data_2BXD # _model_server_result.job_id 22OfZndRlcddc6lsm2qDaQ _model_server_result.datetime_utc '2024-11-22 12:09:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bxd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2001}' # _entry.id 2BXD # _exptl.entry_id 2BXD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.328 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description R-WARFARIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 81.14 _cell.angle_beta 90.53 _cell.angle_gamma 64.79 _cell.entry_id 2BXD _cell.length_a 55.022 _cell.length_b 55.358 _cell.length_c 119.591 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BXD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf18 B SG CYS 53 B CYS 53 1_555 B SG CYS 62 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf19 B SG CYS 75 B CYS 75 1_555 B SG CYS 91 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf20 B SG CYS 90 B CYS 90 1_555 B SG CYS 101 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf21 B SG CYS 124 B CYS 124 1_555 B SG CYS 169 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf22 B SG CYS 168 B CYS 168 1_555 B SG CYS 177 B CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf23 B SG CYS 200 B CYS 200 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf24 B SG CYS 245 B CYS 245 1_555 B SG CYS 253 B CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf25 B SG CYS 265 B CYS 265 1_555 B SG CYS 279 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf26 B SG CYS 278 B CYS 278 1_555 B SG CYS 289 B CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf27 B SG CYS 316 B CYS 316 1_555 B SG CYS 361 B CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf28 B SG CYS 360 B CYS 360 1_555 B SG CYS 369 B CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf29 B SG CYS 392 B CYS 392 1_555 B SG CYS 438 B CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf30 B SG CYS 437 B CYS 437 1_555 B SG CYS 448 B CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf31 B SG CYS 461 B CYS 461 1_555 B SG CYS 477 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf32 B SG CYS 476 B CYS 476 1_555 B SG CYS 487 B CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf33 B SG CYS 514 B CYS 514 1_555 B SG CYS 559 B CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf34 B SG CYS 558 B CYS 558 1_555 B SG CYS 567 B CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? # _chem_comp.formula 'C19 H16 O4' _chem_comp.formula_weight 308.328 _chem_comp.id RWF _chem_comp.mon_nstd_flag . _chem_comp.name R-WARFARIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C14 RWF sing 275 n y C1 C15 RWF doub 276 n y C1 C19 RWF sing 277 n y C2 C3 RWF sing 278 n n C2 C6 RWF sing 279 n n C2 C13 RWF sing 280 n n C2 H2 RWF sing 281 n n C3 C4 RWF sing 282 n n C3 H3C1 RWF sing 283 n n C3 H3C2 RWF sing 284 n n C4 C5 RWF sing 285 n n C4 O3 RWF doub 286 n n C5 H5C1 RWF sing 287 n n C5 H5C2 RWF sing 288 n n C5 H5C3 RWF sing 289 n n C6 C7 RWF doub 290 n y C6 C12 RWF sing 291 n y C7 C8 RWF sing 292 n y C7 H7 RWF sing 293 n n C8 C9 RWF doub 294 n y C8 H8 RWF sing 295 n n C9 C10 RWF sing 296 n y C9 H9 RWF sing 297 n n C10 C12 RWF doub 298 n y C10 H10 RWF sing 299 n n C11 C13 RWF sing 300 n y C11 O1 RWF sing 301 n y C11 O2 RWF doub 302 n n C12 H12 RWF sing 303 n n C13 C14 RWF doub 304 n y C14 O4 RWF sing 305 n n C15 C16 RWF sing 306 n y C15 H15 RWF sing 307 n n C16 C17 RWF doub 308 n y C16 H16 RWF sing 309 n n C17 C18 RWF sing 310 n y C17 H17 RWF sing 311 n n C18 C19 RWF doub 312 n y C18 H18 RWF sing 313 n n C19 O1 RWF sing 314 n y O4 H4 RWF sing 315 n n # _atom_sites.entry_id 2BXD _atom_sites.fract_transf_matrix[1][1] 0.018175 _atom_sites.fract_transf_matrix[1][2] -0.008556 _atom_sites.fract_transf_matrix[1][3] 0.001688 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019966 _atom_sites.fract_transf_matrix[2][3] -0.00354 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008493 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RWF A 1 2001 2001 RWF RWF . D 2 RWF B 1 2001 2001 RWF RWF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RWF . . . D 2 41.039 36.363 49.373 1 115.72 ? C1 RWF 2001 B 1 HETATM 2 C C2 RWF . . . D 2 42.917 36.483 52.883 1 111.55 ? C2 RWF 2001 B 1 HETATM 3 C C3 RWF . . . D 2 44.051 35.463 52.578 1 112.56 ? C3 RWF 2001 B 1 HETATM 4 C C4 RWF . . . D 2 45.169 35.488 53.59 1 113.59 ? C4 RWF 2001 B 1 HETATM 5 C C5 RWF . . . D 2 46.044 34.28 53.847 1 114.07 ? C5 RWF 2001 B 1 HETATM 6 C C6 RWF . . . D 2 41.953 35.966 53.973 1 110.09 ? C6 RWF 2001 B 1 HETATM 7 C C7 RWF . . . D 2 41.458 36.83 54.988 1 109.11 ? C7 RWF 2001 B 1 HETATM 8 C C8 RWF . . . D 2 40.569 36.347 55.983 1 108.17 ? C8 RWF 2001 B 1 HETATM 9 C C9 RWF . . . D 2 40.164 35.018 55.983 1 107.52 ? C9 RWF 2001 B 1 HETATM 10 C C10 RWF . . . D 2 40.63 34.168 55.011 1 108.13 ? C10 RWF 2001 B 1 HETATM 11 C C11 RWF . . . D 2 41.963 38.28 51.333 1 113.12 ? C11 RWF 2001 B 1 HETATM 12 C C12 RWF . . . D 2 41.515 34.624 54.01 1 108.91 ? C12 RWF 2001 B 1 HETATM 13 C C13 RWF . . . D 2 42.188 36.851 51.573 1 112.92 ? C13 RWF 2001 B 1 HETATM 14 C C14 RWF . . . D 2 41.744 35.927 50.61 1 114.36 ? C14 RWF 2001 B 1 HETATM 15 C C15 RWF . . . D 2 40.551 35.496 48.339 1 116.05 ? C15 RWF 2001 B 1 HETATM 16 C C16 RWF . . . D 2 39.9 36.033 47.211 1 116.54 ? C16 RWF 2001 B 1 HETATM 17 C C17 RWF . . . D 2 39.733 37.426 47.08 1 116.66 ? C17 RWF 2001 B 1 HETATM 18 C C18 RWF . . . D 2 40.2 38.302 48.065 1 116.78 ? C18 RWF 2001 B 1 HETATM 19 C C19 RWF . . . D 2 40.858 37.766 49.202 1 116.15 ? C19 RWF 2001 B 1 HETATM 20 O O1 RWF . . . D 2 41.305 38.68 50.169 1 114.72 ? O1 RWF 2001 B 1 HETATM 21 O O2 RWF . . . D 2 42.295 39.194 52.071 1 112.36 ? O2 RWF 2001 B 1 HETATM 22 O O3 RWF . . . D 2 45.352 36.679 54.291 1 114.93 ? O3 RWF 2001 B 1 HETATM 23 O O4 RWF . . . D 2 41.883 34.578 50.703 1 113.57 ? O4 RWF 2001 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #