data_2BVX # _model_server_result.job_id hWGqSMIdu1UipX0TP_ugHA _model_server_result.datetime_utc '2024-12-21 12:39:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bvx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1246}' # _entry.id 2BVX # _exptl.entry_id 2BVX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.421 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(5-CHLORO-BENZO[B]THIOPHEN-3-YLMETHYL)-2-[6-CHLORO-OXO-3-(2-PYRIDIN-2-YL-ETHYLAMINO)-2H-PYRAZIN-1-YL]-ACETAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.75 _cell.angle_gamma 90 _cell.entry_id 2BVX _cell.length_a 71.004 _cell.length_b 71.711 _cell.length_c 72.646 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BVX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 H CYS 42 1_555 A SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 119 H CYS 122 1_555 C SG CYS 9 L CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 173 H CYS 168 1_555 A SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 201 H CYS 191 1_555 A SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 B C GLU 9 I GLU 17 1_555 B N TYS 10 I TYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C TYS 10 I TYS 18 1_555 B N LEU 11 I LEU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C22 H23 Cl2 N5 O2 S' _chem_comp.formula_weight 492.421 _chem_comp.id 5CB _chem_comp.mon_nstd_flag . _chem_comp.name N-(5-CHLORO-BENZO[B]THIOPHEN-3-YLMETHYL)-2-[6-CHLORO-OXO-3-(2-PYRIDIN-2-YL-ETHYLAMINO)-2H-PYRAZIN-1-YL]-ACETAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C20 5CB sing 1 n n O1 H1 5CB sing 2 n n CL2 C6 5CB sing 3 n n CL3 C17 5CB sing 4 n n C4 C5 5CB sing 5 n y C4 C6 5CB doub 6 n y C4 H4 5CB sing 7 n n C5 C7 5CB doub 8 n y C5 H5 5CB sing 9 n n C6 C8 5CB sing 10 n y C7 C9 5CB sing 11 n y C7 S10 5CB sing 12 n y C8 C9 5CB doub 13 n y C8 H8 5CB sing 14 n n C9 C12 5CB sing 15 n y S10 C11 5CB sing 16 n y C11 C12 5CB doub 17 n y C11 H11 5CB sing 18 n n C12 C13 5CB sing 19 n n C13 N14 5CB sing 20 n n C13 H131 5CB sing 21 n n C13 H132 5CB sing 22 n n N14 C15 5CB sing 23 n n N14 H14 5CB sing 24 n n C15 C16 5CB sing 25 n n C15 O32 5CB doub 26 n n C16 N18 5CB sing 27 n n C16 H161 5CB sing 28 n n C16 H162 5CB sing 29 n n C17 N18 5CB sing 30 n n C17 C19 5CB sing 31 n n C17 H117 5CB sing 32 n n N18 C20 5CB sing 33 n n C19 N21 5CB sing 34 n n C19 H19 5CB sing 35 n n C19 H191 5CB sing 36 n n C20 C22 5CB sing 37 n n C20 H220 5CB sing 38 n n N21 C22 5CB doub 39 n n C22 N23 5CB sing 40 n n N23 C24 5CB sing 41 n n N23 H23 5CB sing 42 n n C24 C25 5CB sing 43 n n C24 H241 5CB sing 44 n n C24 H242 5CB sing 45 n n C25 C27 5CB sing 46 n n C25 H251 5CB sing 47 n n C25 H252 5CB sing 48 n n C26 C27 5CB sing 49 n y C26 C28 5CB doub 50 n y C26 H26 5CB sing 51 n n C27 N29 5CB doub 52 n y C28 C30 5CB sing 53 n y C28 H28 5CB sing 54 n n N29 C31 5CB sing 55 n y C30 C31 5CB doub 56 n y C30 H30 5CB sing 57 n n C31 H31 5CB sing 58 n n # _atom_sites.entry_id 2BVX _atom_sites.fract_transf_matrix[1][1] 0.014084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002674 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013945 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 5CB H 1 1246 1246 5CB 5CB . E 5 HOH H 1 2001 2001 HOH HOH . E 5 HOH H 2 2002 2002 HOH HOH . E 5 HOH H 3 2003 2003 HOH HOH . E 5 HOH H 4 2004 2004 HOH HOH . E 5 HOH H 5 2005 2005 HOH HOH . E 5 HOH H 6 2006 2006 HOH HOH . E 5 HOH H 7 2007 2007 HOH HOH . E 5 HOH H 8 2008 2008 HOH HOH . E 5 HOH H 9 2009 2009 HOH HOH . E 5 HOH H 10 2010 2010 HOH HOH . E 5 HOH H 11 2011 2011 HOH HOH . E 5 HOH H 12 2012 2012 HOH HOH . E 5 HOH H 13 2013 2013 HOH HOH . E 5 HOH H 14 2014 2014 HOH HOH . E 5 HOH H 15 2015 2015 HOH HOH . E 5 HOH H 16 2016 2016 HOH HOH . E 5 HOH H 17 2017 2017 HOH HOH . E 5 HOH H 18 2018 2018 HOH HOH . E 5 HOH H 19 2019 2019 HOH HOH . E 5 HOH H 20 2020 2020 HOH HOH . E 5 HOH H 21 2021 2021 HOH HOH . E 5 HOH H 22 2022 2022 HOH HOH . E 5 HOH H 23 2023 2023 HOH HOH . E 5 HOH H 24 2024 2024 HOH HOH . E 5 HOH H 25 2025 2025 HOH HOH . E 5 HOH H 26 2026 2026 HOH HOH . E 5 HOH H 27 2027 2027 HOH HOH . E 5 HOH H 28 2028 2028 HOH HOH . E 5 HOH H 29 2029 2029 HOH HOH . E 5 HOH H 30 2030 2030 HOH HOH . E 5 HOH H 31 2031 2031 HOH HOH . E 5 HOH H 32 2032 2032 HOH HOH . E 5 HOH H 33 2033 2033 HOH HOH . E 5 HOH H 34 2034 2034 HOH HOH . E 5 HOH H 35 2035 2035 HOH HOH . E 5 HOH H 36 2036 2036 HOH HOH . E 5 HOH H 37 2037 2037 HOH HOH . E 5 HOH H 38 2038 2038 HOH HOH . F 5 HOH I 1 2001 2001 HOH HOH . G 5 HOH L 1 2001 2001 HOH HOH . G 5 HOH L 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 5CB . . . D 4 12.211 -13.561 12.593 1 74.07 ? O1 5CB 1246 H 1 HETATM 2 CL CL2 5CB . . . D 4 16.35 -8.057 10.951 1 74.07 ? CL2 5CB 1246 H 1 HETATM 3 CL CL3 5CB . . . D 4 8.496 -13.097 16.031 1 74.07 ? CL3 5CB 1246 H 1 HETATM 4 C C4 5CB . . . D 4 17.738 -10.405 10.966 1 74.07 ? C4 5CB 1246 H 1 HETATM 5 C C5 5CB . . . D 4 18.088 -11.672 11.501 1 74.07 ? C5 5CB 1246 H 1 HETATM 6 C C6 5CB . . . D 4 16.762 -9.593 11.621 1 74.07 ? C6 5CB 1246 H 1 HETATM 7 C C7 5CB . . . D 4 17.445 -12.095 12.687 1 74.07 ? C7 5CB 1246 H 1 HETATM 8 C C8 5CB . . . D 4 16.13 -10.039 12.815 1 74.07 ? C8 5CB 1246 H 1 HETATM 9 C C9 5CB . . . D 4 16.481 -11.307 13.346 1 74.07 ? C9 5CB 1246 H 1 HETATM 10 S S10 5CB . . . D 4 17.639 -13.455 13.498 1 74.07 ? S10 5CB 1246 H 1 HETATM 11 C C11 5CB . . . D 4 16.587 -13.179 14.679 1 74.07 ? C11 5CB 1246 H 1 HETATM 12 C C12 5CB . . . D 4 15.989 -11.937 14.501 1 74.07 ? C12 5CB 1246 H 1 HETATM 13 C C13 5CB . . . D 4 14.945 -11.358 15.451 1 74.07 ? C13 5CB 1246 H 1 HETATM 14 N N14 5CB . . . D 4 13.562 -11.383 14.928 1 74.07 ? N14 5CB 1246 H 1 HETATM 15 C C15 5CB . . . D 4 12.508 -12.195 15.366 1 74.07 ? C15 5CB 1246 H 1 HETATM 16 C C16 5CB . . . D 4 11.141 -12.067 14.698 1 74.07 ? C16 5CB 1246 H 1 HETATM 17 C C17 5CB . . . D 4 9.319 -13.869 14.716 1 74.07 ? C17 5CB 1246 H 1 HETATM 18 N N18 5CB . . . D 4 10.53 -13.327 14.171 1 74.07 ? N18 5CB 1246 H 1 HETATM 19 C C19 5CB . . . D 4 8.79 -15.017 14.208 1 74.07 ? C19 5CB 1246 H 1 HETATM 20 C C20 5CB . . . D 4 11.177 -13.997 13.082 1 74.07 ? C20 5CB 1246 H 1 HETATM 21 N N21 5CB . . . D 4 9.464 -15.729 13.064 1 74.07 ? N21 5CB 1246 H 1 HETATM 22 C C22 5CB . . . D 4 10.585 -15.26 12.533 1 74.07 ? C22 5CB 1246 H 1 HETATM 23 N N23 5CB . . . D 4 11.208 -15.92 11.471 1 74.07 ? N23 5CB 1246 H 1 HETATM 24 C C24 5CB . . . D 4 10.594 -16.793 10.446 1 74.07 ? C24 5CB 1246 H 1 HETATM 25 C C25 5CB . . . D 4 9.954 -15.943 9.326 1 74.07 ? C25 5CB 1246 H 1 HETATM 26 C C26 5CB . . . D 4 7.459 -16.136 9.978 1 74.07 ? C26 5CB 1246 H 1 HETATM 27 C C27 5CB . . . D 4 8.565 -15.353 9.592 1 74.07 ? C27 5CB 1246 H 1 HETATM 28 C C28 5CB . . . D 4 6.214 -15.511 10.2 1 74.07 ? C28 5CB 1246 H 1 HETATM 29 N N29 5CB . . . D 4 8.388 -13.962 9.439 1 74.07 ? N29 5CB 1246 H 1 HETATM 30 C C30 5CB . . . D 4 6.048 -14.117 10.043 1 74.07 ? C30 5CB 1246 H 1 HETATM 31 C C31 5CB . . . D 4 7.144 -13.335 9.659 1 74.07 ? C31 5CB 1246 H 1 HETATM 32 O O32 5CB . . . D 4 12.667 -12.997 16.266 1 74.07 ? O32 5CB 1246 H 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #