sing 107 n n C28 H281 3IN sing 108 n n C28 H282 3IN sing 109 n n C28 H283 3IN sing 110 n n # _atom_sites.entry_id 2BPY _atom_sites.fract_transf_matrix[1][1] 0.017053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011457 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3IN B 1 902 902 3IN 3IN . D 3 HOH A 1 305 305 HOH HOH . D 3 HOH A 2 307 307 HOH HOH . D 3 HOH A 3 309 309 HOH HOH . D 3 HOH A 4 314 314 HOH HOH . D 3 HOH A 5 315 315 HOH HOH . D 3 HOH A 6 324 324 HOH HOH . D 3 HOH A 7 325 325 HOH HOH . D 3 HOH A 8 327 327 HOH HOH . D 3 HOH A 9 328 328 HOH HOH . D 3 HOH A 10 329 329 HOH HOH . D 3 HOH A 11 331 331 HOH HOH . D 3 HOH A 12 332 332 HOH HOH . D 3 HOH A 13 344 344 HOH HOH . D 3 HOH A 14 345 345 HOH HOH . D 3 HOH A 15 377 377 HOH HOH . D 3 HOH A 16 384 384 HOH HOH . D 3 HOH A 17 386 386 HOH HOH . D 3 HOH A 18 389 389 HOH HOH . D 3 HOH A 19 394 394 HOH HOH . D 3 HOH A 20 406 406 HOH HOH . D 3 HOH A 21 408 408 HOH HOH . D 3 HOH A 22 416 416 HOH HOH . D 3 HOH A 23 422 422 HOH HOH . D 3 HOH A 24 439 439 HOH HOH . D 3 HOH A 25 457 457 HOH HOH . D 3 HOH A 26 501 501 HOH HOH . D 3 HOH A 27 503 503 HOH HOH . D 3 HOH A 28 510 510 HOH HOH . D 3 HOH A 29 524 524 HOH HOH . D 3 HOH A 30 529 529 HOH HOH . D 3 HOH A 31 531 531 HOH HOH . D 3 HOH A 32 532 532 HOH HOH . D 3 HOH A 33 561 561 HOH HOH . D 3 HOH A 34 567 567 HOH HOH . D 3 HOH A 35 572 572 HOH HOH . D 3 HOH A 36 575 575 HOH HOH . D 3 HOH A 37 618 618 HOH HOH . D 3 HOH A 38 619 619 HOH HOH . D 3 HOH A 39 620 620 HOH HOH . E 3 HOH B 1 301 301 HOH HOH . E 3 HOH B 2 304 304 HOH HOH . E 3 HOH B 3 306 306 HOH HOH . E 3 HOH B 4 308 308 HOH HOH . E 3 HOH B 5 312 312 HOH HOH . E 3 HOH B 6 313 313 HOH HOH . E 3 HOH B 7 316 316 HOH HOH . E 3 HOH B 8 317 317 HOH HOH . E 3 HOH B 9 318 318 HOH HOH . E 3 HOH B 10 319 319 HOH HOH . E 3 HOH B 11 321 321 HOH HOH . E 3 HOH B 12 323 323 HOH HOH . E 3 HOH B 13 326 326 HOH HOH . E 3 HOH B 14 333 333 HOH HOH . E 3 HOH B 15 334 334 HOH HOH . E 3 HOH B 16 335 335 HOH HOH . E 3 HOH B 17 338 338 HOH HOH . E 3 HOH B 18 339 339 HOH HOH . E 3 HOH B 19 340 340 HOH HOH . E 3 HOH B 20 346 346 HOH HOH . E 3 HOH B 21 347 347 HOH HOH . E 3 HOH B 22 348 348 HOH HOH . E 3 HOH B 23 349 349 HOH HOH . E 3 HOH B 24 350 350 HOH HOH . E 3 HOH B 25 354 354 HOH HOH . E 3 HOH B 26 355 355 HOH HOH . E 3 HOH B 27 356 356 HOH HOH . E 3 HOH B 28 357 357 HOH HOH . E 3 HOH B 29 358 358 HOH HOH . E 3 HOH B 30 359 359 HOH HOH . E 3 HOH B 31 362 362 HOH HOH . E 3 HOH B 32 364 364 HOH HOH . E 3 HOH B 33 367 367 HOH HOH . E 3 HOH B 34 369 369 HOH HOH . E 3 HOH B 35 370 370 HOH HOH . E 3 HOH B 36 374 374 HOH HOH . E 3 HOH B 37 375 375 HOH HOH . E 3 HOH B 38 376 376 HOH HOH . E 3 HOH B 39 379 379 HOH HOH . E 3 HOH B 40 381 381 HOH HOH . E 3 HOH B 41 383 383 HOH HOH . E 3 HOH B 42 387 387 HOH HOH . E 3 HOH B 43 388 388 HOH HOH . E 3 HOH B 44 392 392 HOH HOH . E 3 HOH B 45 393 393 HOH HOH . E 3 HOH B 46 395 395 HOH HOH . E 3 HOH B 47 400 400 HOH HOH . E 3 HOH B 48 401 401 HOH HOH . E 3 HOH B 49 405 405 HOH HOH . E 3 HOH B 50 410 410 HOH HOH . E 3 HOH B 51 414 414 HOH HOH . E 3 HOH B 52 419 419 HOH HOH . E 3 HOH B 53 420 420 HOH HOH . E 3 HOH B 54 425 425 HOH HOH . E 3 HOH B 55 436 436 HOH HOH . E 3 HOH B 56 443 443 HOH HOH . E 3 HOH B 57 461 461 HOH HOH . E 3 HOH B 58 468 468 HOH HOH . E 3 HOH B 59 471 471 HOH HOH . E 3 HOH B 60 500 500 HOH HOH . E 3 HOH B 61 505 505 HOH HOH . E 3 HOH B 62 506 506 HOH HOH . E 3 HOH B 63 509 509 HOH HOH . E 3 HOH B 64 514 514 HOH HOH . E 3 HOH B 65 515 515 HOH HOH . E 3 HOH B 66 517 517 HOH HOH . E 3 HOH B 67 525 525 HOH HOH . E 3 HOH B 68 526 526 HOH HOH . E 3 HOH B 69 549 549 HOH HOH . E 3 HOH B 70 553 553 HOH HOH . E 3 HOH B 71 564 564 HOH HOH . E 3 HOH B 72 568 568 HOH HOH . E 3 HOH B 73 591 591 HOH HOH . E 3 HOH B 74 595 595 HOH HOH . E 3 HOH B 75 613 613 HOH HOH . E 3 HOH B 76 617 617 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3IN . . . C 2 8.922 24.492 4.075 1 12.91 ? C1 3IN 902 B 1 HETATM 2 C C2 3IN . . . C 2 10.203 25.195 4.552 1 9.05 ? C2 3IN 902 B 1 HETATM 3 C C3 3IN . . . C 2 10.254 25.142 6.047 1 12.73 ? C3 3IN 902 B 1 HETATM 4 O O4 3IN . . . C 2 18.566 20.152 5.132 1 15.13 ? O4 3IN 902 B 1 HETATM 5 O O5 3IN . . . C 2 7.922 25.431 0.74 1 24.93 ? O5 3IN 902 B 1 HETATM 6 N N6 3IN . . . C 2 5.7 24.509 3.256 1 25.89 ? N6 3IN 902 B 1 HETATM 7 C C7 3IN . . . C 2 8.71 25.631 8.695 1 11.67 ? C7 3IN 902 B 1 HETATM 8 C C8 3IN . . . C 2 11.309 24.584 2.45 1 10.69 ? C8 3IN 902 B 1 HETATM 9 C C9 3IN . . . C 2 9.995 23.969 1.965 1 15.72 ? C9 3IN 902 B 1 HETATM 10 C C10 3IN . . . C 2 12.667 25.236 4.162 1 8.93 ? C10 3IN 902 B 1 HETATM 11 C C11 3IN . . . C 2 13.806 24.361 4.671 1 6.53 ? C11 3IN 902 B 1 HETATM 12 C C12 3IN . . . C 2 13.844 23.956 6.13 1 6.34 ? C12 3IN 902 B 1 HETATM 13 C C13 3IN . . . C 2 15.061 23.025 6.448 1 9.36 ? C13 3IN 902 B 1 HETATM 14 C C14 3IN . . . C 2 15.092 22.859 7.979 1 12.05 ? C14 3IN 902 B 1 HETATM 15 C C15 3IN . . . C 2 16.163 21.913 8.437 1 13.33 ? C15 3IN 902 B 1 HETATM 16 C C16 3IN . . . C 2 17.528 22.151 8.212 1 12.59 ? C16 3IN 902 B 1 HETATM 17 C C19 3IN . . . C 2 16.667 19.852 9.625 1 15.84 ? C19 3IN 902 B 1 HETATM 18 C C20 3IN . . . C 2 15.719 20.743 9.107 1 16.68 ? C20 3IN 902 B 1 HETATM 19 C C21 3IN . . . C 2 14.878 21.621 5.735 1 10.48 ? C21 3IN 902 B 1 HETATM 20 C C22 3IN . . . C 2 16.258 19.747 4.757 1 14.62 ? C22 3IN 902 B 1 HETATM 21 C C24 3IN . . . C 2 17.625 17.981 4.395 1 14.51 ? C24 3IN 902 B 1 HETATM 22 C C27 3IN . . . C 2 0.696 27.746 2.565 1 60.63 ? C27 3IN 902 B 1 HETATM 23 C C30 3IN . . . C 2 15.647 18.996 3.5 1 16.72 ? C30 3IN 902 B 1 HETATM 24 C C31 3IN . . . C 2 7.753 25.158 1.929 1 20.06 ? C31 3IN 902 B 1 HETATM 25 C C32 3IN . . . C 2 6.428 25.457 2.583 1 23.34 ? C32 3IN 902 B 1 HETATM 26 C C33 3IN . . . C 2 4.437 24.783 3.681 1 35 ? C33 3IN 902 B 1 HETATM 27 C C34 3IN . . . C 2 3.873 26.055 3.457 1 39.42 ? C34 3IN 902 B 1 HETATM 28 C C35 3IN . . . C 2 1.043 27.984 4.944 1 59.86 ? C35 3IN 902 B 1 HETATM 29 N N1 3IN . . . C 2 8.828 24.575 2.626 1 17.2 ? N1 3IN 902 B 1 HETATM 30 O O1 3IN . . . C 2 10.629 24.122 6.632 1 11.92 ? O1 3IN 902 B 1 HETATM 31 N N2 3IN . . . C 2 9.827 26.299 6.638 1 11.34 ? N2 3IN 902 B 1 HETATM 32 C C4 3IN . . . C 2 9.774 26.536 8.074 1 11.7 ? C4 3IN 902 B 1 HETATM 33 C C5 3IN . . . C 2 9.393 28.021 8.33 1 14.45 ? C5 3IN 902 B 1 HETATM 34 C C6 3IN . . . C 2 11.124 26.336 8.739 1 11.72 ? C6 3IN 902 B 1 HETATM 35 N N3 3IN . . . C 2 11.387 24.546 3.934 1 11.6 ? N3 3IN 902 B 1 HETATM 36 O O2 3IN . . . C 2 14.975 25.088 4.426 1 9.46 ? O2 3IN 902 B 1 HETATM 37 C C17 3IN . . . C 2 18.482 21.264 8.744 1 14.51 ? C17 3IN 902 B 1 HETATM 38 C C18 3IN . . . C 2 18.018 20.171 9.482 1 14.78 ? C18 3IN 902 B 1 HETATM 39 O O3 3IN . . . C 2 13.784 21.05 5.73 1 11.34 ? O3 3IN 902 B 1 HETATM 40 N N4 3IN . . . C 2 15.999 21.151 5.186 1 11.28 ? N4 3IN 902 B 1 HETATM 41 C C23 3IN . . . C 2 17.569 19.157 5.39 1 14.92 ? C23 3IN 902 B 1 HETATM 42 C C25 3IN . . . C 2 16.947 18.346 3.161 1 16.92 ? C25 3IN 902 B 1 HETATM 43 C C29 3IN . . . C 2 15.155 19.96 2.454 1 15.43 ? C29 3IN 902 B 1 HETATM 44 N N7 3IN . . . C 2 4.618 26.987 2.854 1 34.71 ? N7 3IN 902 B 1 HETATM 45 C C36 3IN . . . C 2 5.843 26.728 2.401 1 27.61 ? C36 3IN 902 B 1 HETATM 46 CL CL1 3IN . . . C 2 3.501 23.551 4.448 1 13.32 ? CL1 3IN 902 B 1 HETATM 47 C C26 3IN . . . C 2 1.636 26.5 2.492 1 55.54 ? C26 3IN 902 B 1 HETATM 48 N N8 3IN . . . C 2 0.008 27.82 3.894 1 61.66 ? N8 3IN 902 B 1 HETATM 49 C C37 3IN . . . C 2 1.986 26.737 4.987 1 55.7 ? C37 3IN 902 B 1 HETATM 50 N N5 3IN . . . C 2 2.555 26.411 3.657 1 49.8 ? N5 3IN 902 B 1 HETATM 51 C C28 3IN . . . C 2 -0.957 28.939 3.992 1 63.18 ? C28 3IN 902 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 51 #