data_2BWP
#
_model_server_result.job_id            Qajb1yv8kauGJIskDf5_0A 
_model_server_result.datetime_utc      '2024-10-10 09:31:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bwp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":500}' 
#
_entry.id    2BWP 
#
_exptl.entry_id    2BWP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.209 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BWP 
_cell.length_a            67.998 
_cell.length_b            92.016 
_cell.length_c            248.553 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BWP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,L,M 1 1 
C,D,H,I,J,K,N,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
#
_chem_comp.formula           'C10 H15 N2 O7 P' 
_chem_comp.formula_weight    306.209 
_chem_comp.id                PLG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLG doub 267 n y 
N1 C6 PLG sing 268 n y 
C2 C2A PLG sing 269 n n 
C2 C3 PLG sing 270 n y 
C2A H2A1 PLG sing 271 n n 
C2A H2A2 PLG sing 272 n n 
C2A H2A3 PLG sing 273 n n 
C3 O3 PLG sing 274 n n 
C3 C4 PLG doub 275 n y 
O3 HO3 PLG sing 276 n n 
C4 C4A PLG sing 277 n n 
C4 C5 PLG sing 278 n y 
C4A N PLG sing 279 n n 
C4A H4A1 PLG sing 280 n n 
C4A H4A2 PLG sing 281 n n 
C5 C6 PLG doub 282 n y 
C5 C5A PLG sing 283 n n 
C6 H6 PLG sing 284 n n 
C5A OP4 PLG sing 285 n n 
C5A H5A1 PLG sing 286 n n 
C5A H5A2 PLG sing 287 n n 
OP4 P PLG sing 288 n n 
P OP1 PLG doub 289 n n 
P OP2 PLG sing 290 n n 
P OP3 PLG sing 291 n n 
OP2 HOP2 PLG sing 292 n n 
OP3 HOP3 PLG sing 293 n n 
C O PLG doub 294 n n 
C OXT PLG sing 295 n n 
C CA PLG sing 296 n n 
OXT HXT PLG sing 297 n n 
CA N PLG sing 298 n n 
CA HA2 PLG sing 299 n n 
CA HA1 PLG sing 300 n n 
N H PLG sing 301 n n 
#
_atom_sites.entry_id                     2BWP 
_atom_sites.fract_transf_matrix[1][1]    0.014706 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004023 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLG A 1 500 500 PLG PLG . 
F 3 ACY A 1 600 600 ACY ACY . 
G 2 PLG B 1 500 500 PLG PLG . 
H 2 PLG D 1 500 500 PLG PLG . 
I 3 ACY D 1 600 600 ACY ACY . 
J 2 PLG E 1 500 500 PLG PLG . 
K 3 ACY E 1 600 600 ACY ACY . 
L 4 HOH A 1 2001 2001 HOH HOH . 
L 4 HOH A 2 2002 2002 HOH HOH . 
L 4 HOH A 3 2003 2003 HOH HOH . 
L 4 HOH A 4 2004 2004 HOH HOH . 
L 4 HOH A 5 2005 2005 HOH HOH . 
L 4 HOH A 6 2006 2006 HOH HOH . 
L 4 HOH A 7 2007 2007 HOH HOH . 
L 4 HOH A 8 2008 2008 HOH HOH . 
L 4 HOH A 9 2009 2009 HOH HOH . 
L 4 HOH A 10 2010 2010 HOH HOH . 
L 4 HOH A 11 2011 2011 HOH HOH . 
L 4 HOH A 12 2012 2012 HOH HOH . 
L 4 HOH A 13 2013 2013 HOH HOH . 
L 4 HOH A 14 2014 2014 HOH HOH . 
L 4 HOH A 15 2015 2015 HOH HOH . 
L 4 HOH A 16 2016 2016 HOH HOH . 
L 4 HOH A 17 2017 2017 HOH HOH . 
L 4 HOH A 18 2018 2018 HOH HOH . 
L 4 HOH A 19 2019 2019 HOH HOH . 
L 4 HOH A 20 2020 2020 HOH HOH . 
L 4 HOH A 21 2021 2021 HOH HOH . 
L 4 HOH A 22 2022 2022 HOH HOH . 
L 4 HOH A 23 2023 2023 HOH HOH . 
L 4 HOH A 24 2024 2024 HOH HOH . 
L 4 HOH A 25 2025 2025 HOH HOH . 
L 4 HOH A 26 2026 2026 HOH HOH . 
L 4 HOH A 27 2027 2027 HOH HOH . 
M 4 HOH B 1 2001 2001 HOH HOH . 
M 4 HOH B 2 2002 2002 HOH HOH . 
M 4 HOH B 3 2003 2003 HOH HOH . 
M 4 HOH B 4 2004 2004 HOH HOH . 
M 4 HOH B 5 2005 2005 HOH HOH . 
M 4 HOH B 6 2006 2006 HOH HOH . 
M 4 HOH B 7 2007 2007 HOH HOH . 
M 4 HOH B 8 2008 2008 HOH HOH . 
M 4 HOH B 9 2009 2009 HOH HOH . 
M 4 HOH B 10 2010 2010 HOH HOH . 
M 4 HOH B 11 2011 2011 HOH HOH . 
M 4 HOH B 12 2012 2012 HOH HOH . 
M 4 HOH B 13 2013 2013 HOH HOH . 
M 4 HOH B 14 2014 2014 HOH HOH . 
M 4 HOH B 15 2015 2015 HOH HOH . 
M 4 HOH B 16 2016 2016 HOH HOH . 
M 4 HOH B 17 2017 2017 HOH HOH . 
M 4 HOH B 18 2018 2018 HOH HOH . 
M 4 HOH B 19 2019 2019 HOH HOH . 
M 4 HOH B 20 2020 2020 HOH HOH . 
M 4 HOH B 21 2021 2021 HOH HOH . 
M 4 HOH B 22 2022 2022 HOH HOH . 
M 4 HOH B 23 2023 2023 HOH HOH . 
M 4 HOH B 24 2024 2024 HOH HOH . 
M 4 HOH B 25 2025 2025 HOH HOH . 
M 4 HOH B 26 2026 2026 HOH HOH . 
M 4 HOH B 27 2027 2027 HOH HOH . 
M 4 HOH B 28 2028 2028 HOH HOH . 
M 4 HOH B 29 2029 2029 HOH HOH . 
N 4 HOH D 1 2001 2001 HOH HOH . 
N 4 HOH D 2 2002 2002 HOH HOH . 
N 4 HOH D 3 2003 2003 HOH HOH . 
N 4 HOH D 4 2004 2004 HOH HOH . 
N 4 HOH D 5 2005 2005 HOH HOH . 
N 4 HOH D 6 2006 2006 HOH HOH . 
N 4 HOH D 7 2007 2007 HOH HOH . 
N 4 HOH D 8 2008 2008 HOH HOH . 
N 4 HOH D 9 2009 2009 HOH HOH . 
N 4 HOH D 10 2010 2010 HOH HOH . 
N 4 HOH D 11 2011 2011 HOH HOH . 
N 4 HOH D 12 2012 2012 HOH HOH . 
N 4 HOH D 13 2013 2013 HOH HOH . 
N 4 HOH D 14 2014 2014 HOH HOH . 
N 4 HOH D 15 2015 2015 HOH HOH . 
N 4 HOH D 16 2016 2016 HOH HOH . 
N 4 HOH D 17 2017 2017 HOH HOH . 
N 4 HOH D 18 2018 2018 HOH HOH . 
N 4 HOH D 19 2019 2019 HOH HOH . 
N 4 HOH D 20 2020 2020 HOH HOH . 
N 4 HOH D 21 2021 2021 HOH HOH . 
N 4 HOH D 22 2022 2022 HOH HOH . 
N 4 HOH D 23 2023 2023 HOH HOH . 
N 4 HOH D 24 2024 2024 HOH HOH . 
N 4 HOH D 25 2025 2025 HOH HOH . 
N 4 HOH D 26 2026 2026 HOH HOH . 
N 4 HOH D 27 2027 2027 HOH HOH . 
N 4 HOH D 28 2028 2028 HOH HOH . 
N 4 HOH D 29 2029 2029 HOH HOH . 
N 4 HOH D 30 2030 2030 HOH HOH . 
N 4 HOH D 31 2031 2031 HOH HOH . 
N 4 HOH D 32 2032 2032 HOH HOH . 
O 4 HOH E 1 2001 2001 HOH HOH . 
O 4 HOH E 2 2002 2002 HOH HOH . 
O 4 HOH E 3 2003 2003 HOH HOH . 
O 4 HOH E 4 2004 2004 HOH HOH . 
O 4 HOH E 5 2005 2005 HOH HOH . 
O 4 HOH E 6 2006 2006 HOH HOH . 
O 4 HOH E 7 2007 2007 HOH HOH . 
O 4 HOH E 8 2008 2008 HOH HOH . 
O 4 HOH E 9 2009 2009 HOH HOH . 
O 4 HOH E 10 2010 2010 HOH HOH . 
O 4 HOH E 11 2011 2011 HOH HOH . 
O 4 HOH E 12 2012 2012 HOH HOH . 
O 4 HOH E 13 2013 2013 HOH HOH . 
O 4 HOH E 14 2014 2014 HOH HOH . 
O 4 HOH E 15 2015 2015 HOH HOH . 
O 4 HOH E 16 2016 2016 HOH HOH . 
O 4 HOH E 17 2017 2017 HOH HOH . 
O 4 HOH E 18 2018 2018 HOH HOH . 
O 4 HOH E 19 2019 2019 HOH HOH . 
O 4 HOH E 20 2020 2020 HOH HOH . 
O 4 HOH E 21 2021 2021 HOH HOH . 
O 4 HOH E 22 2022 2022 HOH HOH . 
O 4 HOH E 23 2023 2023 HOH HOH . 
O 4 HOH E 24 2024 2024 HOH HOH . 
O 4 HOH E 25 2025 2025 HOH HOH . 
O 4 HOH E 26 2026 2026 HOH HOH . 
O 4 HOH E 27 2027 2027 HOH HOH . 
O 4 HOH E 28 2028 2028 HOH HOH . 
O 4 HOH E 29 2029 2029 HOH HOH . 
O 4 HOH E 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLG . . . G 2 22.787 15.018 34.523 1 48.17 ? N1 PLG 500 B 1 
HETATM 2 C C2 PLG . . . G 2 22.029 15.97 35.129 1 47.82 ? C2 PLG 500 B 1 
HETATM 3 C C2A PLG . . . G 2 21.872 15.843 36.634 1 47.81 ? C2A PLG 500 B 1 
HETATM 4 C C3 PLG . . . G 2 21.411 17.04 34.384 1 51.19 ? C3 PLG 500 B 1 
HETATM 5 O O3 PLG . . . G 2 20.654 18.028 35.031 1 45.53 ? O3 PLG 500 B 1 
HETATM 6 C C4 PLG . . . G 2 21.587 17.078 32.959 1 48.53 ? C4 PLG 500 B 1 
HETATM 7 C C4A PLG . . . G 2 20.952 18.213 32.081 1 52.63 ? C4A PLG 500 B 1 
HETATM 8 C C5 PLG . . . G 2 22.38 16.019 32.384 1 48.86 ? C5 PLG 500 B 1 
HETATM 9 C C6 PLG . . . G 2 22.954 15.015 33.199 1 48.84 ? C6 PLG 500 B 1 
HETATM 10 C C5A PLG . . . G 2 22.729 15.865 30.898 1 47.88 ? C5A PLG 500 B 1 
HETATM 11 O OP4 PLG . . . G 2 23.71 16.889 30.486 1 43.77 ? OP4 PLG 500 B 1 
HETATM 12 P P PLG . . . G 2 24.04 17.19 28.916 1 38.97 ? P PLG 500 B 1 
HETATM 13 O OP1 PLG . . . G 2 25.644 17.191 28.832 1 27.27 ? OP1 PLG 500 B 1 
HETATM 14 O OP2 PLG . . . G 2 23.64 18.723 28.686 1 30.67 ? OP2 PLG 500 B 1 
HETATM 15 O OP3 PLG . . . G 2 23.296 16.289 27.961 1 29.05 ? OP3 PLG 500 B 1 
HETATM 16 C C PLG . . . G 2 19.247 20.943 33.189 0.4 56.79 ? C PLG 500 B 1 
HETATM 17 O O PLG . . . G 2 20.297 21.016 33.85 0.4 57.24 ? O PLG 500 B 1 
HETATM 18 O OXT PLG . . . G 2 18.222 21.635 33.356 0.4 52.15 ? OXT PLG 500 B 1 
HETATM 19 C CA PLG . . . G 2 19.216 19.905 32.074 0.4 58.09 ? CA PLG 500 B 1 
HETATM 20 N N PLG . . . G 2 19.611 18.598 32.615 1 63.57 ? N PLG 500 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           20 
#