data_2BRD
#
_model_server_result.job_id            gHa9gQsVaQ-o8MypsOeXxA 
_model_server_result.datetime_utc      '2024-11-28 08:04:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2brd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":263}' 
#
_entry.id    2BRD 
#
_exptl.entry_id    2BRD 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              887.195 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2BRD 
_cell.length_a            62.45 
_cell.length_b            62.45 
_cell.length_c            100.9 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              271 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.312 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C46 H96 O11 P2' 
_chem_comp.formula_weight    887.195 
_chem_comp.id                DPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DPHPG 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DPG sing 70 n n 
C1 O1 DPG sing 71 n n 
C1 H11 DPG sing 72 n n 
C1 H12 DPG sing 73 n n 
C2 C3 DPG sing 74 n n 
C2 O2 DPG sing 75 n n 
C2 H2 DPG sing 76 n n 
C3 O3 DPG sing 77 n n 
C3 H31 DPG sing 78 n n 
C3 H32 DPG sing 79 n n 
C4 C5 DPG sing 80 n n 
C4 O6 DPG sing 81 n n 
C4 H41 DPG sing 82 n n 
C4 H42 DPG sing 83 n n 
C5 C6 DPG sing 84 n n 
C5 O7 DPG sing 85 n n 
C5 H5 DPG sing 86 n n 
C6 O8 DPG sing 87 n n 
C6 H61 DPG sing 88 n n 
C6 H62 DPG sing 89 n n 
C11 C12 DPG sing 90 n n 
C11 O1 DPG sing 91 n n 
C11 H111 DPG sing 92 n n 
C11 H112 DPG sing 93 n n 
C12 C13 DPG sing 94 n n 
C12 H121 DPG sing 95 n n 
C12 H122 DPG sing 96 n n 
C13 C14 DPG sing 97 n n 
C13 C15 DPG sing 98 n n 
C13 H13 DPG sing 99 n n 
C14 H141 DPG sing 100 n n 
C14 H142 DPG sing 101 n n 
C14 H143 DPG sing 102 n n 
C15 C16 DPG sing 103 n n 
C15 H151 DPG sing 104 n n 
C15 H152 DPG sing 105 n n 
C16 C17 DPG sing 106 n n 
C16 H161 DPG sing 107 n n 
C16 H162 DPG sing 108 n n 
C17 C18 DPG sing 109 n n 
C17 H171 DPG sing 110 n n 
C17 H172 DPG sing 111 n n 
C18 C19 DPG sing 112 n n 
C18 C20 DPG sing 113 n n 
C18 H18 DPG sing 114 n n 
C19 H191 DPG sing 115 n n 
C19 H192 DPG sing 116 n n 
C19 H193 DPG sing 117 n n 
C20 C21 DPG sing 118 n n 
C20 H201 DPG sing 119 n n 
C20 H202 DPG sing 120 n n 
C21 C22 DPG sing 121 n n 
C21 H211 DPG sing 122 n n 
C21 H212 DPG sing 123 n n 
C22 C23 DPG sing 124 n n 
C22 H221 DPG sing 125 n n 
C22 H222 DPG sing 126 n n 
C23 C24 DPG sing 127 n n 
C23 C25 DPG sing 128 n n 
C23 H23 DPG sing 129 n n 
C24 H241 DPG sing 130 n n 
C24 H242 DPG sing 131 n n 
C24 H243 DPG sing 132 n n 
C25 C26 DPG sing 133 n n 
C25 H251 DPG sing 134 n n 
C25 H252 DPG sing 135 n n 
C26 C27 DPG sing 136 n n 
C26 H261 DPG sing 137 n n 
C26 H262 DPG sing 138 n n 
C27 C28 DPG sing 139 n n 
C27 H271 DPG sing 140 n n 
C27 H272 DPG sing 141 n n 
C28 C29 DPG sing 142 n n 
C28 C30 DPG sing 143 n n 
C28 H28 DPG sing 144 n n 
C29 H291 DPG sing 145 n n 
C29 H292 DPG sing 146 n n 
C29 H293 DPG sing 147 n n 
C30 H301 DPG sing 148 n n 
C30 H302 DPG sing 149 n n 
C30 H303 DPG sing 150 n n 
C41 C42 DPG sing 151 n n 
C41 O2 DPG sing 152 n n 
C41 H411 DPG sing 153 n n 
C41 H412 DPG sing 154 n n 
C42 C43 DPG sing 155 n n 
C42 H421 DPG sing 156 n n 
C42 H422 DPG sing 157 n n 
C43 C44 DPG sing 158 n n 
C43 C45 DPG sing 159 n n 
C43 H43 DPG sing 160 n n 
C44 H441 DPG sing 161 n n 
C44 H442 DPG sing 162 n n 
C44 H443 DPG sing 163 n n 
C45 C46 DPG sing 164 n n 
C45 H451 DPG sing 165 n n 
C45 H452 DPG sing 166 n n 
C46 C47 DPG sing 167 n n 
C46 H461 DPG sing 168 n n 
C46 H462 DPG sing 169 n n 
C47 C48 DPG sing 170 n n 
C47 H471 DPG sing 171 n n 
C47 H472 DPG sing 172 n n 
C48 C49 DPG sing 173 n n 
C48 C50 DPG sing 174 n n 
C48 H48 DPG sing 175 n n 
C49 H491 DPG sing 176 n n 
C49 H492 DPG sing 177 n n 
C49 H493 DPG sing 178 n n 
C50 C51 DPG sing 179 n n 
C50 H501 DPG sing 180 n n 
C50 H502 DPG sing 181 n n 
C51 C52 DPG sing 182 n n 
C51 H511 DPG sing 183 n n 
C51 H512 DPG sing 184 n n 
C52 C53 DPG sing 185 n n 
C52 H521 DPG sing 186 n n 
C52 H522 DPG sing 187 n n 
C53 C54 DPG sing 188 n n 
C53 C55 DPG sing 189 n n 
C53 H53 DPG sing 190 n n 
C54 H541 DPG sing 191 n n 
C54 H542 DPG sing 192 n n 
C54 H543 DPG sing 193 n n 
C55 C56 DPG sing 194 n n 
C55 H551 DPG sing 195 n n 
C55 H552 DPG sing 196 n n 
C56 C57 DPG sing 197 n n 
C56 H561 DPG sing 198 n n 
C56 H562 DPG sing 199 n n 
C57 C58 DPG sing 200 n n 
C57 H571 DPG sing 201 n n 
C57 H572 DPG sing 202 n n 
C58 C59 DPG sing 203 n n 
C58 C60 DPG sing 204 n n 
C58 H58 DPG sing 205 n n 
C59 H591 DPG sing 206 n n 
C59 H592 DPG sing 207 n n 
C59 H593 DPG sing 208 n n 
C60 H601 DPG sing 209 n n 
C60 H602 DPG sing 210 n n 
C60 H603 DPG sing 211 n n 
O3 P1 DPG sing 212 n n 
O4 P1 DPG doub 213 n n 
O5 P1 DPG sing 214 n n 
O5 HO5 DPG sing 215 n n 
O6 P1 DPG sing 216 n n 
O7 HO7 DPG sing 217 n n 
O8 P2 DPG sing 218 n n 
O9 P2 DPG doub 219 n n 
O10 P2 DPG sing 220 n n 
O10 HO0 DPG sing 221 n n 
O11 P2 DPG sing 222 n n 
O11 HO1 DPG sing 223 n n 
#
_atom_sites.entry_id                     2BRD 
_atom_sites.fract_transf_matrix[1][1]    0.016013 
_atom_sites.fract_transf_matrix[1][2]    0.009245 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DPG A 1 261 261 DPG DPG . 
C 2 DPG A 1 262 262 DPG DPG . 
D 2 DPG A 1 263 263 DPG DPG . 
E 2 DPG A 1 264 264 DPG DPG . 
F 2 DPG A 1 265 265 DPG DPG . 
G 2 DPG A 1 266 266 DPG DPG . 
H 2 DPG A 1 267 267 DPG DPG . 
I 2 DPG A 1 268 268 DPG DPG . 
J 2 DPG A 1 269 269 DPG DPG . 
K 2 DPG A 1 270 270 DPG DPG . 
L 3 RET A 1 271 216 RET RET . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DPG . . . D 2 33.521 1.934 -12.702 1 224.36 ? C1 DPG 263 A 1 
HETATM 2 C C2 DPG . . . D 2 33.606 3.429 -12.384 1 215.74 ? C2 DPG 263 A 1 
HETATM 3 C C3 DPG . . . D 2 35.015 3.952 -12.65 1 222.93 ? C3 DPG 263 A 1 
HETATM 4 C C4 DPG . . . D 2 36.59 6.606 -15.41 1 305.45 ? C4 DPG 263 A 1 
HETATM 5 C C5 DPG . . . D 2 35.825 6.724 -16.797 1 350.99 ? C5 DPG 263 A 1 
HETATM 6 C C6 DPG . . . D 2 35.252 5.33 -17.18 1 363.89 ? C6 DPG 263 A 1 
HETATM 7 C C11 DPG . . . D 2 33.5 0.54 -10.741 1 175 ? C11 DPG 263 A 1 
HETATM 8 C C12 DPG . . . D 2 32.898 0.824 -9.357 1 146.37 ? C12 DPG 263 A 1 
HETATM 9 C C13 DPG . . . D 2 33.974 0.861 -8.306 1 128.64 ? C13 DPG 263 A 1 
HETATM 10 C C14 DPG . . . D 2 33.412 1.719 -7.217 1 114.37 ? C14 DPG 263 A 1 
HETATM 11 C C15 DPG . . . D 2 34.273 -0.542 -7.843 1 122.04 ? C15 DPG 263 A 1 
HETATM 12 C C16 DPG . . . D 2 35.09 -0.757 -6.566 1 107.99 ? C16 DPG 263 A 1 
HETATM 13 C C17 DPG . . . D 2 34.885 -2.021 -5.696 1 102.17 ? C17 DPG 263 A 1 
HETATM 14 C C18 DPG . . . D 2 34.953 -1.96 -4.134 1 100.07 ? C18 DPG 263 A 1 
HETATM 15 C C19 DPG . . . D 2 35.813 -0.819 -3.593 1 102.02 ? C19 DPG 263 A 1 
HETATM 16 C C20 DPG . . . D 2 35.399 -3.269 -3.44 1 102.83 ? C20 DPG 263 A 1 
HETATM 17 C C21 DPG . . . D 2 34.85 -3.284 -2.019 1 116.18 ? C21 DPG 263 A 1 
HETATM 18 C C22 DPG . . . D 2 35.793 -3.959 -0.979 1 132.92 ? C22 DPG 263 A 1 
HETATM 19 C C23 DPG . . . D 2 35.995 -3.411 0.519 1 168.18 ? C23 DPG 263 A 1 
HETATM 20 C C24 DPG . . . D 2 34.627 -3.024 1.099 1 185.55 ? C24 DPG 263 A 1 
HETATM 21 C C25 DPG . . . D 2 36.588 -4.496 1.479 1 198.11 ? C25 DPG 263 A 1 
HETATM 22 C C26 DPG . . . D 2 37.21 -4.069 2.791 1 248.9 ? C26 DPG 263 A 1 
HETATM 23 C C27 DPG . . . D 2 37.478 -5.339 3.524 1 282.47 ? C27 DPG 263 A 1 
HETATM 24 C C28 DPG . . . D 2 38.469 -5.102 4.612 1 339.5 ? C28 DPG 263 A 1 
HETATM 25 C C29 DPG . . . D 2 38.158 -6.035 5.766 1 409.79 ? C29 DPG 263 A 1 
HETATM 26 C C30 DPG . . . D 2 39.922 -5.247 4.138 1 313.58 ? C30 DPG 263 A 1 
HETATM 27 C C41 DPG . . . D 2 34.425 4.139 -10.239 1 163.96 ? C41 DPG 263 A 1 
HETATM 28 C C42 DPG . . . D 2 33.784 4.938 -9.069 1 141.15 ? C42 DPG 263 A 1 
HETATM 29 C C43 DPG . . . D 2 34.478 5.008 -7.674 1 119.83 ? C43 DPG 263 A 1 
HETATM 30 C C44 DPG . . . D 2 35.631 6.057 -7.809 1 121.59 ? C44 DPG 263 A 1 
HETATM 31 C C45 DPG . . . D 2 33.423 5.24 -6.513 1 107.55 ? C45 DPG 263 A 1 
HETATM 32 C C46 DPG . . . D 2 33.839 5.095 -4.997 1 99.85 ? C46 DPG 263 A 1 
HETATM 33 C C47 DPG . . . D 2 32.671 5.207 -3.972 1 100.5 ? C47 DPG 263 A 1 
HETATM 34 C C48 DPG . . . D 2 32.934 5.002 -2.466 1 110.83 ? C48 DPG 263 A 1 
HETATM 35 C C49 DPG . . . D 2 33.963 6.022 -1.937 1 117.28 ? C49 DPG 263 A 1 
HETATM 36 C C50 DPG . . . D 2 33.416 3.568 -2.237 1 113.44 ? C50 DPG 263 A 1 
HETATM 37 C C51 DPG . . . D 2 33.146 3.023 -0.832 1 135.79 ? C51 DPG 263 A 1 
HETATM 38 C C52 DPG . . . D 2 33.118 1.492 -0.787 1 136.69 ? C52 DPG 263 A 1 
HETATM 39 C C53 DPG . . . D 2 32.365 0.83 0.443 1 166.06 ? C53 DPG 263 A 1 
HETATM 40 C C54 DPG . . . D 2 31.637 -0.56 0.238 1 160.52 ? C54 DPG 263 A 1 
HETATM 41 C C55 DPG . . . D 2 33.323 0.784 1.689 1 205.46 ? C55 DPG 263 A 1 
HETATM 42 C C56 DPG . . . D 2 32.611 0.669 3.059 1 260.73 ? C56 DPG 263 A 1 
HETATM 43 C C57 DPG . . . D 2 33.525 0.355 4.241 1 319.07 ? C57 DPG 263 A 1 
HETATM 44 C C58 DPG . . . D 2 32.728 0.714 5.508 1 393.18 ? C58 DPG 263 A 1 
HETATM 45 C C59 DPG . . . D 2 33.61 1.274 6.641 1 470.11 ? C59 DPG 263 A 1 
HETATM 46 C C60 DPG . . . D 2 31.734 -0.355 6.006 1 425.72 ? C60 DPG 263 A 1 
HETATM 47 O O1 DPG . . . D 2 32.698 1.28 -11.703 1 198.04 ? O1 DPG 263 A 1 
HETATM 48 O O2 DPG . . . D 2 33.299 3.669 -11.012 1 181.25 ? O2 DPG 263 A 1 
HETATM 49 O O3 DPG . . . D 2 35.142 5.239 -12.015 1 206.02 ? O3 DPG 263 A 1 
HETATM 50 O O4 DPG . . . D 2 37.522 5.756 -12.351 1 214.86 ? O4 DPG 263 A 1 
HETATM 51 O O5 DPG . . . D 2 35.991 7.749 -12.161 1 209.82 ? O5 DPG 263 A 1 
HETATM 52 O O6 DPG . . . D 2 35.814 6.145 -14.245 1 269.06 ? O6 DPG 263 A 1 
HETATM 53 O O7 DPG . . . D 2 36.622 7.207 -17.921 1 389.11 ? O7 DPG 263 A 1 
HETATM 54 O O8 DPG . . . D 2 34.278 4.894 -16.201 1 331.18 ? O8 DPG 263 A 1 
HETATM 55 O O9 DPG . . . D 2 34.131 2.341 -16.515 1 341.57 ? O9 DPG 263 A 1 
HETATM 56 O O10 DPG . . . D 2 32.224 3.574 -15.413 1 305.55 ? O10 DPG 263 A 1 
HETATM 57 O O11 DPG . . . D 2 32.625 3.869 -17.816 1 385.52 ? O11 DPG 263 A 1 
HETATM 58 P P1 DPG . . . D 2 36.19 6.326 -12.634 1 222.5 ? P1 DPG 263 A 1 
HETATM 59 P P2 DPG . . . D 2 33.293 3.617 -16.488 1 340.68 ? P2 DPG 263 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           301 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           59 
#