data_2BWO
#
_model_server_result.job_id            bIystmxQoQaH52FhbWyq8w 
_model_server_result.datetime_utc      '2024-10-10 11:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bwo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":500}' 
#
_entry.id    2BWO 
#
_exptl.entry_id    2BWO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              867.607 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SUCCINYL-COENZYME A' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BWO 
_cell.length_a            67.935 
_cell.length_b            91.356 
_cell.length_c            247.644 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BWO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 248 A LYS 248 1_555 F C4A PLP . A PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? 
covale ? covale2 K OS1 SCA . E SCA 500 1_555 L O4A PLP . E PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? 
#
_chem_comp.formula           'C25 H40 N7 O19 P3 S' 
_chem_comp.formula_weight    867.607 
_chem_comp.id                SCA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SUCCINYL-COENZYME A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2BWO 
_atom_sites.fract_transf_matrix[1][1]    0.01472 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010946 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004038 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SCA A 1 500 500 SCA SCA . 
F 3 PLP A 1 600 600 PLP PLP . 
G 2 SCA B 1 500 500 SCA SCA . 
H 3 PLP B 1 600 600 PLP PLP . 
I 2 SCA D 1 500 500 SCA SCA . 
J 3 PLP D 1 600 600 PLP PLP . 
K 2 SCA E 1 500 500 SCA SCA . 
L 3 PLP E 1 600 600 PLP PLP . 
M 4 HOH A 1 2001 2001 HOH HOH . 
M 4 HOH A 2 2002 2002 HOH HOH . 
M 4 HOH A 3 2003 2003 HOH HOH . 
M 4 HOH A 4 2004 2004 HOH HOH . 
M 4 HOH A 5 2005 2005 HOH HOH . 
M 4 HOH A 6 2006 2006 HOH HOH . 
M 4 HOH A 7 2007 2007 HOH HOH . 
M 4 HOH A 8 2008 2008 HOH HOH . 
M 4 HOH A 9 2009 2009 HOH HOH . 
M 4 HOH A 10 2010 2010 HOH HOH . 
M 4 HOH A 11 2011 2011 HOH HOH . 
M 4 HOH A 12 2012 2012 HOH HOH . 
M 4 HOH A 13 2013 2013 HOH HOH . 
M 4 HOH A 14 2014 2014 HOH HOH . 
M 4 HOH A 15 2015 2015 HOH HOH . 
M 4 HOH A 16 2016 2016 HOH HOH . 
M 4 HOH A 17 2017 2017 HOH HOH . 
M 4 HOH A 18 2018 2018 HOH HOH . 
M 4 HOH A 19 2019 2019 HOH HOH . 
M 4 HOH A 20 2020 2020 HOH HOH . 
M 4 HOH A 21 2021 2021 HOH HOH . 
M 4 HOH A 22 2022 2022 HOH HOH . 
M 4 HOH A 23 2023 2023 HOH HOH . 
M 4 HOH A 24 2024 2024 HOH HOH . 
M 4 HOH A 25 2025 2025 HOH HOH . 
M 4 HOH A 26 2026 2026 HOH HOH . 
M 4 HOH A 27 2027 2027 HOH HOH . 
M 4 HOH A 28 2028 2028 HOH HOH . 
M 4 HOH A 29 2029 2029 HOH HOH . 
M 4 HOH A 30 2030 2030 HOH HOH . 
M 4 HOH A 31 2031 2031 HOH HOH . 
M 4 HOH A 32 2032 2032 HOH HOH . 
N 4 HOH B 1 2001 2001 HOH HOH . 
N 4 HOH B 2 2002 2002 HOH HOH . 
N 4 HOH B 3 2003 2003 HOH HOH . 
N 4 HOH B 4 2004 2004 HOH HOH . 
N 4 HOH B 5 2005 2005 HOH HOH . 
N 4 HOH B 6 2006 2006 HOH HOH . 
N 4 HOH B 7 2007 2007 HOH HOH . 
N 4 HOH B 8 2008 2008 HOH HOH . 
N 4 HOH B 9 2009 2009 HOH HOH . 
N 4 HOH B 10 2010 2010 HOH HOH . 
N 4 HOH B 11 2011 2011 HOH HOH . 
N 4 HOH B 12 2012 2012 HOH HOH . 
N 4 HOH B 13 2013 2013 HOH HOH . 
N 4 HOH B 14 2014 2014 HOH HOH . 
N 4 HOH B 15 2015 2015 HOH HOH . 
N 4 HOH B 16 2016 2016 HOH HOH . 
N 4 HOH B 17 2017 2017 HOH HOH . 
N 4 HOH B 18 2018 2018 HOH HOH . 
N 4 HOH B 19 2019 2019 HOH HOH . 
N 4 HOH B 20 2020 2020 HOH HOH . 
N 4 HOH B 21 2021 2021 HOH HOH . 
N 4 HOH B 22 2022 2022 HOH HOH . 
N 4 HOH B 23 2023 2023 HOH HOH . 
O 4 HOH D 1 2001 2001 HOH HOH . 
O 4 HOH D 2 2002 2002 HOH HOH . 
O 4 HOH D 3 2003 2003 HOH HOH . 
O 4 HOH D 4 2004 2004 HOH HOH . 
O 4 HOH D 5 2005 2005 HOH HOH . 
O 4 HOH D 6 2006 2006 HOH HOH . 
O 4 HOH D 7 2007 2007 HOH HOH . 
O 4 HOH D 8 2008 2008 HOH HOH . 
O 4 HOH D 9 2009 2009 HOH HOH . 
O 4 HOH D 10 2010 2010 HOH HOH . 
O 4 HOH D 11 2011 2011 HOH HOH . 
O 4 HOH D 12 2012 2012 HOH HOH . 
O 4 HOH D 13 2013 2013 HOH HOH . 
O 4 HOH D 14 2014 2014 HOH HOH . 
O 4 HOH D 15 2015 2015 HOH HOH . 
O 4 HOH D 16 2016 2016 HOH HOH . 
O 4 HOH D 17 2017 2017 HOH HOH . 
O 4 HOH D 18 2018 2018 HOH HOH . 
O 4 HOH D 19 2019 2019 HOH HOH . 
O 4 HOH D 20 2020 2020 HOH HOH . 
O 4 HOH D 21 2021 2021 HOH HOH . 
O 4 HOH D 22 2022 2022 HOH HOH . 
O 4 HOH D 23 2023 2023 HOH HOH . 
O 4 HOH D 24 2024 2024 HOH HOH . 
O 4 HOH D 25 2025 2025 HOH HOH . 
O 4 HOH D 26 2026 2026 HOH HOH . 
O 4 HOH D 27 2027 2027 HOH HOH . 
O 4 HOH D 28 2028 2028 HOH HOH . 
O 4 HOH D 29 2029 2029 HOH HOH . 
O 4 HOH D 30 2030 2030 HOH HOH . 
P 4 HOH E 1 2001 2001 HOH HOH . 
P 4 HOH E 2 2002 2002 HOH HOH . 
P 4 HOH E 3 2003 2003 HOH HOH . 
P 4 HOH E 4 2004 2004 HOH HOH . 
P 4 HOH E 5 2005 2005 HOH HOH . 
P 4 HOH E 6 2006 2006 HOH HOH . 
P 4 HOH E 7 2007 2007 HOH HOH . 
P 4 HOH E 8 2008 2008 HOH HOH . 
P 4 HOH E 9 2009 2009 HOH HOH . 
P 4 HOH E 10 2010 2010 HOH HOH . 
P 4 HOH E 11 2011 2011 HOH HOH . 
P 4 HOH E 12 2012 2012 HOH HOH . 
P 4 HOH E 13 2013 2013 HOH HOH . 
P 4 HOH E 14 2014 2014 HOH HOH . 
P 4 HOH E 15 2015 2015 HOH HOH . 
P 4 HOH E 16 2016 2016 HOH HOH . 
P 4 HOH E 17 2017 2017 HOH HOH . 
P 4 HOH E 18 2018 2018 HOH HOH . 
P 4 HOH E 19 2019 2019 HOH HOH . 
P 4 HOH E 20 2020 2020 HOH HOH . 
P 4 HOH E 21 2021 2021 HOH HOH . 
P 4 HOH E 22 2022 2022 HOH HOH . 
P 4 HOH E 23 2023 2023 HOH HOH . 
P 4 HOH E 24 2024 2024 HOH HOH . 
P 4 HOH E 25 2025 2025 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C8 SCA . . . G 2 11.47 6.168 38.015 0.75 42.29 ? C8 SCA 500 B 1 
HETATM 2 N N9 SCA . . . G 2 12.12 5.093 37.544 0.75 43.81 ? N9 SCA 500 B 1 
HETATM 3 C C4 SCA . . . G 2 13.357 5.088 38.037 0.75 41.96 ? C4 SCA 500 B 1 
HETATM 4 C C5 SCA . . . G 2 13.488 6.268 38.9 0.75 41.95 ? C5 SCA 500 B 1 
HETATM 5 N N7 SCA . . . G 2 12.299 6.891 38.838 0.75 42.12 ? N7 SCA 500 B 1 
HETATM 6 N N3 SCA . . . G 2 14.418 4.261 37.881 0.75 41.13 ? N3 SCA 500 B 1 
HETATM 7 C C2 SCA . . . G 2 15.569 4.501 38.528 0.75 43.29 ? C2 SCA 500 B 1 
HETATM 8 N N1 SCA . . . G 2 15.768 5.572 39.333 0.75 44.53 ? N1 SCA 500 B 1 
HETATM 9 C C6 SCA . . . G 2 14.808 6.486 39.568 0.75 44.33 ? C6 SCA 500 B 1 
HETATM 10 N N6 SCA . . . G 2 15.075 7.54 40.379 0.75 41.62 ? N6 SCA 500 B 1 
HETATM 11 C C1' SCA . . . G 2 11.613 4.037 36.632 0.75 49.31 ? C1' SCA 500 B 1 
HETATM 12 C C2' SCA . . . G 2 10.398 3.285 37.192 0.75 56.4 ? C2' SCA 500 B 1 
HETATM 13 O O2' SCA . . . G 2 10.75 2.096 37.94 0.75 52.78 ? O2' SCA 500 B 1 
HETATM 14 C C3' SCA . . . G 2 9.689 2.961 35.895 0.75 59.96 ? C3' SCA 500 B 1 
HETATM 15 O O3' SCA . . . G 2 10.38 1.876 35.282 0.75 63.72 ? O3' SCA 500 B 1 
HETATM 16 C C4' SCA . . . G 2 9.915 4.192 35.024 0.75 58.89 ? C4' SCA 500 B 1 
HETATM 17 O O4' SCA . . . G 2 11.266 4.531 35.314 0.75 55.83 ? O4' SCA 500 B 1 
HETATM 18 C C5' SCA . . . G 2 9.066 5.389 35.475 0.75 61.12 ? C5' SCA 500 B 1 
HETATM 19 O O5' SCA . . . G 2 7.691 5.08 35.401 0.75 62.38 ? O5' SCA 500 B 1 
HETATM 20 P P1 SCA . . . G 2 6.865 5.638 34.141 0.75 74 ? P1 SCA 500 B 1 
HETATM 21 O O11 SCA . . . G 2 5.806 4.65 33.638 0.75 54.33 ? O11 SCA 500 B 1 
HETATM 22 O O12 SCA . . . G 2 7.901 6.314 33.238 0.75 71.39 ? O12 SCA 500 B 1 
HETATM 23 O O6 SCA . . . G 2 6.459 6.827 35.108 0 110.18 ? O6 SCA 500 B 1 
HETATM 24 P P2 SCA . . . G 2 7.302 8.178 35.333 0 114.13 ? P2 SCA 500 B 1 
HETATM 25 O O21 SCA . . . G 2 6.44 9.329 34.988 0 113.72 ? O21 SCA 500 B 1 
HETATM 26 O O22 SCA . . . G 2 8.61 8.022 34.661 0 113.71 ? O22 SCA 500 B 1 
HETATM 27 O O7 SCA . . . G 2 7.533 8.175 36.929 0 113.54 ? O7 SCA 500 B 1 
HETATM 28 C CPB SCA . . . G 2 8.695 8.793 37.486 0 113.12 ? CPB SCA 500 B 1 
HETATM 29 C CPA SCA . . . G 2 8.684 10.308 37.26 0 112.09 ? CPA SCA 500 B 1 
HETATM 30 C CP7 SCA . . . G 2 9.872 10.703 36.375 0 110.48 ? CP7 SCA 500 B 1 
HETATM 31 C CP9 SCA . . . G 2 8.785 11.019 38.61 0 111.88 ? CP9 SCA 500 B 1 
HETATM 32 C CP8 SCA . . . G 2 7.372 10.699 36.582 0 112.04 ? CP8 SCA 500 B 1 
HETATM 33 O OP3 SCA . . . G 2 9.436 10.852 35.021 0 109.26 ? OP3 SCA 500 B 1 
HETATM 34 C CP6 SCA . . . G 2 10.512 12.012 36.852 0 108.42 ? CP6 SCA 500 B 1 
HETATM 35 O OP2 SCA . . . G 2 9.935 12.755 37.638 0 107.93 ? OP2 SCA 500 B 1 
HETATM 36 N NP2 SCA . . . G 2 11.714 12.269 36.336 0 105.79 ? NP2 SCA 500 B 1 
HETATM 37 C CP5 SCA . . . G 2 12.468 13.485 36.683 0 102.4 ? CP5 SCA 500 B 1 
HETATM 38 C CP4 SCA . . . G 2 13.658 13.66 35.739 0 99.35 ? CP4 SCA 500 B 1 
HETATM 39 C CP3 SCA . . . G 2 14.719 14.572 36.361 0 98.36 ? CP3 SCA 500 B 1 
HETATM 40 O OP1 SCA . . . G 2 15.174 14.34 37.473 0 98.1 ? OP1 SCA 500 B 1 
HETATM 41 N NP1 SCA . . . G 2 15.091 15.605 35.612 0 96.59 ? NP1 SCA 500 B 1 
HETATM 42 C CP2 SCA . . . G 2 16.095 16.58 36.065 0 93.65 ? CP2 SCA 500 B 1 
HETATM 43 C CP1 SCA . . . G 2 15.984 17.854 35.224 0 92.02 ? CP1 SCA 500 B 1 
HETATM 44 P P3 SCA . . . G 2 9.626 0.465 35.134 0.75 72.8 ? P3 SCA 500 B 1 
HETATM 45 O O31 SCA . . . G 2 10.334 -0.169 33.948 0.75 71.32 ? O31 SCA 500 B 1 
HETATM 46 O O32 SCA . . . G 2 9.785 -0.234 36.462 0.75 71.08 ? O32 SCA 500 B 1 
HETATM 47 O O33 SCA . . . G 2 8.168 0.825 34.868 0.75 77.42 ? O33 SCA 500 B 1 
HETATM 48 S S SCA . . . G 2 17.577 18.733 35.025 0 89.71 ? S SCA 500 B 1 
HETATM 49 C CS1 SCA . . . G 2 17.463 19.246 33.354 0 85.14 ? CS1 SCA 500 B 1 
HETATM 50 O OS1 SCA . . . G 2 18.26 18.8 32.531 0 85.61 ? OS1 SCA 500 B 1 
HETATM 51 C CS2 SCA . . . G 2 16.39 20.259 32.936 0 80.36 ? CS2 SCA 500 B 1 
HETATM 52 C CS3 SCA . . . G 2 15.797 20.064 31.946 0.75 28.17 ? CS3 SCA 500 B 1 
HETATM 53 C CS4 SCA . . . G 2 14.829 20.995 31.217 0.75 32.33 ? CS4 SCA 500 B 1 
HETATM 54 O OS4 SCA . . . G 2 15.232 21.637 30.236 0.75 30.4 ? OS4 SCA 500 B 1 
HETATM 55 O OS5 SCA . . . G 2 13.648 21.109 31.607 0.75 30.3 ? OS5 SCA 500 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           55 
#