data_2BWO # _model_server_result.job_id NV7giO6Ll-cLh6A9EoxKnw _model_server_result.datetime_utc '2024-10-10 11:22:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 2BWO # _exptl.entry_id 2BWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 867.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINYL-COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BWO _cell.length_a 67.935 _cell.length_b 91.356 _cell.length_c 247.644 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 248 A LYS 248 1_555 F C4A PLP . A PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale2 K OS1 SCA . E SCA 500 1_555 L O4A PLP . E PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? # _chem_comp.formula 'C25 H40 N7 O19 P3 S' _chem_comp.formula_weight 867.607 _chem_comp.id SCA _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BWO _atom_sites.fract_transf_matrix[1][1] 0.01472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SCA A 1 500 500 SCA SCA . F 3 PLP A 1 600 600 PLP PLP . G 2 SCA B 1 500 500 SCA SCA . H 3 PLP B 1 600 600 PLP PLP . I 2 SCA D 1 500 500 SCA SCA . J 3 PLP D 1 600 600 PLP PLP . K 2 SCA E 1 500 500 SCA SCA . L 3 PLP E 1 600 600 PLP PLP . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . O 4 HOH D 1 2001 2001 HOH HOH . O 4 HOH D 2 2002 2002 HOH HOH . O 4 HOH D 3 2003 2003 HOH HOH . O 4 HOH D 4 2004 2004 HOH HOH . O 4 HOH D 5 2005 2005 HOH HOH . O 4 HOH D 6 2006 2006 HOH HOH . O 4 HOH D 7 2007 2007 HOH HOH . O 4 HOH D 8 2008 2008 HOH HOH . O 4 HOH D 9 2009 2009 HOH HOH . O 4 HOH D 10 2010 2010 HOH HOH . O 4 HOH D 11 2011 2011 HOH HOH . O 4 HOH D 12 2012 2012 HOH HOH . O 4 HOH D 13 2013 2013 HOH HOH . O 4 HOH D 14 2014 2014 HOH HOH . O 4 HOH D 15 2015 2015 HOH HOH . O 4 HOH D 16 2016 2016 HOH HOH . O 4 HOH D 17 2017 2017 HOH HOH . O 4 HOH D 18 2018 2018 HOH HOH . O 4 HOH D 19 2019 2019 HOH HOH . O 4 HOH D 20 2020 2020 HOH HOH . O 4 HOH D 21 2021 2021 HOH HOH . O 4 HOH D 22 2022 2022 HOH HOH . O 4 HOH D 23 2023 2023 HOH HOH . O 4 HOH D 24 2024 2024 HOH HOH . O 4 HOH D 25 2025 2025 HOH HOH . O 4 HOH D 26 2026 2026 HOH HOH . O 4 HOH D 27 2027 2027 HOH HOH . O 4 HOH D 28 2028 2028 HOH HOH . O 4 HOH D 29 2029 2029 HOH HOH . O 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH E 1 2001 2001 HOH HOH . P 4 HOH E 2 2002 2002 HOH HOH . P 4 HOH E 3 2003 2003 HOH HOH . P 4 HOH E 4 2004 2004 HOH HOH . P 4 HOH E 5 2005 2005 HOH HOH . P 4 HOH E 6 2006 2006 HOH HOH . P 4 HOH E 7 2007 2007 HOH HOH . P 4 HOH E 8 2008 2008 HOH HOH . P 4 HOH E 9 2009 2009 HOH HOH . P 4 HOH E 10 2010 2010 HOH HOH . P 4 HOH E 11 2011 2011 HOH HOH . P 4 HOH E 12 2012 2012 HOH HOH . P 4 HOH E 13 2013 2013 HOH HOH . P 4 HOH E 14 2014 2014 HOH HOH . P 4 HOH E 15 2015 2015 HOH HOH . P 4 HOH E 16 2016 2016 HOH HOH . P 4 HOH E 17 2017 2017 HOH HOH . P 4 HOH E 18 2018 2018 HOH HOH . P 4 HOH E 19 2019 2019 HOH HOH . P 4 HOH E 20 2020 2020 HOH HOH . P 4 HOH E 21 2021 2021 HOH HOH . P 4 HOH E 22 2022 2022 HOH HOH . P 4 HOH E 23 2023 2023 HOH HOH . P 4 HOH E 24 2024 2024 HOH HOH . P 4 HOH E 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 SCA . . . E 2 18.357 -6.916 15.787 0.75 48.65 ? C8 SCA 500 A 1 HETATM 2 N N9 SCA . . . E 2 17.347 -6.448 16.562 0.75 52.28 ? N9 SCA 500 A 1 HETATM 3 C C4 SCA . . . E 2 16.63 -5.59 15.84 0.75 49.04 ? C4 SCA 500 A 1 HETATM 4 C C5 SCA . . . E 2 17.271 -5.522 14.512 0.75 48.19 ? C5 SCA 500 A 1 HETATM 5 N N7 SCA . . . E 2 18.311 -6.364 14.544 0.75 47.42 ? N7 SCA 500 A 1 HETATM 6 N N3 SCA . . . E 2 15.533 -4.836 16.094 0.75 46.71 ? N3 SCA 500 A 1 HETATM 7 C C2 SCA . . . E 2 15.028 -4.029 15.136 0.75 49.26 ? C2 SCA 500 A 1 HETATM 8 N N1 SCA . . . E 2 15.568 -3.917 13.899 0.75 50.83 ? N1 SCA 500 A 1 HETATM 9 C C6 SCA . . . E 2 16.666 -4.613 13.517 0.75 48.93 ? C6 SCA 500 A 1 HETATM 10 N N6 SCA . . . E 2 17.169 -4.479 12.274 0.75 48.24 ? N6 SCA 500 A 1 HETATM 11 C C1' SCA . . . E 2 17.039 -6.821 17.98 0.75 56.6 ? C1' SCA 500 A 1 HETATM 12 C C2' SCA . . . E 2 16.729 -8.31 18.066 0.75 66.24 ? C2' SCA 500 A 1 HETATM 13 O O2' SCA . . . E 2 15.343 -8.634 17.781 0.75 63.24 ? O2' SCA 500 A 1 HETATM 14 C C3' SCA . . . E 2 17.147 -8.636 19.487 0.75 71.61 ? C3' SCA 500 A 1 HETATM 15 O O3' SCA . . . E 2 15.992 -8.958 20.265 0.75 79.31 ? O3' SCA 500 A 1 HETATM 16 C C4' SCA . . . E 2 17.962 -7.454 20.028 0.75 67.23 ? C4' SCA 500 A 1 HETATM 17 O O4' SCA . . . E 2 18.12 -6.568 18.919 0.75 62.39 ? O4' SCA 500 A 1 HETATM 18 C C5' SCA . . . E 2 19.281 -8.098 20.026 0 112.41 ? C5' SCA 500 A 1 HETATM 19 O O5' SCA . . . E 2 20.15 -8.111 18.891 0 117.03 ? O5' SCA 500 A 1 HETATM 20 P P1 SCA . . . E 2 20.603 -9.505 18.222 0 119.91 ? P1 SCA 500 A 1 HETATM 21 O O11 SCA . . . E 2 19.4 -10.184 17.696 0 119.3 ? O11 SCA 500 A 1 HETATM 22 O O12 SCA . . . E 2 21.482 -10.22 19.173 0 119.63 ? O12 SCA 500 A 1 HETATM 23 O O6 SCA . . . E 2 21.49 -9.008 16.968 0 121.36 ? O6 SCA 500 A 1 HETATM 24 P P2 SCA . . . E 2 23.089 -9.219 16.951 0 122.12 ? P2 SCA 500 A 1 HETATM 25 O O21 SCA . . . E 2 23.373 -10.641 17.245 0 121.73 ? O21 SCA 500 A 1 HETATM 26 O O22 SCA . . . E 2 23.708 -8.169 17.793 0 121.51 ? O22 SCA 500 A 1 HETATM 27 O O7 SCA . . . E 2 23.461 -8.935 15.4 0 120.5 ? O7 SCA 500 A 1 HETATM 28 C CPB SCA . . . E 2 23.538 -7.594 14.89 0 116.64 ? CPB SCA 500 A 1 HETATM 29 C CPA SCA . . . E 2 24.057 -7.566 13.444 0 114.14 ? CPA SCA 500 A 1 HETATM 30 C CP7 SCA . . . E 2 25.053 -6.414 13.281 0 111.33 ? CP7 SCA 500 A 1 HETATM 31 C CP9 SCA . . . E 2 22.885 -7.363 12.479 0 113.62 ? CP9 SCA 500 A 1 HETATM 32 C CP8 SCA . . . E 2 24.749 -8.892 13.118 0 113.74 ? CP8 SCA 500 A 1 HETATM 33 O OP3 SCA . . . E 2 25.18 -6.077 11.9 0 109.62 ? OP3 SCA 500 A 1 HETATM 34 C CP6 SCA . . . E 2 24.549 -5.193 14.053 0 109.14 ? CP6 SCA 500 A 1 HETATM 35 O OP2 SCA . . . E 2 23.846 -5.321 15.054 0 109.63 ? OP2 SCA 500 A 1 HETATM 36 N NP2 SCA . . . E 2 24.927 -4.019 13.554 0 105.61 ? NP2 SCA 500 A 1 HETATM 37 C CP5 SCA . . . E 2 24.541 -2.744 14.172 0 100.93 ? CP5 SCA 500 A 1 HETATM 38 C CP4 SCA . . . E 2 23.71 -1.925 13.185 0 98.26 ? CP4 SCA 500 A 1 HETATM 39 C CP3 SCA . . . E 2 24.552 -1.433 12.007 0 96.13 ? CP3 SCA 500 A 1 HETATM 40 O OP1 SCA . . . E 2 24.331 -1.836 10.866 0 96.99 ? OP1 SCA 500 A 1 HETATM 41 N NP1 SCA . . . E 2 25.504 -0.555 12.316 0 91.86 ? NP1 SCA 500 A 1 HETATM 42 C CP2 SCA . . . E 2 26.402 0.012 11.299 0 87.93 ? CP2 SCA 500 A 1 HETATM 43 C CP1 SCA . . . E 2 26.479 1.528 11.477 0 84.94 ? CP1 SCA 500 A 1 HETATM 44 P P3 SCA . . . E 2 15.617 -10.541 20.376 0.75 84.16 ? P3 SCA 500 A 1 HETATM 45 O O31 SCA . . . E 2 16.932 -11.284 20.106 0.75 78.76 ? O31 SCA 500 A 1 HETATM 46 O O32 SCA . . . E 2 15.11 -10.614 21.802 0.75 79.24 ? O32 SCA 500 A 1 HETATM 47 O O33 SCA . . . E 2 14.566 -10.779 19.312 0.75 77.66 ? O33 SCA 500 A 1 HETATM 48 S S SCA . . . E 2 27.825 2.312 10.518 0 83.34 ? S SCA 500 A 1 HETATM 49 C CS1 SCA . . . E 2 28.584 3.27 11.774 0 80.13 ? CS1 SCA 500 A 1 HETATM 50 O OS1 SCA . . . E 2 27.903 4.048 12.44 0 80.29 ? OS1 SCA 500 A 1 HETATM 51 C CS2 SCA . . . E 2 30.09 3.134 12.025 0 75.27 ? CS2 SCA 500 A 1 HETATM 52 C CS3 SCA . . . E 2 30.578 2.87 12.919 0.75 18.91 ? CS3 SCA 500 A 1 HETATM 53 C CS4 SCA . . . E 2 31.87 2.407 13.571 0.75 20.7 ? CS4 SCA 500 A 1 HETATM 54 O OS4 SCA . . . E 2 32.543 3.215 14.243 0.75 24.03 ? OS4 SCA 500 A 1 HETATM 55 O OS5 SCA . . . E 2 32.235 1.219 13.447 0.75 21.77 ? OS5 SCA 500 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 55 #