data_2BR5
#
_model_server_result.job_id            qCC5QSO7-1tw6sIHUCC5rQ 
_model_server_result.datetime_utc      '2024-11-04 23:00:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2br5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":301}' 
#
_entry.id    2BR5 
#
_exptl.entry_id    2BR5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BR5 
_cell.length_a            90.912 
_cell.length_b            102.52 
_cell.length_c            181.411 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BR5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     2BR5 
_atom_sites.fract_transf_matrix[1][1]    0.011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009754 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SAH A 1 301 301 SAH SAH . 
H 2 SAH B 1 301 301 SAH SAH . 
I 2 SAH C 1 301 301 SAH SAH . 
J 2 SAH D 1 301 301 SAH SAH . 
K 2 SAH E 1 301 301 SAH SAH . 
L 3 HOH A 1 2001 2001 HOH HOH . 
L 3 HOH A 2 2002 2002 HOH HOH . 
L 3 HOH A 3 2003 2003 HOH HOH . 
L 3 HOH A 4 2004 2004 HOH HOH . 
L 3 HOH A 5 2005 2005 HOH HOH . 
L 3 HOH A 6 2006 2006 HOH HOH . 
L 3 HOH A 7 2007 2007 HOH HOH . 
L 3 HOH A 8 2008 2008 HOH HOH . 
L 3 HOH A 9 2009 2009 HOH HOH . 
L 3 HOH A 10 2010 2010 HOH HOH . 
L 3 HOH A 11 2011 2011 HOH HOH . 
L 3 HOH A 12 2012 2012 HOH HOH . 
L 3 HOH A 13 2013 2013 HOH HOH . 
L 3 HOH A 14 2014 2014 HOH HOH . 
L 3 HOH A 15 2015 2015 HOH HOH . 
L 3 HOH A 16 2016 2016 HOH HOH . 
L 3 HOH A 17 2017 2017 HOH HOH . 
M 3 HOH B 1 2001 2001 HOH HOH . 
M 3 HOH B 2 2002 2002 HOH HOH . 
M 3 HOH B 3 2003 2003 HOH HOH . 
M 3 HOH B 4 2004 2004 HOH HOH . 
M 3 HOH B 5 2005 2005 HOH HOH . 
M 3 HOH B 6 2006 2006 HOH HOH . 
M 3 HOH B 7 2007 2007 HOH HOH . 
M 3 HOH B 8 2008 2008 HOH HOH . 
M 3 HOH B 9 2009 2009 HOH HOH . 
M 3 HOH B 10 2010 2010 HOH HOH . 
M 3 HOH B 11 2011 2011 HOH HOH . 
M 3 HOH B 12 2012 2012 HOH HOH . 
M 3 HOH B 13 2013 2013 HOH HOH . 
M 3 HOH B 14 2014 2014 HOH HOH . 
M 3 HOH B 15 2015 2015 HOH HOH . 
M 3 HOH B 16 2016 2016 HOH HOH . 
M 3 HOH B 17 2017 2017 HOH HOH . 
M 3 HOH B 18 2018 2018 HOH HOH . 
M 3 HOH B 19 2019 2019 HOH HOH . 
M 3 HOH B 20 2020 2020 HOH HOH . 
M 3 HOH B 21 2021 2021 HOH HOH . 
M 3 HOH B 22 2022 2022 HOH HOH . 
M 3 HOH B 23 2023 2023 HOH HOH . 
M 3 HOH B 24 2024 2024 HOH HOH . 
M 3 HOH B 25 2025 2025 HOH HOH . 
M 3 HOH B 26 2026 2026 HOH HOH . 
M 3 HOH B 27 2027 2027 HOH HOH . 
M 3 HOH B 28 2028 2028 HOH HOH . 
N 3 HOH C 1 2001 2001 HOH HOH . 
N 3 HOH C 2 2002 2002 HOH HOH . 
N 3 HOH C 3 2003 2003 HOH HOH . 
N 3 HOH C 4 2004 2004 HOH HOH . 
N 3 HOH C 5 2005 2005 HOH HOH . 
N 3 HOH C 6 2006 2006 HOH HOH . 
N 3 HOH C 7 2007 2007 HOH HOH . 
N 3 HOH C 8 2008 2008 HOH HOH . 
N 3 HOH C 9 2009 2009 HOH HOH . 
N 3 HOH C 10 2010 2010 HOH HOH . 
N 3 HOH C 11 2011 2011 HOH HOH . 
N 3 HOH C 12 2012 2012 HOH HOH . 
N 3 HOH C 13 2013 2013 HOH HOH . 
N 3 HOH C 14 2014 2014 HOH HOH . 
N 3 HOH C 15 2015 2015 HOH HOH . 
N 3 HOH C 16 2016 2016 HOH HOH . 
N 3 HOH C 17 2017 2017 HOH HOH . 
N 3 HOH C 18 2018 2018 HOH HOH . 
N 3 HOH C 19 2019 2019 HOH HOH . 
N 3 HOH C 20 2020 2020 HOH HOH . 
N 3 HOH C 21 2021 2021 HOH HOH . 
N 3 HOH C 22 2022 2022 HOH HOH . 
N 3 HOH C 23 2023 2023 HOH HOH . 
N 3 HOH C 24 2024 2024 HOH HOH . 
N 3 HOH C 25 2025 2025 HOH HOH . 
N 3 HOH C 26 2026 2026 HOH HOH . 
N 3 HOH C 27 2027 2027 HOH HOH . 
N 3 HOH C 28 2028 2028 HOH HOH . 
N 3 HOH C 29 2029 2029 HOH HOH . 
N 3 HOH C 30 2030 2030 HOH HOH . 
N 3 HOH C 31 2031 2031 HOH HOH . 
N 3 HOH C 32 2032 2032 HOH HOH . 
N 3 HOH C 33 2033 2033 HOH HOH . 
N 3 HOH C 34 2034 2034 HOH HOH . 
N 3 HOH C 35 2035 2035 HOH HOH . 
O 3 HOH D 1 2001 2001 HOH HOH . 
O 3 HOH D 2 2002 2002 HOH HOH . 
O 3 HOH D 3 2003 2003 HOH HOH . 
O 3 HOH D 4 2004 2004 HOH HOH . 
O 3 HOH D 5 2005 2005 HOH HOH . 
O 3 HOH D 6 2006 2006 HOH HOH . 
O 3 HOH D 7 2007 2007 HOH HOH . 
O 3 HOH D 8 2008 2008 HOH HOH . 
O 3 HOH D 9 2009 2009 HOH HOH . 
P 3 HOH E 1 2001 2001 HOH HOH . 
P 3 HOH E 2 2002 2002 HOH HOH . 
P 3 HOH E 3 2003 2003 HOH HOH . 
P 3 HOH E 4 2004 2004 HOH HOH . 
P 3 HOH E 5 2005 2005 HOH HOH . 
P 3 HOH E 6 2006 2006 HOH HOH . 
P 3 HOH E 7 2007 2007 HOH HOH . 
P 3 HOH E 8 2008 2008 HOH HOH . 
P 3 HOH E 9 2009 2009 HOH HOH . 
P 3 HOH E 10 2010 2010 HOH HOH . 
P 3 HOH E 11 2011 2011 HOH HOH . 
P 3 HOH E 12 2012 2012 HOH HOH . 
P 3 HOH E 13 2013 2013 HOH HOH . 
P 3 HOH E 14 2014 2014 HOH HOH . 
Q 3 HOH F 1 2001 2001 HOH HOH . 
Q 3 HOH F 2 2002 2002 HOH HOH . 
Q 3 HOH F 3 2003 2003 HOH HOH . 
Q 3 HOH F 4 2004 2004 HOH HOH . 
Q 3 HOH F 5 2005 2005 HOH HOH . 
Q 3 HOH F 6 2006 2006 HOH HOH . 
Q 3 HOH F 7 2007 2007 HOH HOH . 
Q 3 HOH F 8 2008 2008 HOH HOH . 
Q 3 HOH F 9 2009 2009 HOH HOH . 
Q 3 HOH F 10 2010 2010 HOH HOH . 
Q 3 HOH F 11 2011 2011 HOH HOH . 
Q 3 HOH F 12 2012 2012 HOH HOH . 
Q 3 HOH F 13 2013 2013 HOH HOH . 
Q 3 HOH F 14 2014 2014 HOH HOH . 
Q 3 HOH F 15 2015 2015 HOH HOH . 
Q 3 HOH F 16 2016 2016 HOH HOH . 
Q 3 HOH F 17 2017 2017 HOH HOH . 
Q 3 HOH F 18 2018 2018 HOH HOH . 
Q 3 HOH F 19 2019 2019 HOH HOH . 
Q 3 HOH F 20 2020 2020 HOH HOH . 
Q 3 HOH F 21 2021 2021 HOH HOH . 
Q 3 HOH F 22 2022 2022 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . J 2 86.939 59.475 76.347 1 103.84 ? N SAH 301 D 1 
HETATM 2 C CA SAH . . . J 2 86.887 60.921 76.166 1 104.01 ? CA SAH 301 D 1 
HETATM 3 C CB SAH . . . J 2 87.098 61.263 74.698 1 104.15 ? CB SAH 301 D 1 
HETATM 4 C CG SAH . . . J 2 88.531 61.18 74.183 1 104.57 ? CG SAH 301 D 1 
HETATM 5 S SD SAH . . . J 2 88.676 61.999 72.568 1 105 ? SD SAH 301 D 1 
HETATM 6 C C SAH . . . J 2 85.546 61.508 76.619 1 103.87 ? C SAH 301 D 1 
HETATM 7 O O SAH . . . J 2 84.516 60.837 76.655 1 103.87 ? O SAH 301 D 1 
HETATM 8 O OXT SAH . . . J 2 85.41 62.678 76.978 1 103.59 ? OXT SAH 301 D 1 
HETATM 9 C C5' SAH . . . J 2 90.343 61.359 72.229 1 105.6 ? C5' SAH 301 D 1 
HETATM 10 C C4' SAH . . . J 2 91.488 62.193 72.805 1 105.61 ? C4' SAH 301 D 1 
HETATM 11 O O4' SAH . . . J 2 92.69 61.474 72.615 1 105.62 ? O4' SAH 301 D 1 
HETATM 12 C C3' SAH . . . J 2 91.674 63.557 72.147 1 105.64 ? C3' SAH 301 D 1 
HETATM 13 O O3' SAH . . . J 2 91.69 64.573 73.121 1 105.46 ? O3' SAH 301 D 1 
HETATM 14 C C2' SAH . . . J 2 93.01 63.506 71.437 1 105.67 ? C2' SAH 301 D 1 
HETATM 15 O O2' SAH . . . J 2 93.764 64.67 71.692 1 105.35 ? O2' SAH 301 D 1 
HETATM 16 C C1' SAH . . . J 2 93.689 62.273 72.018 1 105.74 ? C1' SAH 301 D 1 
HETATM 17 N N9 SAH . . . J 2 94.433 61.467 71.036 1 105.7 ? N9 SAH 301 D 1 
HETATM 18 C C8 SAH . . . J 2 94.042 61.108 69.774 1 105.96 ? C8 SAH 301 D 1 
HETATM 19 N N7 SAH . . . J 2 95.027 60.36 69.228 1 106.13 ? N7 SAH 301 D 1 
HETATM 20 C C5 SAH . . . J 2 96.033 60.231 70.123 1 106.06 ? C5 SAH 301 D 1 
HETATM 21 C C6 SAH . . . J 2 97.265 59.58 70.083 1 105.74 ? C6 SAH 301 D 1 
HETATM 22 N N6 SAH . . . J 2 97.631 58.914 68.995 1 105.53 ? N6 SAH 301 D 1 
HETATM 23 N N1 SAH . . . J 2 98.107 59.624 71.178 1 105.55 ? N1 SAH 301 D 1 
HETATM 24 C C2 SAH . . . J 2 97.725 60.315 72.311 1 105.43 ? C2 SAH 301 D 1 
HETATM 25 N N3 SAH . . . J 2 96.504 60.959 72.341 1 105.72 ? N3 SAH 301 D 1 
HETATM 26 C C4 SAH . . . J 2 95.669 60.921 71.268 1 105.9 ? C4 SAH 301 D 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#