data_2BWT
#
_model_server_result.job_id            KWFElNo-BwA0QnOCLTltqA 
_model_server_result.datetime_utc      '2024-11-05 01:15:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bwt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1444}' 
#
_entry.id    2BWT 
#
_exptl.entry_id    2BWT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2BWT 
_cell.length_a            137.588 
_cell.length_b            137.588 
_cell.length_c            231.948 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BWT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 68.794 68.794 115.974 
3 'crystal symmetry operation' 7_455 y-1/2,x+1/2,-z+1/2 0 1 0 1 0 0 0 0 -1 -68.794 68.794 115.974 
4 'crystal symmetry operation' 10_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 137.588 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 271 A ASP 271 1_555 B MN MN . A MN 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc2 A NE2 HIS 354 A HIS 354 1_555 B MN MN . A MN 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc3 A OE2 GLU 383 A GLU 383 1_555 B MN MN . A MN 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc4 A OE2 GLU 406 A GLU 406 1_555 B MN MN . A MN 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc5 C MG MG . A MG 1442 1_555 F O HOH . A HOH 2022 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc6 C MG MG . A MG 1442 1_555 F O HOH . A HOH 2023 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc7 C MG MG . A MG 1442 1_555 F O HOH . A HOH 2024 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc8 C MG MG . A MG 1442 1_555 F O HOH . A HOH 2034 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc9 C MG MG . A MG 1442 1_555 F O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? 
metalc ? metalc10 C MG MG . A MG 1442 1_555 F O HOH . A HOH 2036 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 254 n n 
C1 H11 MPD sing 255 n n 
C1 H12 MPD sing 256 n n 
C1 H13 MPD sing 257 n n 
C2 O2 MPD sing 258 n n 
C2 CM MPD sing 259 n n 
C2 C3 MPD sing 260 n n 
O2 HO2 MPD sing 261 n n 
CM HM1 MPD sing 262 n n 
CM HM2 MPD sing 263 n n 
CM HM3 MPD sing 264 n n 
C3 C4 MPD sing 265 n n 
C3 H31 MPD sing 266 n n 
C3 H32 MPD sing 267 n n 
C4 O4 MPD sing 268 n n 
C4 C5 MPD sing 269 n n 
C4 H4 MPD sing 270 n n 
O4 HO4 MPD sing 271 n n 
C5 H51 MPD sing 272 n n 
C5 H52 MPD sing 273 n n 
C5 H53 MPD sing 274 n n 
#
_atom_sites.entry_id                     2BWT 
_atom_sites.fract_transf_matrix[1][1]    0.007268 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007268 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004311 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 1441 1441 MN MN . 
C 3 MG A 1 1442 1442 MG MG . 
D 4 FLC A 1 1443 1443 FLC FLC . 
E 5 MPD A 1 1444 1444 MPD MPD . 
F 6 HOH A 1 2001 2001 HOH HOH . 
F 6 HOH A 2 2002 2002 HOH HOH . 
F 6 HOH A 3 2003 2003 HOH HOH . 
F 6 HOH A 4 2004 2004 HOH HOH . 
F 6 HOH A 5 2005 2005 HOH HOH . 
F 6 HOH A 6 2006 2006 HOH HOH . 
F 6 HOH A 7 2007 2007 HOH HOH . 
F 6 HOH A 8 2008 2008 HOH HOH . 
F 6 HOH A 9 2009 2009 HOH HOH . 
F 6 HOH A 10 2010 2010 HOH HOH . 
F 6 HOH A 11 2011 2011 HOH HOH . 
F 6 HOH A 12 2012 2012 HOH HOH . 
F 6 HOH A 13 2013 2013 HOH HOH . 
F 6 HOH A 14 2014 2014 HOH HOH . 
F 6 HOH A 15 2015 2015 HOH HOH . 
F 6 HOH A 16 2016 2016 HOH HOH . 
F 6 HOH A 17 2017 2017 HOH HOH . 
F 6 HOH A 18 2018 2018 HOH HOH . 
F 6 HOH A 19 2019 2019 HOH HOH . 
F 6 HOH A 20 2020 2020 HOH HOH . 
F 6 HOH A 21 2021 2021 HOH HOH . 
F 6 HOH A 22 2022 2022 HOH HOH . 
F 6 HOH A 23 2023 2023 HOH HOH . 
F 6 HOH A 24 2024 2024 HOH HOH . 
F 6 HOH A 25 2025 2025 HOH HOH . 
F 6 HOH A 26 2026 2026 HOH HOH . 
F 6 HOH A 27 2027 2027 HOH HOH . 
F 6 HOH A 28 2028 2028 HOH HOH . 
F 6 HOH A 29 2029 2029 HOH HOH . 
F 6 HOH A 30 2030 2030 HOH HOH . 
F 6 HOH A 31 2031 2031 HOH HOH . 
F 6 HOH A 32 2032 2032 HOH HOH . 
F 6 HOH A 33 2033 2033 HOH HOH . 
F 6 HOH A 34 2034 2034 HOH HOH . 
F 6 HOH A 35 2035 2035 HOH HOH . 
F 6 HOH A 36 2036 2036 HOH HOH . 
F 6 HOH A 37 2037 2037 HOH HOH . 
F 6 HOH A 38 2038 2038 HOH HOH . 
F 6 HOH A 39 2039 2039 HOH HOH . 
F 6 HOH A 40 2040 2040 HOH HOH . 
F 6 HOH A 41 2041 2041 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . E 5 26.771 57.698 40.942 0.8 81.09 ? C1 MPD 1444 A 1 
HETATM 2 C C2 MPD . . . E 5 27.941 57.531 41.897 0.8 81.37 ? C2 MPD 1444 A 1 
HETATM 3 O O2 MPD . . . E 5 28.872 56.621 41.257 0.8 80.2 ? O2 MPD 1444 A 1 
HETATM 4 C CM MPD . . . E 5 27.439 56.862 43.177 0.8 81.47 ? CM MPD 1444 A 1 
HETATM 5 C C3 MPD . . . E 5 28.624 58.875 42.245 0.8 81.56 ? C3 MPD 1444 A 1 
HETATM 6 C C4 MPD . . . E 5 28.926 59.842 41.078 0.8 80.52 ? C4 MPD 1444 A 1 
HETATM 7 O O4 MPD . . . E 5 27.989 60.897 41.004 0.8 79.52 ? O4 MPD 1444 A 1 
HETATM 8 C C5 MPD . . . E 5 30.282 60.532 41.209 0.8 79.76 ? C5 MPD 1444 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           8 
#