data_2BRI # _model_server_result.job_id wnHTU7wU5niKug272SOajQ _model_server_result.datetime_utc '2024-10-18 21:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bri # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1226}' # _entry.id 2BRI # _exptl.entry_id 2BRI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BRI _cell.length_a 146.684 _cell.length_b 146.684 _cell.length_c 146.684 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BRI _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x,-y+1 0 0 -1 1 0 0 0 -1 0 146.684 0 146.684 3 'crystal symmetry operation' 11_566 y,-z+1,-x+1 0 1 0 0 0 -1 -1 0 0 0 146.684 146.684 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N ARG 2 A ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C ALA 77 A ALA 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 78 A MSE 78 1_555 A N LEU 79 A LEU 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C VAL 110 A VAL 110 1_555 A N MSE 111 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 A C MSE 111 A MSE 111 1_555 A N GLY 112 A GLY 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C LYS 161 A LYS 161 1_555 A N MSE 162 A MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C MSE 162 A MSE 162 1_555 A N LYS 163 A LYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 D MG MG . A MG 1227 1_555 A OD2 ASP 121 A ASP 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.956 ? metalc ? metalc2 D MG MG . A MG 1227 1_555 C O1B ANP . A ANP 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc3 D MG MG . A MG 1227 1_555 A OD1 ASP 121 A ASP 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? covale ? covale8 B C MSE 1 B MSE 1 1_555 B N ARG 2 B ARG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C ALA 77 B ALA 77 1_555 B N MSE 78 B MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 78 B MSE 78 1_555 B N LEU 79 B LEU 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale11 B C VAL 110 B VAL 110 1_555 B N MSE 111 B MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 111 B MSE 111 1_555 B N GLY 112 B GLY 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C LYS 161 B LYS 161 1_555 B N MSE 162 B MSE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 B C MSE 162 B MSE 162 1_555 B N LYS 163 B LYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc4 F MG MG . B MG 1227 1_555 E O2A ANP . B ANP 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc5 F MG MG . B MG 1227 1_555 B O SER 182 B SER 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc6 F MG MG . B MG 1227 1_555 B OD2 ASP 121 B ASP 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc7 F MG MG . B MG 1227 1_555 E O1B ANP . B ANP 1226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BRI _atom_sites.fract_transf_matrix[1][1] 0.006817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 1226 1226 ANP ANP . D 3 MG A 1 1227 1227 MG MG . E 2 ANP B 1 1226 1226 ANP ANP . F 3 MG B 1 1227 1227 MG MG . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 83.598 123.083 46.34 0.6 70.15 ? PG ANP 1226 B 1 HETATM 2 O O1G ANP . . . E 2 85.065 122.921 46.308 0.6 70.13 ? O1G ANP 1226 B 1 HETATM 3 O O2G ANP . . . E 2 82.899 123.02 47.667 0.6 71 ? O2G ANP 1226 B 1 HETATM 4 O O3G ANP . . . E 2 82.934 122.021 45.374 0.6 71.32 ? O3G ANP 1226 B 1 HETATM 5 P PB ANP . . . E 2 83.253 126.007 46.563 0.6 72.95 ? PB ANP 1226 B 1 HETATM 6 O O1B ANP . . . E 2 84.274 125.874 47.629 0.6 72.39 ? O1B ANP 1226 B 1 HETATM 7 O O2B ANP . . . E 2 83.501 126.935 45.475 0.6 72.25 ? O2B ANP 1226 B 1 HETATM 8 N N3B ANP . . . E 2 83.016 124.585 46.012 0.6 71.84 ? N3B ANP 1226 B 1 HETATM 9 P PA ANP . . . E 2 81.651 127.17 48.712 0.8 73.41 ? PA ANP 1226 B 1 HETATM 10 O O1A ANP . . . E 2 80.164 126.96 48.766 0.8 73.38 ? O1A ANP 1226 B 1 HETATM 11 O O2A ANP . . . E 2 82.174 126.412 49.84 0.8 73.24 ? O2A ANP 1226 B 1 HETATM 12 O O3A ANP . . . E 2 81.959 126.675 47.214 0.8 73.8 ? O3A ANP 1226 B 1 HETATM 13 O O5' ANP . . . E 2 82.031 128.752 48.844 1 73.97 ? O5' ANP 1226 B 1 HETATM 14 C C5' ANP . . . E 2 81.337 129.927 48.981 1 73.52 ? C5' ANP 1226 B 1 HETATM 15 C C4' ANP . . . E 2 80.248 130.257 49.676 1 73.16 ? C4' ANP 1226 B 1 HETATM 16 O O4' ANP . . . E 2 80.914 130.847 50.703 1 71.14 ? O4' ANP 1226 B 1 HETATM 17 C C3' ANP . . . E 2 79.311 131.367 49.108 1 73.1 ? C3' ANP 1226 B 1 HETATM 18 O O3' ANP . . . E 2 78.43 131.138 48.071 1 75.01 ? O3' ANP 1226 B 1 HETATM 19 C C2' ANP . . . E 2 78.817 131.912 50.536 1 72.36 ? C2' ANP 1226 B 1 HETATM 20 O O2' ANP . . . E 2 77.487 131.18 50.83 1 75.1 ? O2' ANP 1226 B 1 HETATM 21 C C1' ANP . . . E 2 79.928 131.53 51.52 1 70.26 ? C1' ANP 1226 B 1 HETATM 22 N N9 ANP . . . E 2 80.53 132.615 52.315 1 67.47 ? N9 ANP 1226 B 1 HETATM 23 C C8 ANP . . . E 2 80.561 132.878 53.617 1 66.12 ? C8 ANP 1226 B 1 HETATM 24 N N7 ANP . . . E 2 81.166 133.9 54.074 1 65.45 ? N7 ANP 1226 B 1 HETATM 25 C C5 ANP . . . E 2 81.617 134.406 52.947 1 64.63 ? C5 ANP 1226 B 1 HETATM 26 C C6 ANP . . . E 2 82.401 135.587 52.737 1 63.63 ? C6 ANP 1226 B 1 HETATM 27 N N6 ANP . . . E 2 82.736 136.273 53.823 1 63.75 ? N6 ANP 1226 B 1 HETATM 28 N N1 ANP . . . E 2 82.769 135.943 51.445 1 63.71 ? N1 ANP 1226 B 1 HETATM 29 C C2 ANP . . . E 2 82.412 135.209 50.309 1 63.94 ? C2 ANP 1226 B 1 HETATM 30 N N3 ANP . . . E 2 81.639 134.037 50.471 1 64.51 ? N3 ANP 1226 B 1 HETATM 31 C C4 ANP . . . E 2 81.302 133.73 51.774 1 65.08 ? C4 ANP 1226 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #