data_2BXM # _model_server_result.job_id W1j7v9sXVwpYzJA94yMXrA _model_server_result.datetime_utc '2024-11-13 02:21:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 2BXM # _exptl.entry_id 2BXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.18 _cell.angle_gamma 90 _cell.entry_id 2BXM _cell.length_a 188.141 _cell.length_b 38.821 _cell.length_c 96.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 280 n n C1 O2 MYR sing 281 n n C1 C2 MYR sing 282 n n O2 HO2 MYR sing 283 n n C2 C3 MYR sing 284 n n C2 H21 MYR sing 285 n n C2 H22 MYR sing 286 n n C3 C4 MYR sing 287 n n C3 H31 MYR sing 288 n n C3 H32 MYR sing 289 n n C4 C5 MYR sing 290 n n C4 H41 MYR sing 291 n n C4 H42 MYR sing 292 n n C5 C6 MYR sing 293 n n C5 H51 MYR sing 294 n n C5 H52 MYR sing 295 n n C6 C7 MYR sing 296 n n C6 H61 MYR sing 297 n n C6 H62 MYR sing 298 n n C7 C8 MYR sing 299 n n C7 H71 MYR sing 300 n n C7 H72 MYR sing 301 n n C8 C9 MYR sing 302 n n C8 H81 MYR sing 303 n n C8 H82 MYR sing 304 n n C9 C10 MYR sing 305 n n C9 H91 MYR sing 306 n n C9 H92 MYR sing 307 n n C10 C11 MYR sing 308 n n C10 H101 MYR sing 309 n n C10 H102 MYR sing 310 n n C11 C12 MYR sing 311 n n C11 H111 MYR sing 312 n n C11 H112 MYR sing 313 n n C12 C13 MYR sing 314 n n C12 H121 MYR sing 315 n n C12 H122 MYR sing 316 n n C13 C14 MYR sing 317 n n C13 H131 MYR sing 318 n n C13 H132 MYR sing 319 n n C14 H141 MYR sing 320 n n C14 H142 MYR sing 321 n n C14 H143 MYR sing 322 n n # _atom_sites.entry_id 2BXM _atom_sites.fract_transf_matrix[1][1] 0.005315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001442 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 2 MYR A 1 1006 1006 MYR MYR . H 2 MYR A 1 1007 1007 MYR MYR . I 3 IMN A 1 2001 2001 IMN IMN . J 3 IMN A 1 2002 2002 IMN IMN . K 4 HOH A 1 1998 1998 HOH HOH . K 4 HOH A 2 1999 1999 HOH HOH . K 4 HOH A 3 2003 2003 HOH HOH . K 4 HOH A 4 2004 2004 HOH HOH . K 4 HOH A 5 2005 2005 HOH HOH . K 4 HOH A 6 2006 2006 HOH HOH . K 4 HOH A 7 2007 2007 HOH HOH . K 4 HOH A 8 2008 2008 HOH HOH . K 4 HOH A 9 2009 2009 HOH HOH . K 4 HOH A 10 2010 2010 HOH HOH . K 4 HOH A 11 2011 2011 HOH HOH . K 4 HOH A 12 2012 2012 HOH HOH . K 4 HOH A 13 2013 2013 HOH HOH . K 4 HOH A 14 2014 2014 HOH HOH . K 4 HOH A 15 2015 2015 HOH HOH . K 4 HOH A 16 2016 2016 HOH HOH . K 4 HOH A 17 2017 2017 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . F 2 1.502 12.347 38.014 1 81.01 ? C1 MYR 1005 A 1 HETATM 2 O O1 MYR . . . F 2 0.369 12.503 38.522 1 82.74 ? O1 MYR 1005 A 1 HETATM 3 O O2 MYR . . . F 2 2.32 13.287 37.91 1 81.95 ? O2 MYR 1005 A 1 HETATM 4 C C2 MYR . . . F 2 1.923 10.965 37.503 1 79.4 ? C2 MYR 1005 A 1 HETATM 5 C C3 MYR . . . F 2 0.725 10.017 37.393 1 76.43 ? C3 MYR 1005 A 1 HETATM 6 C C4 MYR . . . F 2 1.152 8.786 38.165 1 74.52 ? C4 MYR 1005 A 1 HETATM 7 C C5 MYR . . . F 2 -0.042 7.915 38.506 1 73.24 ? C5 MYR 1005 A 1 HETATM 8 C C6 MYR . . . F 2 0.381 6.542 38.994 1 70.5 ? C6 MYR 1005 A 1 HETATM 9 C C7 MYR . . . F 2 -0.803 5.592 39.014 1 70.69 ? C7 MYR 1005 A 1 HETATM 10 C C8 MYR . . . F 2 -0.89 4.856 40.337 1 70.28 ? C8 MYR 1005 A 1 HETATM 11 C C9 MYR . . . F 2 -2.316 4.455 40.659 1 70.82 ? C9 MYR 1005 A 1 HETATM 12 C C10 MYR . . . F 2 -2.381 3.017 41.162 1 72.08 ? C10 MYR 1005 A 1 HETATM 13 C C11 MYR . . . F 2 -3.821 2.537 41.321 1 71.99 ? C11 MYR 1005 A 1 HETATM 14 C C12 MYR . . . F 2 -3.912 1.011 41.315 1 72.39 ? C12 MYR 1005 A 1 HETATM 15 C C13 MYR . . . F 2 -4.971 0.514 40.328 1 72.74 ? C13 MYR 1005 A 1 HETATM 16 C C14 MYR . . . F 2 -4.899 -0.991 40.158 1 70.83 ? C14 MYR 1005 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 16 #