data_2BWO # _model_server_result.job_id 3VXFAG3PvioOF1QaVJEMgQ _model_server_result.datetime_utc '2024-10-10 11:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 2BWO # _exptl.entry_id 2BWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 867.607 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINYL-COENZYME A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BWO _cell.length_a 67.935 _cell.length_b 91.356 _cell.length_c 247.644 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 248 A LYS 248 1_555 F C4A PLP . A PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale2 K OS1 SCA . E SCA 500 1_555 L O4A PLP . E PLP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? # _chem_comp.formula 'C25 H40 N7 O19 P3 S' _chem_comp.formula_weight 867.607 _chem_comp.id SCA _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINYL-COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2BWO _atom_sites.fract_transf_matrix[1][1] 0.01472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010946 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SCA A 1 500 500 SCA SCA . F 3 PLP A 1 600 600 PLP PLP . G 2 SCA B 1 500 500 SCA SCA . H 3 PLP B 1 600 600 PLP PLP . I 2 SCA D 1 500 500 SCA SCA . J 3 PLP D 1 600 600 PLP PLP . K 2 SCA E 1 500 500 SCA SCA . L 3 PLP E 1 600 600 PLP PLP . M 4 HOH A 1 2001 2001 HOH HOH . M 4 HOH A 2 2002 2002 HOH HOH . M 4 HOH A 3 2003 2003 HOH HOH . M 4 HOH A 4 2004 2004 HOH HOH . M 4 HOH A 5 2005 2005 HOH HOH . M 4 HOH A 6 2006 2006 HOH HOH . M 4 HOH A 7 2007 2007 HOH HOH . M 4 HOH A 8 2008 2008 HOH HOH . M 4 HOH A 9 2009 2009 HOH HOH . M 4 HOH A 10 2010 2010 HOH HOH . M 4 HOH A 11 2011 2011 HOH HOH . M 4 HOH A 12 2012 2012 HOH HOH . M 4 HOH A 13 2013 2013 HOH HOH . M 4 HOH A 14 2014 2014 HOH HOH . M 4 HOH A 15 2015 2015 HOH HOH . M 4 HOH A 16 2016 2016 HOH HOH . M 4 HOH A 17 2017 2017 HOH HOH . M 4 HOH A 18 2018 2018 HOH HOH . M 4 HOH A 19 2019 2019 HOH HOH . M 4 HOH A 20 2020 2020 HOH HOH . M 4 HOH A 21 2021 2021 HOH HOH . M 4 HOH A 22 2022 2022 HOH HOH . M 4 HOH A 23 2023 2023 HOH HOH . M 4 HOH A 24 2024 2024 HOH HOH . M 4 HOH A 25 2025 2025 HOH HOH . M 4 HOH A 26 2026 2026 HOH HOH . M 4 HOH A 27 2027 2027 HOH HOH . M 4 HOH A 28 2028 2028 HOH HOH . M 4 HOH A 29 2029 2029 HOH HOH . M 4 HOH A 30 2030 2030 HOH HOH . M 4 HOH A 31 2031 2031 HOH HOH . M 4 HOH A 32 2032 2032 HOH HOH . N 4 HOH B 1 2001 2001 HOH HOH . N 4 HOH B 2 2002 2002 HOH HOH . N 4 HOH B 3 2003 2003 HOH HOH . N 4 HOH B 4 2004 2004 HOH HOH . N 4 HOH B 5 2005 2005 HOH HOH . N 4 HOH B 6 2006 2006 HOH HOH . N 4 HOH B 7 2007 2007 HOH HOH . N 4 HOH B 8 2008 2008 HOH HOH . N 4 HOH B 9 2009 2009 HOH HOH . N 4 HOH B 10 2010 2010 HOH HOH . N 4 HOH B 11 2011 2011 HOH HOH . N 4 HOH B 12 2012 2012 HOH HOH . N 4 HOH B 13 2013 2013 HOH HOH . N 4 HOH B 14 2014 2014 HOH HOH . N 4 HOH B 15 2015 2015 HOH HOH . N 4 HOH B 16 2016 2016 HOH HOH . N 4 HOH B 17 2017 2017 HOH HOH . N 4 HOH B 18 2018 2018 HOH HOH . N 4 HOH B 19 2019 2019 HOH HOH . N 4 HOH B 20 2020 2020 HOH HOH . N 4 HOH B 21 2021 2021 HOH HOH . N 4 HOH B 22 2022 2022 HOH HOH . N 4 HOH B 23 2023 2023 HOH HOH . O 4 HOH D 1 2001 2001 HOH HOH . O 4 HOH D 2 2002 2002 HOH HOH . O 4 HOH D 3 2003 2003 HOH HOH . O 4 HOH D 4 2004 2004 HOH HOH . O 4 HOH D 5 2005 2005 HOH HOH . O 4 HOH D 6 2006 2006 HOH HOH . O 4 HOH D 7 2007 2007 HOH HOH . O 4 HOH D 8 2008 2008 HOH HOH . O 4 HOH D 9 2009 2009 HOH HOH . O 4 HOH D 10 2010 2010 HOH HOH . O 4 HOH D 11 2011 2011 HOH HOH . O 4 HOH D 12 2012 2012 HOH HOH . O 4 HOH D 13 2013 2013 HOH HOH . O 4 HOH D 14 2014 2014 HOH HOH . O 4 HOH D 15 2015 2015 HOH HOH . O 4 HOH D 16 2016 2016 HOH HOH . O 4 HOH D 17 2017 2017 HOH HOH . O 4 HOH D 18 2018 2018 HOH HOH . O 4 HOH D 19 2019 2019 HOH HOH . O 4 HOH D 20 2020 2020 HOH HOH . O 4 HOH D 21 2021 2021 HOH HOH . O 4 HOH D 22 2022 2022 HOH HOH . O 4 HOH D 23 2023 2023 HOH HOH . O 4 HOH D 24 2024 2024 HOH HOH . O 4 HOH D 25 2025 2025 HOH HOH . O 4 HOH D 26 2026 2026 HOH HOH . O 4 HOH D 27 2027 2027 HOH HOH . O 4 HOH D 28 2028 2028 HOH HOH . O 4 HOH D 29 2029 2029 HOH HOH . O 4 HOH D 30 2030 2030 HOH HOH . P 4 HOH E 1 2001 2001 HOH HOH . P 4 HOH E 2 2002 2002 HOH HOH . P 4 HOH E 3 2003 2003 HOH HOH . P 4 HOH E 4 2004 2004 HOH HOH . P 4 HOH E 5 2005 2005 HOH HOH . P 4 HOH E 6 2006 2006 HOH HOH . P 4 HOH E 7 2007 2007 HOH HOH . P 4 HOH E 8 2008 2008 HOH HOH . P 4 HOH E 9 2009 2009 HOH HOH . P 4 HOH E 10 2010 2010 HOH HOH . P 4 HOH E 11 2011 2011 HOH HOH . P 4 HOH E 12 2012 2012 HOH HOH . P 4 HOH E 13 2013 2013 HOH HOH . P 4 HOH E 14 2014 2014 HOH HOH . P 4 HOH E 15 2015 2015 HOH HOH . P 4 HOH E 16 2016 2016 HOH HOH . P 4 HOH E 17 2017 2017 HOH HOH . P 4 HOH E 18 2018 2018 HOH HOH . P 4 HOH E 19 2019 2019 HOH HOH . P 4 HOH E 20 2020 2020 HOH HOH . P 4 HOH E 21 2021 2021 HOH HOH . P 4 HOH E 22 2022 2022 HOH HOH . P 4 HOH E 23 2023 2023 HOH HOH . P 4 HOH E 24 2024 2024 HOH HOH . P 4 HOH E 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 SCA . . . I 2 9.02 -6.626 43.141 0.75 35.73 ? C8 SCA 500 D 1 HETATM 2 N N9 SCA . . . I 2 8.297 -6.337 42.048 0.75 38.13 ? N9 SCA 500 D 1 HETATM 3 C C4 SCA . . . I 2 7.074 -5.984 42.379 0.75 35.14 ? C4 SCA 500 D 1 HETATM 4 C C5 SCA . . . I 2 7.017 -6.055 43.838 0.75 36.58 ? C5 SCA 500 D 1 HETATM 5 N N7 SCA . . . I 2 8.249 -6.46 44.244 0.75 39.13 ? N7 SCA 500 D 1 HETATM 6 N N3 SCA . . . I 2 5.976 -5.627 41.667 0.75 35.53 ? N3 SCA 500 D 1 HETATM 7 C C2 SCA . . . I 2 4.811 -5.341 42.314 0.75 39.03 ? C2 SCA 500 D 1 HETATM 8 N N1 SCA . . . I 2 4.662 -5.401 43.667 0.75 38.81 ? N1 SCA 500 D 1 HETATM 9 C C6 SCA . . . I 2 5.705 -5.747 44.472 0.75 38.16 ? C6 SCA 500 D 1 HETATM 10 N N6 SCA . . . I 2 5.546 -5.798 45.805 0.75 36.85 ? N6 SCA 500 D 1 HETATM 11 C C1' SCA . . . I 2 8.724 -6.389 40.652 0.75 43.95 ? C1' SCA 500 D 1 HETATM 12 C C2' SCA . . . I 2 9.91 -5.5 40.325 0.75 49.2 ? C2' SCA 500 D 1 HETATM 13 O O2' SCA . . . I 2 9.454 -4.216 39.856 0.75 48.53 ? O2' SCA 500 D 1 HETATM 14 C C3' SCA . . . I 2 10.496 -6.274 39.178 0.75 53.36 ? C3' SCA 500 D 1 HETATM 15 O O3' SCA . . . I 2 9.755 -5.859 38.063 0.75 61.96 ? O3' SCA 500 D 1 HETATM 16 C C4' SCA . . . I 2 10.098 -7.734 39.358 0.75 56 ? C4' SCA 500 D 1 HETATM 17 O O4' SCA . . . I 2 9.102 -7.742 40.375 0.75 55.32 ? O4' SCA 500 D 1 HETATM 18 C C5' SCA . . . I 2 11.25 -8.589 39.82 0.75 59.17 ? C5' SCA 500 D 1 HETATM 19 O O5' SCA . . . I 2 11.846 -7.902 40.913 0.75 62.29 ? O5' SCA 500 D 1 HETATM 20 P P1 SCA . . . I 2 13.371 -7.395 40.833 0.75 66.41 ? P1 SCA 500 D 1 HETATM 21 O O11 SCA . . . I 2 13.395 -5.884 40.836 0.75 66.29 ? O11 SCA 500 D 1 HETATM 22 O O12 SCA . . . I 2 14.132 -8.082 39.703 0.75 59.55 ? O12 SCA 500 D 1 HETATM 23 O O6 SCA . . . I 2 13.793 -8.04 42.256 0.75 61.36 ? O6 SCA 500 D 1 HETATM 24 P P2 SCA . . . I 2 14.128 -9.639 42.262 0.75 64.05 ? P2 SCA 500 D 1 HETATM 25 O O21 SCA . . . I 2 15.592 -9.811 41.858 0.75 51.84 ? O21 SCA 500 D 1 HETATM 26 O O22 SCA . . . I 2 13.085 -10.317 41.393 0.75 63.96 ? O22 SCA 500 D 1 HETATM 27 O O7 SCA . . . I 2 13.857 -10.168 43.773 0.75 50.87 ? O7 SCA 500 D 1 HETATM 28 C CPB SCA . . . I 2 12.633 -11.195 43.818 0 98.71 ? CPB SCA 500 D 1 HETATM 29 C CPA SCA . . . I 2 11.388 -10.543 44.419 0 99.84 ? CPA SCA 500 D 1 HETATM 30 C CP7 SCA . . . I 2 11.143 -11.098 45.823 0 100.5 ? CP7 SCA 500 D 1 HETATM 31 C CP9 SCA . . . I 2 10.175 -10.841 43.535 0 98.87 ? CP9 SCA 500 D 1 HETATM 32 C CP8 SCA . . . I 2 11.606 -9.032 44.503 0 99.31 ? CP8 SCA 500 D 1 HETATM 33 O OP3 SCA . . . I 2 10.902 -10.016 46.724 0 101.09 ? OP3 SCA 500 D 1 HETATM 34 C CP6 SCA . . . I 2 9.94 -12.045 45.808 0 100.46 ? CP6 SCA 500 D 1 HETATM 35 O OP2 SCA . . . I 2 9.663 -12.691 44.799 0 100.79 ? OP2 SCA 500 D 1 HETATM 36 N NP2 SCA . . . I 2 9.249 -12.11 46.945 0 98.23 ? NP2 SCA 500 D 1 HETATM 37 C CP5 SCA . . . I 2 8.073 -12.98 47.1 0 96.1 ? CP5 SCA 500 D 1 HETATM 38 C CP4 SCA . . . I 2 6.812 -12.132 47.264 0 95.56 ? CP4 SCA 500 D 1 HETATM 39 C CP3 SCA . . . I 2 5.907 -12.672 48.378 0 95.36 ? CP3 SCA 500 D 1 HETATM 40 O OP1 SCA . . . I 2 5.655 -11.992 49.372 0 95.76 ? OP1 SCA 500 D 1 HETATM 41 N NP1 SCA . . . I 2 5.427 -13.897 48.182 0 92.88 ? NP1 SCA 500 D 1 HETATM 42 C CP2 SCA . . . I 2 4.545 -14.546 49.162 0 92.12 ? CP2 SCA 500 D 1 HETATM 43 C CP1 SCA . . . I 2 4.905 -16.028 49.294 0 90.58 ? CP1 SCA 500 D 1 HETATM 44 P P3 SCA . . . I 2 10.489 -5.484 36.711 0.75 68.41 ? P3 SCA 500 D 1 HETATM 45 O O31 SCA . . . I 2 10.565 -3.961 36.857 0.75 62.54 ? O31 SCA 500 D 1 HETATM 46 O O32 SCA . . . I 2 11.782 -6.29 36.783 0.75 66.55 ? O32 SCA 500 D 1 HETATM 47 O O33 SCA . . . I 2 9.561 -6.004 35.638 0.75 65.43 ? O33 SCA 500 D 1 HETATM 48 S S SCA . . . I 2 3.92 -16.898 50.571 0 89.86 ? S SCA 500 D 1 HETATM 49 C CS1 SCA . . . I 2 3.679 -18.457 49.793 0 85.95 ? CS1 SCA 500 D 1 HETATM 50 O OS1 SCA . . . I 2 2.542 -18.824 49.499 0 84.48 ? OS1 SCA 500 D 1 HETATM 51 C CS2 SCA . . . I 2 4.889 -19.345 49.485 0 81.72 ? CS2 SCA 500 D 1 HETATM 52 C CS3 SCA . . . I 2 4.749 -20.642 49.879 0.75 30.82 ? CS3 SCA 500 D 1 HETATM 53 C CS4 SCA . . . I 2 5.994 -21.454 50.146 0.75 31.61 ? CS4 SCA 500 D 1 HETATM 54 O OS4 SCA . . . I 2 5.967 -22.684 49.986 0.75 30.67 ? OS4 SCA 500 D 1 HETATM 55 O OS5 SCA . . . I 2 7.015 -20.867 50.533 0.75 29.53 ? OS5 SCA 500 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 55 #