data_2BRM # _model_server_result.job_id 64CdEEAejFyh81IjTV0KZA _model_server_result.datetime_utc '2024-11-09 02:06:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2brm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1275}' # _entry.id 2BRM # _exptl.entry_id 2BRM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.383 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-AMINO-3-BENZYL-[4.3.0]BICYCLO-1,6-DIAZANONAN-2-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.38 _cell.angle_gamma 90 _cell.entry_id 2BRM _cell.length_a 45.116 _cell.length_b 65.909 _cell.length_c 54.582 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BRM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H18 N4 O' _chem_comp.formula_weight 330.383 _chem_comp.id DFZ _chem_comp.mon_nstd_flag . _chem_comp.name 3-AMINO-3-BENZYL-[4.3.0]BICYCLO-1,6-DIAZANONAN-2-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 N1 DFZ doub 83 n y C2 N3 DFZ sing 84 n y C2 H2 DFZ sing 85 n n C10 C11 DFZ sing 86 n y C10 N90 DFZ sing 87 n y C10 C1 DFZ doub 88 n y C11 C12 DFZ doub 89 n y C11 C16 DFZ sing 90 n y C12 C13 DFZ sing 91 n y C12 H12 DFZ sing 92 n n C13 C14 DFZ doub 93 n y C13 H13 DFZ sing 94 n n C14 C15 DFZ sing 95 n y C14 H14 DFZ sing 96 n n C15 C16 DFZ doub 97 n y C15 H15 DFZ sing 98 n n C16 H16 DFZ sing 99 n n C19 C20 DFZ doub 100 n y C19 C18 DFZ sing 101 n y C19 H19 DFZ sing 102 n n C20 C21 DFZ sing 103 n y C20 H20 DFZ sing 104 n n C21 C22 DFZ doub 105 n y C21 H21 DFZ sing 106 n n C22 C17 DFZ sing 107 n y C22 H22 DFZ sing 108 n n N1 C6 DFZ sing 109 n y C6 C5 DFZ doub 110 n y C6 N90 DFZ sing 111 n y C5 C4 DFZ sing 112 n y C5 C1 DFZ sing 113 n y N9 C4 DFZ sing 114 n n N9 C8 DFZ sing 115 n n N9 H9 DFZ sing 116 n n C4 N3 DFZ doub 117 n y N90 H90 DFZ sing 118 n n C17 C18 DFZ doub 119 n y C17 H17 DFZ sing 120 n n C1 C18 DFZ sing 121 n y C23 C8 DFZ sing 122 n n C23 O24 DFZ sing 123 n n C23 H231 DFZ sing 124 n n C23 H232 DFZ sing 125 n n C8 H8C1 DFZ sing 126 n n C8 H8C2 DFZ sing 127 n n O24 H24 DFZ sing 128 n n # _atom_sites.entry_id 2BRM _atom_sites.fract_transf_matrix[1][1] 0.022165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004461 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015172 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DFZ A 1 1275 1275 DFZ DFZ . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . C 3 HOH A 31 2031 2031 HOH HOH . C 3 HOH A 32 2032 2032 HOH HOH . C 3 HOH A 33 2033 2033 HOH HOH . C 3 HOH A 34 2034 2034 HOH HOH . C 3 HOH A 35 2035 2035 HOH HOH . C 3 HOH A 36 2036 2036 HOH HOH . C 3 HOH A 37 2037 2037 HOH HOH . C 3 HOH A 38 2038 2038 HOH HOH . C 3 HOH A 39 2039 2039 HOH HOH . C 3 HOH A 40 2040 2040 HOH HOH . C 3 HOH A 41 2041 2041 HOH HOH . C 3 HOH A 42 2042 2042 HOH HOH . C 3 HOH A 43 2043 2043 HOH HOH . C 3 HOH A 44 2044 2044 HOH HOH . C 3 HOH A 45 2045 2045 HOH HOH . C 3 HOH A 46 2046 2046 HOH HOH . C 3 HOH A 47 2047 2047 HOH HOH . C 3 HOH A 48 2048 2048 HOH HOH . C 3 HOH A 49 2049 2049 HOH HOH . C 3 HOH A 50 2050 2050 HOH HOH . C 3 HOH A 51 2051 2051 HOH HOH . C 3 HOH A 52 2052 2052 HOH HOH . C 3 HOH A 53 2053 2053 HOH HOH . C 3 HOH A 54 2054 2054 HOH HOH . C 3 HOH A 55 2055 2055 HOH HOH . C 3 HOH A 56 2056 2056 HOH HOH . C 3 HOH A 57 2057 2057 HOH HOH . C 3 HOH A 58 2058 2058 HOH HOH . C 3 HOH A 59 2059 2059 HOH HOH . C 3 HOH A 60 2060 2060 HOH HOH . C 3 HOH A 61 2061 2061 HOH HOH . C 3 HOH A 62 2062 2062 HOH HOH . C 3 HOH A 63 2063 2063 HOH HOH . C 3 HOH A 64 2064 2064 HOH HOH . C 3 HOH A 65 2065 2065 HOH HOH . C 3 HOH A 66 2066 2066 HOH HOH . C 3 HOH A 67 2067 2067 HOH HOH . C 3 HOH A 68 2068 2068 HOH HOH . C 3 HOH A 69 2069 2069 HOH HOH . C 3 HOH A 70 2070 2070 HOH HOH . C 3 HOH A 71 2071 2071 HOH HOH . C 3 HOH A 72 2072 2072 HOH HOH . C 3 HOH A 73 2073 2073 HOH HOH . C 3 HOH A 74 2074 2074 HOH HOH . C 3 HOH A 75 2075 2075 HOH HOH . C 3 HOH A 76 2076 2076 HOH HOH . C 3 HOH A 77 2077 2077 HOH HOH . C 3 HOH A 78 2078 2078 HOH HOH . C 3 HOH A 79 2079 2079 HOH HOH . C 3 HOH A 80 2080 2080 HOH HOH . C 3 HOH A 81 2081 2081 HOH HOH . C 3 HOH A 82 2082 2082 HOH HOH . C 3 HOH A 83 2083 2083 HOH HOH . C 3 HOH A 84 2084 2084 HOH HOH . C 3 HOH A 85 2085 2085 HOH HOH . C 3 HOH A 86 2086 2086 HOH HOH . C 3 HOH A 87 2087 2087 HOH HOH . C 3 HOH A 88 2088 2088 HOH HOH . C 3 HOH A 89 2089 2089 HOH HOH . C 3 HOH A 90 2090 2090 HOH HOH . C 3 HOH A 91 2091 2091 HOH HOH . C 3 HOH A 92 2092 2092 HOH HOH . C 3 HOH A 93 2093 2093 HOH HOH . C 3 HOH A 94 2094 2094 HOH HOH . C 3 HOH A 95 2095 2095 HOH HOH . C 3 HOH A 96 2096 2096 HOH HOH . C 3 HOH A 97 2097 2097 HOH HOH . C 3 HOH A 98 2098 2098 HOH HOH . C 3 HOH A 99 2099 2099 HOH HOH . C 3 HOH A 100 2100 2100 HOH HOH . C 3 HOH A 101 2101 2101 HOH HOH . C 3 HOH A 102 2102 2102 HOH HOH . C 3 HOH A 103 2103 2103 HOH HOH . C 3 HOH A 104 2104 2104 HOH HOH . C 3 HOH A 105 2105 2105 HOH HOH . C 3 HOH A 106 2106 2106 HOH HOH . C 3 HOH A 107 2107 2107 HOH HOH . C 3 HOH A 108 2108 2108 HOH HOH . C 3 HOH A 109 2109 2109 HOH HOH . C 3 HOH A 110 2110 2110 HOH HOH . C 3 HOH A 111 2111 2111 HOH HOH . C 3 HOH A 112 2112 2112 HOH HOH . C 3 HOH A 113 2113 2113 HOH HOH . C 3 HOH A 114 2114 2114 HOH HOH . C 3 HOH A 115 2115 2115 HOH HOH . C 3 HOH A 116 2116 2116 HOH HOH . C 3 HOH A 117 2117 2117 HOH HOH . C 3 HOH A 118 2118 2118 HOH HOH . C 3 HOH A 119 2119 2119 HOH HOH . C 3 HOH A 120 2120 2120 HOH HOH . C 3 HOH A 121 2121 2121 HOH HOH . C 3 HOH A 122 2122 2122 HOH HOH . C 3 HOH A 123 2123 2123 HOH HOH . C 3 HOH A 124 2124 2124 HOH HOH . C 3 HOH A 125 2125 2125 HOH HOH . C 3 HOH A 126 2126 2126 HOH HOH . C 3 HOH A 127 2127 2127 HOH HOH . C 3 HOH A 128 2128 2128 HOH HOH . C 3 HOH A 129 2129 2129 HOH HOH . C 3 HOH A 130 2130 2130 HOH HOH . C 3 HOH A 131 2131 2131 HOH HOH . C 3 HOH A 132 2132 2132 HOH HOH . C 3 HOH A 133 2133 2133 HOH HOH . C 3 HOH A 134 2134 2134 HOH HOH . C 3 HOH A 135 2135 2135 HOH HOH . C 3 HOH A 136 2136 2136 HOH HOH . C 3 HOH A 137 2137 2137 HOH HOH . C 3 HOH A 138 2138 2138 HOH HOH . C 3 HOH A 139 2139 2139 HOH HOH . C 3 HOH A 140 2140 2140 HOH HOH . C 3 HOH A 141 2141 2141 HOH HOH . C 3 HOH A 142 2142 2142 HOH HOH . C 3 HOH A 143 2143 2143 HOH HOH . C 3 HOH A 144 2144 2144 HOH HOH . C 3 HOH A 145 2145 2145 HOH HOH . C 3 HOH A 146 2146 2146 HOH HOH . C 3 HOH A 147 2147 2147 HOH HOH . C 3 HOH A 148 2148 2148 HOH HOH . C 3 HOH A 149 2149 2149 HOH HOH . C 3 HOH A 150 2150 2150 HOH HOH . C 3 HOH A 151 2151 2151 HOH HOH . C 3 HOH A 152 2152 2152 HOH HOH . C 3 HOH A 153 2153 2153 HOH HOH . C 3 HOH A 154 2154 2154 HOH HOH . C 3 HOH A 155 2155 2155 HOH HOH . C 3 HOH A 156 2156 2156 HOH HOH . C 3 HOH A 157 2157 2157 HOH HOH . C 3 HOH A 158 2158 2158 HOH HOH . C 3 HOH A 159 2159 2159 HOH HOH . C 3 HOH A 160 2160 2160 HOH HOH . C 3 HOH A 161 2161 2161 HOH HOH . C 3 HOH A 162 2162 2162 HOH HOH . C 3 HOH A 163 2163 2163 HOH HOH . C 3 HOH A 164 2164 2164 HOH HOH . C 3 HOH A 165 2165 2165 HOH HOH . C 3 HOH A 166 2166 2166 HOH HOH . C 3 HOH A 167 2167 2167 HOH HOH . C 3 HOH A 168 2168 2168 HOH HOH . C 3 HOH A 169 2169 2169 HOH HOH . C 3 HOH A 170 2170 2170 HOH HOH . C 3 HOH A 171 2171 2171 HOH HOH . C 3 HOH A 172 2172 2172 HOH HOH . C 3 HOH A 173 2173 2173 HOH HOH . C 3 HOH A 174 2174 2174 HOH HOH . C 3 HOH A 175 2175 2175 HOH HOH . C 3 HOH A 176 2176 2176 HOH HOH . C 3 HOH A 177 2177 2177 HOH HOH . C 3 HOH A 178 2178 2178 HOH HOH . C 3 HOH A 179 2179 2179 HOH HOH . C 3 HOH A 180 2180 2180 HOH HOH . C 3 HOH A 181 2181 2181 HOH HOH . C 3 HOH A 182 2182 2182 HOH HOH . C 3 HOH A 183 2183 2183 HOH HOH . C 3 HOH A 184 2184 2184 HOH HOH . C 3 HOH A 185 2185 2185 HOH HOH . C 3 HOH A 186 2186 2186 HOH HOH . C 3 HOH A 187 2187 2187 HOH HOH . C 3 HOH A 188 2188 2188 HOH HOH . C 3 HOH A 189 2189 2189 HOH HOH . C 3 HOH A 190 2190 2190 HOH HOH . C 3 HOH A 191 2191 2191 HOH HOH . C 3 HOH A 192 2192 2192 HOH HOH . C 3 HOH A 193 2193 2193 HOH HOH . C 3 HOH A 194 2194 2194 HOH HOH . C 3 HOH A 195 2195 2195 HOH HOH . C 3 HOH A 196 2196 2196 HOH HOH . C 3 HOH A 197 2197 2197 HOH HOH . C 3 HOH A 198 2198 2198 HOH HOH . C 3 HOH A 199 2199 2199 HOH HOH . C 3 HOH A 200 2200 2200 HOH HOH . C 3 HOH A 201 2201 2201 HOH HOH . C 3 HOH A 202 2202 2202 HOH HOH . C 3 HOH A 203 2203 2203 HOH HOH . C 3 HOH A 204 2204 2204 HOH HOH . C 3 HOH A 205 2205 2205 HOH HOH . C 3 HOH A 206 2206 2206 HOH HOH . C 3 HOH A 207 2207 2207 HOH HOH . C 3 HOH A 208 2208 2208 HOH HOH . C 3 HOH A 209 2209 2209 HOH HOH . C 3 HOH A 210 2210 2210 HOH HOH . C 3 HOH A 211 2211 2211 HOH HOH . C 3 HOH A 212 2212 2212 HOH HOH . C 3 HOH A 213 2213 2213 HOH HOH . C 3 HOH A 214 2214 2214 HOH HOH . C 3 HOH A 215 2215 2215 HOH HOH . C 3 HOH A 216 2216 2216 HOH HOH . C 3 HOH A 217 2217 2217 HOH HOH . C 3 HOH A 218 2218 2218 HOH HOH . C 3 HOH A 219 2219 2219 HOH HOH . C 3 HOH A 220 2220 2220 HOH HOH . C 3 HOH A 221 2221 2221 HOH HOH . C 3 HOH A 222 2222 2222 HOH HOH . C 3 HOH A 223 2223 2223 HOH HOH . C 3 HOH A 224 2224 2224 HOH HOH . C 3 HOH A 225 2225 2225 HOH HOH . C 3 HOH A 226 2226 2226 HOH HOH . C 3 HOH A 227 2227 2227 HOH HOH . C 3 HOH A 228 2228 2228 HOH HOH . C 3 HOH A 229 2229 2229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 DFZ . . . B 2 6.069 -2.285 19.491 1 29.07 ? C2 DFZ 1275 A 1 HETATM 2 C C10 DFZ . . . B 2 2.093 -4.281 19.729 1 28.24 ? C10 DFZ 1275 A 1 HETATM 3 C C11 DFZ . . . B 2 0.762 -4.643 19.974 1 28.44 ? C11 DFZ 1275 A 1 HETATM 4 C C12 DFZ . . . B 2 0.253 -5.909 19.701 1 28.86 ? C12 DFZ 1275 A 1 HETATM 5 C C13 DFZ . . . B 2 -1.081 -6.213 19.965 1 28.89 ? C13 DFZ 1275 A 1 HETATM 6 C C14 DFZ . . . B 2 -1.93 -5.253 20.509 1 28.65 ? C14 DFZ 1275 A 1 HETATM 7 C C15 DFZ . . . B 2 -1.434 -3.984 20.786 1 28.72 ? C15 DFZ 1275 A 1 HETATM 8 C C16 DFZ . . . B 2 -0.098 -3.688 20.517 1 28.91 ? C16 DFZ 1275 A 1 HETATM 9 C C19 DFZ . . . B 2 2.182 -6.343 17.179 1 30.51 ? C19 DFZ 1275 A 1 HETATM 10 C C20 DFZ . . . B 2 2.055 -7.592 16.567 1 31.26 ? C20 DFZ 1275 A 1 HETATM 11 C C21 DFZ . . . B 2 2.656 -8.72 17.126 1 30.92 ? C21 DFZ 1275 A 1 HETATM 12 C C22 DFZ . . . B 2 3.388 -8.596 18.304 1 30.52 ? C22 DFZ 1275 A 1 HETATM 13 N N1 DFZ . . . B 2 4.852 -2.156 19.981 1 28.54 ? N1 DFZ 1275 A 1 HETATM 14 C C6 DFZ . . . B 2 3.926 -3.099 19.77 1 28.46 ? C6 DFZ 1275 A 1 HETATM 15 C C5 DFZ . . . B 2 4.235 -4.23 19.021 1 29.07 ? C5 DFZ 1275 A 1 HETATM 16 N N9 DFZ . . . B 2 5.972 -5.362 17.782 1 30.8 ? N9 DFZ 1275 A 1 HETATM 17 C C4 DFZ . . . B 2 5.539 -4.334 18.517 1 29.85 ? C4 DFZ 1275 A 1 HETATM 18 N N3 DFZ . . . B 2 6.412 -3.344 18.782 1 29.6 ? N3 DFZ 1275 A 1 HETATM 19 N N90 DFZ . . . B 2 2.661 -3.161 20.165 1 28.1 ? N90 DFZ 1275 A 1 HETATM 20 C C17 DFZ . . . B 2 3.51 -7.35 18.916 1 30.16 ? C17 DFZ 1275 A 1 HETATM 21 C C1 DFZ . . . B 2 3.059 -4.983 18.995 1 29.11 ? C1 DFZ 1275 A 1 HETATM 22 C C18 DFZ . . . B 2 2.91 -6.219 18.36 1 29.76 ? C18 DFZ 1275 A 1 HETATM 23 C C23 DFZ . . . B 2 7.592 -4.399 16.192 1 31.38 ? C23 DFZ 1275 A 1 HETATM 24 C C8 DFZ . . . B 2 7.364 -5.435 17.302 1 31 ? C8 DFZ 1275 A 1 HETATM 25 O O24 DFZ . . . B 2 8.406 -3.325 16.689 1 32.03 ? O24 DFZ 1275 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #