data_2BUF
#
_model_server_result.job_id            Fyrjgi8dvtDrgEKd4usk8Q 
_model_server_result.datetime_utc      '2025-01-02 23:02:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2buf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"SA","auth_seq_id":1302}' 
#
_entry.id    2BUF 
#
_exptl.entry_id    2BUF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              189.166 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-ACETYL-L-GLUTAMATE 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         91.49 
_cell.angle_beta          92.03 
_cell.angle_gamma         107.56 
_cell.entry_id            2BUF 
_cell.length_a            71.86 
_cell.length_b            98.78 
_cell.length_c            162.9 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BUF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS hexameric 6 author_and_software_defined_assembly 1 
PQS hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 1 1 
G,H,I,J,K,L,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 P N N 
? 2 W N N 
? 2 AA N N 
? 2 CA N N 
? 2 FA N N 
? 2 JA N N 
? 2 NA N N 
? 2 PA N N 
? 2 SA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 N O1B ADP . B ADP 1300 1_555 O MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? 
metalc ? metalc2 N O2A ADP . B ADP 1300 1_555 O MG MG . B MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc3 R O2A ADP . C ADP 1300 1_555 S MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc4 R O2B ADP . C ADP 1300 1_555 S MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? 
metalc ? metalc5 R O3A ADP . C ADP 1300 1_555 S MG MG . C MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc6 U O1B ADP . D ADP 1300 1_555 V MG MG . D MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.13 ? 
metalc ? metalc7 U O3B ADP . D ADP 1300 1_555 V MG MG . D MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc8 U O2A ADP . D ADP 1300 1_555 V MG MG . D MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? 
metalc ? metalc9 Y O3B ADP . E ADP 1299 1_555 Z MG MG . E MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? 
metalc ? metalc10 Y O2A ADP . E ADP 1299 1_555 Z MG MG . E MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc11 DA O2A ADP . G ADP 1299 1_555 EA MG MG . G MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.096 ? 
metalc ? metalc12 DA O3A ADP . G ADP 1299 1_555 EA MG MG . G MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? 
metalc ? metalc13 DA O1B ADP . G ADP 1299 1_555 EA MG MG . G MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc14 H ND2 ASN 36 H ASN 37 1_555 IA MG MG . H MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? 
metalc ? metalc15 HA O3B ADP . H ADP 1297 1_555 IA MG MG . H MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? 
metalc ? metalc16 HA O3A ADP . H ADP 1297 1_555 IA MG MG . H MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
metalc ? metalc17 LA O1B ADP . I ADP 1298 1_555 MA MG MG . I MG 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc18 LA O2A ADP . I ADP 1298 1_555 MA MG MG . I MG 1299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? 
metalc ? metalc19 QA O2A ADP . L ADP 1300 1_555 RA MG MG . L MG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'C7 H11 N O5' 
_chem_comp.formula_weight    189.166 
_chem_comp.id                NLG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-ACETYL-L-GLUTAMATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CA C NLG sing 279 n n 
CA CB NLG sing 280 n n 
CA N2 NLG sing 281 n n 
CA HA NLG sing 282 n n 
C OXT NLG sing 283 n n 
C O NLG doub 284 n n 
OXT HXT NLG sing 285 n n 
CB CG NLG sing 286 n n 
CB HBC1 NLG sing 287 n n 
CB HBC2 NLG sing 288 n n 
CG CD NLG sing 289 n n 
CG HGC1 NLG sing 290 n n 
CG HGC2 NLG sing 291 n n 
CD OE1 NLG doub 292 n n 
CD OE2 NLG sing 293 n n 
OE2 HE2 NLG sing 294 n n 
C7 C8 NLG sing 295 n n 
C7 O7 NLG doub 296 n n 
C7 N2 NLG sing 297 n n 
C8 H8C1 NLG sing 298 n n 
C8 H8C2 NLG sing 299 n n 
C8 H8C3 NLG sing 300 n n 
N2 H2 NLG sing 301 n n 
#
_atom_sites.entry_id                     2BUF 
_atom_sites.fract_transf_matrix[1][1]    0.013916 
_atom_sites.fract_transf_matrix[1][2]    0.004404 
_atom_sites.fract_transf_matrix[1][3]    0.000663 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010618 
_atom_sites.fract_transf_matrix[2][3]    0.000409 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 NLG A 1 1302 1302 NLG NLG . 
N 3 ADP B 1 1300 1300 ADP ADP . 
O 4 MG B 1 1301 1301 MG MG . 
P 2 NLG B 1 1302 1302 NLG NLG . 
Q 5 CL B 1 1303 1303 CL CL . 
R 3 ADP C 1 1300 1300 ADP ADP . 
S 4 MG C 1 1301 1301 MG MG . 
T 5 CL C 1 1302 1302 CL CL . 
U 3 ADP D 1 1300 1300 ADP ADP . 
V 4 MG D 1 1301 1301 MG MG . 
W 2 NLG D 1 1302 1302 NLG NLG . 
X 5 CL D 1 1303 1303 CL CL . 
Y 3 ADP E 1 1299 1299 ADP ADP . 
Z 4 MG E 1 1300 1300 MG MG . 
AA 2 NLG E 1 1301 1301 NLG NLG . 
BA 3 ADP F 1 1299 1299 ADP ADP . 
CA 2 NLG F 1 1300 1300 NLG NLG . 
DA 3 ADP G 1 1299 1299 ADP ADP . 
EA 4 MG G 1 1300 1300 MG MG . 
FA 2 NLG G 1 1301 1301 NLG NLG . 
GA 5 CL G 1 1302 1302 CL CL . 
HA 3 ADP H 1 1297 1297 ADP ADP . 
IA 4 MG H 1 1298 1298 MG MG . 
JA 2 NLG H 1 1299 1299 NLG NLG . 
KA 5 CL H 1 1300 1300 CL CL . 
LA 3 ADP I 1 1298 1298 ADP ADP . 
MA 4 MG I 1 1299 1299 MG MG . 
NA 2 NLG I 1 1300 1300 NLG NLG . 
OA 3 ADP J 1 1298 1298 ADP ADP . 
PA 2 NLG K 1 1298 1298 NLG NLG . 
QA 3 ADP L 1 1300 1300 ADP ADP . 
RA 4 MG L 1 1301 1301 MG MG . 
SA 2 NLG L 1 1302 1302 NLG NLG . 
TA 5 CL L 1 1303 1303 CL CL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CA NLG . . . SA 2 -6.388 7.422 -120.164 1 111.25 ? CA NLG 1302 L 1 
HETATM 2 C C NLG . . . SA 2 -7.235 7.958 -121.059 1 111.89 ? C NLG 1302 L 1 
HETATM 3 O OXT NLG . . . SA 2 -8.031 7.337 -122.016 1 112.29 ? OXT NLG 1302 L 1 
HETATM 4 O O NLG . . . SA 2 -7.525 9.192 -121.247 1 112.27 ? O NLG 1302 L 1 
HETATM 5 C CB NLG . . . SA 2 -7.152 7.186 -118.881 1 110.19 ? CB NLG 1302 L 1 
HETATM 6 C CG NLG . . . SA 2 -8.308 6.103 -119.012 1 109.59 ? CG NLG 1302 L 1 
HETATM 7 C CD NLG . . . SA 2 -7.737 4.834 -118.39 1 109.34 ? CD NLG 1302 L 1 
HETATM 8 O OE1 NLG . . . SA 2 -6.76 4.619 -117.666 1 108.74 ? OE1 NLG 1302 L 1 
HETATM 9 O OE2 NLG . . . SA 2 -8.506 3.922 -118.774 1 110.05 ? OE2 NLG 1302 L 1 
HETATM 10 C C7 NLG . . . SA 2 -4.083 8.398 -120.039 1 110.11 ? C7 NLG 1302 L 1 
HETATM 11 C C8 NLG . . . SA 2 -3.274 9.415 -119.89 1 108.42 ? C8 NLG 1302 L 1 
HETATM 12 O O7 NLG . . . SA 2 -3.61 7.245 -120.218 1 110.39 ? O7 NLG 1302 L 1 
HETATM 13 N N2 NLG . . . SA 2 -5.218 8.41 -120.027 1 110.69 ? N2 NLG 1302 L 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           366 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           13 
#