data_2BRD
#
_model_server_result.job_id            3DN_l6ISXXpOELdfqzoEdQ 
_model_server_result.datetime_utc      '2024-12-01 01:19:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2brd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":270}' 
#
_entry.id    2BRD 
#
_exptl.entry_id    2BRD 
_exptl.method      'ELECTRON CRYSTALLOGRAPHY' 
#
_entity.details                     ? 
_entity.formula_weight              887.195 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2BRD 
_cell.length_a            62.45 
_cell.length_b            62.45 
_cell.length_c            100.9 
_cell.Z_PDB               3 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BRD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        143 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 3' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             216 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              216 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            L 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              271 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.312 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C46 H96 O11 P2' 
_chem_comp.formula_weight    887.195 
_chem_comp.id                DPG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DPHPG 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 DPG sing 70 n n 
C1 O1 DPG sing 71 n n 
C1 H11 DPG sing 72 n n 
C1 H12 DPG sing 73 n n 
C2 C3 DPG sing 74 n n 
C2 O2 DPG sing 75 n n 
C2 H2 DPG sing 76 n n 
C3 O3 DPG sing 77 n n 
C3 H31 DPG sing 78 n n 
C3 H32 DPG sing 79 n n 
C4 C5 DPG sing 80 n n 
C4 O6 DPG sing 81 n n 
C4 H41 DPG sing 82 n n 
C4 H42 DPG sing 83 n n 
C5 C6 DPG sing 84 n n 
C5 O7 DPG sing 85 n n 
C5 H5 DPG sing 86 n n 
C6 O8 DPG sing 87 n n 
C6 H61 DPG sing 88 n n 
C6 H62 DPG sing 89 n n 
C11 C12 DPG sing 90 n n 
C11 O1 DPG sing 91 n n 
C11 H111 DPG sing 92 n n 
C11 H112 DPG sing 93 n n 
C12 C13 DPG sing 94 n n 
C12 H121 DPG sing 95 n n 
C12 H122 DPG sing 96 n n 
C13 C14 DPG sing 97 n n 
C13 C15 DPG sing 98 n n 
C13 H13 DPG sing 99 n n 
C14 H141 DPG sing 100 n n 
C14 H142 DPG sing 101 n n 
C14 H143 DPG sing 102 n n 
C15 C16 DPG sing 103 n n 
C15 H151 DPG sing 104 n n 
C15 H152 DPG sing 105 n n 
C16 C17 DPG sing 106 n n 
C16 H161 DPG sing 107 n n 
C16 H162 DPG sing 108 n n 
C17 C18 DPG sing 109 n n 
C17 H171 DPG sing 110 n n 
C17 H172 DPG sing 111 n n 
C18 C19 DPG sing 112 n n 
C18 C20 DPG sing 113 n n 
C18 H18 DPG sing 114 n n 
C19 H191 DPG sing 115 n n 
C19 H192 DPG sing 116 n n 
C19 H193 DPG sing 117 n n 
C20 C21 DPG sing 118 n n 
C20 H201 DPG sing 119 n n 
C20 H202 DPG sing 120 n n 
C21 C22 DPG sing 121 n n 
C21 H211 DPG sing 122 n n 
C21 H212 DPG sing 123 n n 
C22 C23 DPG sing 124 n n 
C22 H221 DPG sing 125 n n 
C22 H222 DPG sing 126 n n 
C23 C24 DPG sing 127 n n 
C23 C25 DPG sing 128 n n 
C23 H23 DPG sing 129 n n 
C24 H241 DPG sing 130 n n 
C24 H242 DPG sing 131 n n 
C24 H243 DPG sing 132 n n 
C25 C26 DPG sing 133 n n 
C25 H251 DPG sing 134 n n 
C25 H252 DPG sing 135 n n 
C26 C27 DPG sing 136 n n 
C26 H261 DPG sing 137 n n 
C26 H262 DPG sing 138 n n 
C27 C28 DPG sing 139 n n 
C27 H271 DPG sing 140 n n 
C27 H272 DPG sing 141 n n 
C28 C29 DPG sing 142 n n 
C28 C30 DPG sing 143 n n 
C28 H28 DPG sing 144 n n 
C29 H291 DPG sing 145 n n 
C29 H292 DPG sing 146 n n 
C29 H293 DPG sing 147 n n 
C30 H301 DPG sing 148 n n 
C30 H302 DPG sing 149 n n 
C30 H303 DPG sing 150 n n 
C41 C42 DPG sing 151 n n 
C41 O2 DPG sing 152 n n 
C41 H411 DPG sing 153 n n 
C41 H412 DPG sing 154 n n 
C42 C43 DPG sing 155 n n 
C42 H421 DPG sing 156 n n 
C42 H422 DPG sing 157 n n 
C43 C44 DPG sing 158 n n 
C43 C45 DPG sing 159 n n 
C43 H43 DPG sing 160 n n 
C44 H441 DPG sing 161 n n 
C44 H442 DPG sing 162 n n 
C44 H443 DPG sing 163 n n 
C45 C46 DPG sing 164 n n 
C45 H451 DPG sing 165 n n 
C45 H452 DPG sing 166 n n 
C46 C47 DPG sing 167 n n 
C46 H461 DPG sing 168 n n 
C46 H462 DPG sing 169 n n 
C47 C48 DPG sing 170 n n 
C47 H471 DPG sing 171 n n 
C47 H472 DPG sing 172 n n 
C48 C49 DPG sing 173 n n 
C48 C50 DPG sing 174 n n 
C48 H48 DPG sing 175 n n 
C49 H491 DPG sing 176 n n 
C49 H492 DPG sing 177 n n 
C49 H493 DPG sing 178 n n 
C50 C51 DPG sing 179 n n 
C50 H501 DPG sing 180 n n 
C50 H502 DPG sing 181 n n 
C51 C52 DPG sing 182 n n 
C51 H511 DPG sing 183 n n 
C51 H512 DPG sing 184 n n 
C52 C53 DPG sing 185 n n 
C52 H521 DPG sing 186 n n 
C52 H522 DPG sing 187 n n 
C53 C54 DPG sing 188 n n 
C53 C55 DPG sing 189 n n 
C53 H53 DPG sing 190 n n 
C54 H541 DPG sing 191 n n 
C54 H542 DPG sing 192 n n 
C54 H543 DPG sing 193 n n 
C55 C56 DPG sing 194 n n 
C55 H551 DPG sing 195 n n 
C55 H552 DPG sing 196 n n 
C56 C57 DPG sing 197 n n 
C56 H561 DPG sing 198 n n 
C56 H562 DPG sing 199 n n 
C57 C58 DPG sing 200 n n 
C57 H571 DPG sing 201 n n 
C57 H572 DPG sing 202 n n 
C58 C59 DPG sing 203 n n 
C58 C60 DPG sing 204 n n 
C58 H58 DPG sing 205 n n 
C59 H591 DPG sing 206 n n 
C59 H592 DPG sing 207 n n 
C59 H593 DPG sing 208 n n 
C60 H601 DPG sing 209 n n 
C60 H602 DPG sing 210 n n 
C60 H603 DPG sing 211 n n 
O3 P1 DPG sing 212 n n 
O4 P1 DPG doub 213 n n 
O5 P1 DPG sing 214 n n 
O5 HO5 DPG sing 215 n n 
O6 P1 DPG sing 216 n n 
O7 HO7 DPG sing 217 n n 
O8 P2 DPG sing 218 n n 
O9 P2 DPG doub 219 n n 
O10 P2 DPG sing 220 n n 
O10 HO0 DPG sing 221 n n 
O11 P2 DPG sing 222 n n 
O11 HO1 DPG sing 223 n n 
#
_atom_sites.entry_id                     2BRD 
_atom_sites.fract_transf_matrix[1][1]    0.016013 
_atom_sites.fract_transf_matrix[1][2]    0.009245 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009911 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DPG A 1 261 261 DPG DPG . 
C 2 DPG A 1 262 262 DPG DPG . 
D 2 DPG A 1 263 263 DPG DPG . 
E 2 DPG A 1 264 264 DPG DPG . 
F 2 DPG A 1 265 265 DPG DPG . 
G 2 DPG A 1 266 266 DPG DPG . 
H 2 DPG A 1 267 267 DPG DPG . 
I 2 DPG A 1 268 268 DPG DPG . 
J 2 DPG A 1 269 269 DPG DPG . 
K 2 DPG A 1 270 270 DPG DPG . 
L 3 RET A 1 271 216 RET RET . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DPG . . . K 2 31.142 -26.374 24.654 1 207.46 ? C1 DPG 270 A 1 
HETATM 2 C C2 DPG . . . K 2 31.778 -25.075 24.139 1 193.51 ? C2 DPG 270 A 1 
HETATM 3 C C3 DPG . . . K 2 33.159 -24.871 24.752 1 210.28 ? C3 DPG 270 A 1 
HETATM 4 C C4 DPG . . . K 2 37.741 -25.882 22.431 1 156.74 ? C4 DPG 270 A 1 
HETATM 5 C C5 DPG . . . K 2 38.875 -26.383 23.424 1 176.41 ? C5 DPG 270 A 1 
HETATM 6 C C6 DPG . . . K 2 40.25 -26.33 22.698 1 161.59 ? C6 DPG 270 A 1 
HETATM 7 C C11 DPG . . . K 2 28.908 -27.241 24.272 1 196.98 ? C11 DPG 270 A 1 
HETATM 8 C C12 DPG . . . K 2 28.045 -26.007 24.548 1 204.48 ? C12 DPG 270 A 1 
HETATM 9 C C13 DPG . . . K 2 26.656 -26.138 23.969 1 189.21 ? C13 DPG 270 A 1 
HETATM 10 C C14 DPG . . . K 2 25.842 -26.76 25.061 1 219.51 ? C14 DPG 270 A 1 
HETATM 11 C C15 DPG . . . K 2 26.1 -24.8 23.568 1 179.65 ? C15 DPG 270 A 1 
HETATM 12 C C16 DPG . . . K 2 25.296 -24.686 22.256 1 153.73 ? C16 DPG 270 A 1 
HETATM 13 C C17 DPG . . . K 2 24.723 -23.317 21.832 1 146.99 ? C17 DPG 270 A 1 
HETATM 14 C C18 DPG . . . K 2 24.838 -22.75 20.376 1 129.16 ? C18 DPG 270 A 1 
HETATM 15 C C19 DPG . . . K 2 24.733 -21.225 20.333 1 128.75 ? C19 DPG 270 A 1 
HETATM 16 C C20 DPG . . . K 2 23.861 -23.348 19.345 1 120.93 ? C20 DPG 270 A 1 
HETATM 17 C C21 DPG . . . K 2 24.434 -23.137 17.947 1 114.54 ? C21 DPG 270 A 1 
HETATM 18 C C22 DPG . . . K 2 23.343 -23.136 16.839 1 112.57 ? C22 DPG 270 A 1 
HETATM 19 C C23 DPG . . . K 2 23.349 -22.203 15.537 1 112.79 ? C23 DPG 270 A 1 
HETATM 20 C C24 DPG . . . K 2 23.944 -20.833 15.902 1 112.51 ? C24 DPG 270 A 1 
HETATM 21 C C25 DPG . . . K 2 24.259 -22.747 14.379 1 114.45 ? C25 DPG 270 A 1 
HETATM 22 C C26 DPG . . . K 2 23.972 -22.361 12.946 1 117.25 ? C26 DPG 270 A 1 
HETATM 23 C C27 DPG . . . K 2 25.289 -22.216 12.26 1 118.5 ? C27 DPG 270 A 1 
HETATM 24 C C28 DPG . . . K 2 25.154 -21.337 11.065 1 119.92 ? C28 DPG 270 A 1 
HETATM 25 C C29 DPG . . . K 2 26.345 -21.568 10.156 1 119.93 ? C29 DPG 270 A 1 
HETATM 26 C C30 DPG . . . K 2 24.981 -19.852 11.409 1 119.64 ? C30 DPG 270 A 1 
HETATM 27 C C41 DPG . . . K 2 30.785 -22.974 23.455 1 177.1 ? C41 DPG 270 A 1 
HETATM 28 C C42 DPG . . . K 2 29.501 -22.21 23.883 1 187.1 ? C42 DPG 270 A 1 
HETATM 29 C C43 DPG . . . K 2 29.253 -20.716 23.52 1 178.56 ? C43 DPG 270 A 1 
HETATM 30 C C44 DPG . . . K 2 30.292 -19.888 24.352 1 199.11 ? C44 DPG 270 A 1 
HETATM 31 C C45 DPG . . . K 2 29.234 -20.468 21.952 1 148.82 ? C45 DPG 270 A 1 
HETATM 32 C C46 DPG . . . K 2 28.427 -19.275 21.305 1 139.61 ? C46 DPG 270 A 1 
HETATM 33 C C47 DPG . . . K 2 27.908 -19.46 19.846 1 124.52 ? C47 DPG 270 A 1 
HETATM 34 C C48 DPG . . . K 2 27.72 -18.212 18.949 1 118.61 ? C48 DPG 270 A 1 
HETATM 35 C C49 DPG . . . K 2 26.542 -17.346 19.446 1 121.6 ? C49 DPG 270 A 1 
HETATM 36 C C50 DPG . . . K 2 27.488 -18.667 17.508 1 113.48 ? C50 DPG 270 A 1 
HETATM 37 C C51 DPG . . . K 2 28.015 -17.7 16.442 1 112.39 ? C51 DPG 270 A 1 
HETATM 38 C C52 DPG . . . K 2 27.368 -17.881 15.07 1 113.34 ? C52 DPG 270 A 1 
HETATM 39 C C53 DPG . . . K 2 28.3 -17.676 13.791 1 115.57 ? C53 DPG 270 A 1 
HETATM 40 C C54 DPG . . . K 2 29.339 -18.825 13.468 1 116.21 ? C54 DPG 270 A 1 
HETATM 41 C C55 DPG . . . K 2 27.425 -17.264 12.561 1 117.97 ? C55 DPG 270 A 1 
HETATM 42 C C56 DPG . . . K 2 27.843 -17.702 11.142 1 119.87 ? C56 DPG 270 A 1 
HETATM 43 C C57 DPG . . . K 2 27.49 -16.769 9.991 1 119.8 ? C57 DPG 270 A 1 
HETATM 44 C C58 DPG . . . K 2 27.231 -17.639 8.748 1 117.19 ? C58 DPG 270 A 1 
HETATM 45 C C59 DPG . . . K 2 26.276 -16.979 7.735 1 112.49 ? C59 DPG 270 A 1 
HETATM 46 C C60 DPG . . . K 2 28.465 -18.27 8.076 1 114.37 ? C60 DPG 270 A 1 
HETATM 47 O O1 DPG . . . K 2 30.172 -26.837 23.681 1 182.27 ? O1 DPG 270 A 1 
HETATM 48 O O2 DPG . . . K 2 30.957 -23.964 24.492 1 202.92 ? O2 DPG 270 A 1 
HETATM 49 O O3 DPG . . . K 2 34.152 -24.91 23.708 1 182.9 ? O3 DPG 270 A 1 
HETATM 50 O O4 DPG . . . K 2 34.752 -27.12 22.828 1 164.06 ? O4 DPG 270 A 1 
HETATM 51 O O5 DPG . . . K 2 35.638 -26.594 25.134 1 221.77 ? O5 DPG 270 A 1 
HETATM 52 O O6 DPG . . . K 2 36.535 -25.28 23.033 1 168.12 ? O6 DPG 270 A 1 
HETATM 53 O O7 DPG . . . K 2 38.701 -27.732 23.955 1 188.87 ? O7 DPG 270 A 1 
HETATM 54 O O8 DPG . . . K 2 41.332 -26.308 23.66 1 181.78 ? O8 DPG 270 A 1 
HETATM 55 O O9 DPG . . . K 2 41.714 -28.851 23.771 1 184.39 ? O9 DPG 270 A 1 
HETATM 56 O O10 DPG . . . K 2 42.907 -27.338 25.405 1 230.41 ? O10 DPG 270 A 1 
HETATM 57 O O11 DPG . . . K 2 40.486 -27.669 25.613 1 237.34 ? O11 DPG 270 A 1 
HETATM 58 P P1 DPG . . . K 2 35.274 -26.097 23.754 1 183.99 ? P1 DPG 270 A 1 
HETATM 59 P P2 DPG . . . K 2 41.628 -27.594 24.631 1 206.81 ? P2 DPG 270 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           59 
#