data_2BRD # _model_server_result.job_id wWQTal9QBJO7JQwPy8SkZg _model_server_result.datetime_utc '2024-11-04 18:37:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2brd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":267}' # _entry.id 2BRD # _exptl.entry_id 2BRD _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 887.195 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BRD _cell.length_a 62.45 _cell.length_b 62.45 _cell.length_c 100.9 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BRD _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id L _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 271 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.312 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C46 H96 O11 P2' _chem_comp.formula_weight 887.195 _chem_comp.id DPG _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DPHPG # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DPG sing 70 n n C1 O1 DPG sing 71 n n C1 H11 DPG sing 72 n n C1 H12 DPG sing 73 n n C2 C3 DPG sing 74 n n C2 O2 DPG sing 75 n n C2 H2 DPG sing 76 n n C3 O3 DPG sing 77 n n C3 H31 DPG sing 78 n n C3 H32 DPG sing 79 n n C4 C5 DPG sing 80 n n C4 O6 DPG sing 81 n n C4 H41 DPG sing 82 n n C4 H42 DPG sing 83 n n C5 C6 DPG sing 84 n n C5 O7 DPG sing 85 n n C5 H5 DPG sing 86 n n C6 O8 DPG sing 87 n n C6 H61 DPG sing 88 n n C6 H62 DPG sing 89 n n C11 C12 DPG sing 90 n n C11 O1 DPG sing 91 n n C11 H111 DPG sing 92 n n C11 H112 DPG sing 93 n n C12 C13 DPG sing 94 n n C12 H121 DPG sing 95 n n C12 H122 DPG sing 96 n n C13 C14 DPG sing 97 n n C13 C15 DPG sing 98 n n C13 H13 DPG sing 99 n n C14 H141 DPG sing 100 n n C14 H142 DPG sing 101 n n C14 H143 DPG sing 102 n n C15 C16 DPG sing 103 n n C15 H151 DPG sing 104 n n C15 H152 DPG sing 105 n n C16 C17 DPG sing 106 n n C16 H161 DPG sing 107 n n C16 H162 DPG sing 108 n n C17 C18 DPG sing 109 n n C17 H171 DPG sing 110 n n C17 H172 DPG sing 111 n n C18 C19 DPG sing 112 n n C18 C20 DPG sing 113 n n C18 H18 DPG sing 114 n n C19 H191 DPG sing 115 n n C19 H192 DPG sing 116 n n C19 H193 DPG sing 117 n n C20 C21 DPG sing 118 n n C20 H201 DPG sing 119 n n C20 H202 DPG sing 120 n n C21 C22 DPG sing 121 n n C21 H211 DPG sing 122 n n C21 H212 DPG sing 123 n n C22 C23 DPG sing 124 n n C22 H221 DPG sing 125 n n C22 H222 DPG sing 126 n n C23 C24 DPG sing 127 n n C23 C25 DPG sing 128 n n C23 H23 DPG sing 129 n n C24 H241 DPG sing 130 n n C24 H242 DPG sing 131 n n C24 H243 DPG sing 132 n n C25 C26 DPG sing 133 n n C25 H251 DPG sing 134 n n C25 H252 DPG sing 135 n n C26 C27 DPG sing 136 n n C26 H261 DPG sing 137 n n C26 H262 DPG sing 138 n n C27 C28 DPG sing 139 n n C27 H271 DPG sing 140 n n C27 H272 DPG sing 141 n n C28 C29 DPG sing 142 n n C28 C30 DPG sing 143 n n C28 H28 DPG sing 144 n n C29 H291 DPG sing 145 n n C29 H292 DPG sing 146 n n C29 H293 DPG sing 147 n n C30 H301 DPG sing 148 n n C30 H302 DPG sing 149 n n C30 H303 DPG sing 150 n n C41 C42 DPG sing 151 n n C41 O2 DPG sing 152 n n C41 H411 DPG sing 153 n n C41 H412 DPG sing 154 n n C42 C43 DPG sing 155 n n C42 H421 DPG sing 156 n n C42 H422 DPG sing 157 n n C43 C44 DPG sing 158 n n C43 C45 DPG sing 159 n n C43 H43 DPG sing 160 n n C44 H441 DPG sing 161 n n C44 H442 DPG sing 162 n n C44 H443 DPG sing 163 n n C45 C46 DPG sing 164 n n C45 H451 DPG sing 165 n n C45 H452 DPG sing 166 n n C46 C47 DPG sing 167 n n C46 H461 DPG sing 168 n n C46 H462 DPG sing 169 n n C47 C48 DPG sing 170 n n C47 H471 DPG sing 171 n n C47 H472 DPG sing 172 n n C48 C49 DPG sing 173 n n C48 C50 DPG sing 174 n n C48 H48 DPG sing 175 n n C49 H491 DPG sing 176 n n C49 H492 DPG sing 177 n n C49 H493 DPG sing 178 n n C50 C51 DPG sing 179 n n C50 H501 DPG sing 180 n n C50 H502 DPG sing 181 n n C51 C52 DPG sing 182 n n C51 H511 DPG sing 183 n n C51 H512 DPG sing 184 n n C52 C53 DPG sing 185 n n C52 H521 DPG sing 186 n n C52 H522 DPG sing 187 n n C53 C54 DPG sing 188 n n C53 C55 DPG sing 189 n n C53 H53 DPG sing 190 n n C54 H541 DPG sing 191 n n C54 H542 DPG sing 192 n n C54 H543 DPG sing 193 n n C55 C56 DPG sing 194 n n C55 H551 DPG sing 195 n n C55 H552 DPG sing 196 n n C56 C57 DPG sing 197 n n C56 H561 DPG sing 198 n n C56 H562 DPG sing 199 n n C57 C58 DPG sing 200 n n C57 H571 DPG sing 201 n n C57 H572 DPG sing 202 n n C58 C59 DPG sing 203 n n C58 C60 DPG sing 204 n n C58 H58 DPG sing 205 n n C59 H591 DPG sing 206 n n C59 H592 DPG sing 207 n n C59 H593 DPG sing 208 n n C60 H601 DPG sing 209 n n C60 H602 DPG sing 210 n n C60 H603 DPG sing 211 n n O3 P1 DPG sing 212 n n O4 P1 DPG doub 213 n n O5 P1 DPG sing 214 n n O5 HO5 DPG sing 215 n n O6 P1 DPG sing 216 n n O7 HO7 DPG sing 217 n n O8 P2 DPG sing 218 n n O9 P2 DPG doub 219 n n O10 P2 DPG sing 220 n n O10 HO0 DPG sing 221 n n O11 P2 DPG sing 222 n n O11 HO1 DPG sing 223 n n # _atom_sites.entry_id 2BRD _atom_sites.fract_transf_matrix[1][1] 0.016013 _atom_sites.fract_transf_matrix[1][2] 0.009245 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01849 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DPG A 1 261 261 DPG DPG . C 2 DPG A 1 262 262 DPG DPG . D 2 DPG A 1 263 263 DPG DPG . E 2 DPG A 1 264 264 DPG DPG . F 2 DPG A 1 265 265 DPG DPG . G 2 DPG A 1 266 266 DPG DPG . H 2 DPG A 1 267 267 DPG DPG . I 2 DPG A 1 268 268 DPG DPG . J 2 DPG A 1 269 269 DPG DPG . K 2 DPG A 1 270 270 DPG DPG . L 3 RET A 1 271 216 RET RET . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DPG . . . H 2 30.225 15.323 20.613 1 185.15 ? C1 DPG 267 A 1 HETATM 2 C C2 DPG . . . H 2 30.803 13.96 21.006 1 188.35 ? C2 DPG 267 A 1 HETATM 3 C C3 DPG . . . H 2 32.216 14.103 21.561 1 193.09 ? C3 DPG 267 A 1 HETATM 4 C C4 DPG . . . H 2 30.138 13.488 25.424 1 233.72 ? C4 DPG 267 A 1 HETATM 5 C C5 DPG . . . H 2 29.043 14.29 26.248 1 244.38 ? C5 DPG 267 A 1 HETATM 6 C C6 DPG . . . H 2 29.025 13.766 27.712 1 265.3 ? C6 DPG 267 A 1 HETATM 7 C C11 DPG . . . H 2 28.177 16.207 19.722 1 178.29 ? C11 DPG 267 A 1 HETATM 8 C C12 DPG . . . H 2 28.036 15.525 18.355 1 168.8 ? C12 DPG 267 A 1 HETATM 9 C C13 DPG . . . H 2 28.513 16.408 17.235 1 161.83 ? C13 DPG 267 A 1 HETATM 10 C C14 DPG . . . H 2 29.985 16.162 17.138 1 161.25 ? C14 DPG 267 A 1 HETATM 11 C C15 DPG . . . H 2 27.799 16.038 15.959 1 154.63 ? C15 DPG 267 A 1 HETATM 12 C C16 DPG . . . H 2 28.202 16.787 14.683 1 148.06 ? C16 DPG 267 A 1 HETATM 13 C C17 DPG . . . H 2 27.562 16.381 13.336 1 141.66 ? C17 DPG 267 A 1 HETATM 14 C C18 DPG . . . H 2 28.292 16.66 11.979 1 135.56 ? C18 DPG 267 A 1 HETATM 15 C C19 DPG . . . H 2 29.133 17.935 11.974 1 135.54 ? C19 DPG 267 A 1 HETATM 16 C C20 DPG . . . H 2 27.38 16.694 10.734 1 130.12 ? C20 DPG 267 A 1 HETATM 17 C C21 DPG . . . H 2 28.18 16.196 9.531 1 124.87 ? C21 DPG 267 A 1 HETATM 18 C C22 DPG . . . H 2 27.262 15.695 8.376 1 119.7 ? C22 DPG 267 A 1 HETATM 19 C C23 DPG . . . H 2 27.624 14.43 7.454 1 115.4 ? C23 DPG 267 A 1 HETATM 20 C C24 DPG . . . H 2 26.746 13.255 7.897 1 117.49 ? C24 DPG 267 A 1 HETATM 21 C C25 DPG . . . H 2 27.307 14.652 5.935 1 107.84 ? C25 DPG 267 A 1 HETATM 22 C C26 DPG . . . H 2 27.977 13.736 4.935 1 102.42 ? C26 DPG 267 A 1 HETATM 23 C C27 DPG . . . H 2 27.237 13.915 3.652 1 94.81 ? C27 DPG 267 A 1 HETATM 24 C C28 DPG . . . H 2 27.769 12.927 2.669 1 88.39 ? C28 DPG 267 A 1 HETATM 25 C C29 DPG . . . H 2 26.619 12.333 1.886 1 82.86 ? C29 DPG 267 A 1 HETATM 26 C C30 DPG . . . H 2 28.867 13.49 1.762 1 81.95 ? C30 DPG 267 A 1 HETATM 27 C C41 DPG . . . H 2 31.91 13.234 18.944 1 172.74 ? C41 DPG 267 A 1 HETATM 28 C C42 DPG . . . H 2 31.272 12.96 17.555 1 163.75 ? C42 DPG 267 A 1 HETATM 29 C C43 DPG . . . H 2 31.925 12.071 16.45 1 157.31 ? C43 DPG 267 A 1 HETATM 30 C C44 DPG . . . H 2 31.288 10.648 16.612 1 158.22 ? C44 DPG 267 A 1 HETATM 31 C C45 DPG . . . H 2 31.846 12.738 15.011 1 149.7 ? C45 DPG 267 A 1 HETATM 32 C C46 DPG . . . H 2 31.659 11.926 13.67 1 143.21 ? C46 DPG 267 A 1 HETATM 33 C C47 DPG . . . H 2 32.444 12.362 12.403 1 137.44 ? C47 DPG 267 A 1 HETATM 34 C C48 DPG . . . H 2 31.821 12.429 10.994 1 131.25 ? C48 DPG 267 A 1 HETATM 35 C C49 DPG . . . H 2 30.44 13.121 11.018 1 131.36 ? C49 DPG 267 A 1 HETATM 36 C C50 DPG . . . H 2 31.726 11.013 10.418 1 128.75 ? C50 DPG 267 A 1 HETATM 37 C C51 DPG . . . H 2 31.513 10.999 8.901 1 122.07 ? C51 DPG 267 A 1 HETATM 38 C C52 DPG . . . H 2 31.042 9.663 8.334 1 119.5 ? C52 DPG 267 A 1 HETATM 39 C C53 DPG . . . H 2 30.029 9.673 7.11 1 113.75 ? C53 DPG 267 A 1 HETATM 40 C C54 DPG . . . H 2 29.307 11.033 6.746 1 111.96 ? C54 DPG 267 A 1 HETATM 41 C C55 DPG . . . H 2 30.693 8.99 5.861 1 107.45 ? C55 DPG 267 A 1 HETATM 42 C C56 DPG . . . H 2 30.114 9.313 4.47 1 99.75 ? C56 DPG 267 A 1 HETATM 43 C C57 DPG . . . H 2 30.121 8.205 3.423 1 93.36 ? C57 DPG 267 A 1 HETATM 44 C C58 DPG . . . H 2 30.1 8.888 2.045 1 84.01 ? C58 DPG 267 A 1 HETATM 45 C C59 DPG . . . H 2 28.72 9.428 1.626 1 80.93 ? C59 DPG 267 A 1 HETATM 46 C C60 DPG . . . H 2 30.805 8.124 0.904 1 75.34 ? C60 DPG 267 A 1 HETATM 47 O O1 DPG . . . H 2 28.774 15.254 20.648 1 185.43 ? O1 DPG 267 A 1 HETATM 48 O O2 DPG . . . H 2 30.825 13.09 19.883 1 179.49 ? O2 DPG 267 A 1 HETATM 49 O O3 DPG . . . H 2 32.225 15.172 22.528 1 201.95 ? O3 DPG 267 A 1 HETATM 50 O O4 DPG . . . H 2 32.291 16.126 24.788 1 226.01 ? O4 DPG 267 A 1 HETATM 51 O O5 DPG . . . H 2 33.317 13.836 24.555 1 223.3 ? O5 DPG 267 A 1 HETATM 52 O O6 DPG . . . H 2 30.72 14.155 24.243 1 219.75 ? O6 DPG 267 A 1 HETATM 53 O O7 DPG . . . H 2 27.682 14.216 25.724 1 237.51 ? O7 DPG 267 A 1 HETATM 54 O O8 DPG . . . H 2 28.404 12.46 27.781 1 266.35 ? O8 DPG 267 A 1 HETATM 55 O O9 DPG . . . H 2 27.481 12.048 30.151 1 306.35 ? O9 DPG 267 A 1 HETATM 56 O O10 DPG . . . H 2 26.103 13.349 28.484 1 277.42 ? O10 DPG 267 A 1 HETATM 57 O O11 DPG . . . H 2 26.424 10.936 28.165 1 272.31 ? O11 DPG 267 A 1 HETATM 58 P P1 DPG . . . H 2 32.246 14.81 24.118 1 218.35 ? P1 DPG 267 A 1 HETATM 59 P P2 DPG . . . H 2 27.067 12.196 28.69 1 280.78 ? P2 DPG 267 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 59 #