data_2BXN # _model_server_result.job_id GF2K8trMAT3r4XI23OGvbA _model_server_result.datetime_utc '2024-11-04 20:03:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2001}' # _entry.id 2BXN # _exptl.entry_id 2BXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 1139.762 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[5-[(3-CARBOXY-2,4,6-TRIIODO-PHENYL)CARBAMOYL]PENTANOYLAMINO]-2,4,6-TRIIODO-BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.09 _cell.angle_gamma 90 _cell.entry_id 2BXN _cell.length_a 188.23 _cell.length_b 38.81 _cell.length_c 95.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H14 I6 N2 O6' _chem_comp.formula_weight 1139.762 _chem_comp.id IDB _chem_comp.mon_nstd_flag . _chem_comp.name '3-[5-[(3-CARBOXY-2,4,6-TRIIODO-PHENYL)CARBAMOYL]PENTANOYLAMINO]-2,4,6-TRIIODO-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "3,3'-[(1,6-DIOXOHEXANE-1,6-DIYL)DIIMINO]BIS(2,4,6-TRIIODOBENZOIC ACID)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag I1 C2 IDB sing 152 n n I2 C4 IDB sing 153 n n I3 C6 IDB sing 154 n n O1 C7 IDB doub 155 n n O2 C9 IDB sing 156 n n O2 H2 IDB sing 157 n n O3 C9 IDB doub 158 n n N1 C3 IDB sing 159 n n N1 C7 IDB sing 160 n n N1 H1 IDB sing 161 n n C1 C2 IDB doub 162 n y C1 C6 IDB sing 163 n y C1 C9 IDB sing 164 n n C2 C3 IDB sing 165 n y C3 C4 IDB doub 166 n y C4 C5 IDB sing 167 n y C5 C6 IDB doub 168 n y C5 H5 IDB sing 169 n n C7 C8 IDB sing 170 n n C8 C10 IDB sing 171 n n C8 H8C1 IDB sing 172 n n C8 H8C2 IDB sing 173 n n C10 C11 IDB sing 174 n n C10 H101 IDB sing 175 n n C10 H102 IDB sing 176 n n C11 C19 IDB sing 177 n n C11 H111 IDB sing 178 n n C11 H112 IDB sing 179 n n I4 C13 IDB sing 180 n n I5 C15 IDB sing 181 n n I6 C17 IDB sing 182 n n O4 C18 IDB doub 183 n n O5 C20 IDB sing 184 n n O5 HA IDB sing 185 n n O6 C20 IDB doub 186 n n N2 C14 IDB sing 187 n n N2 C18 IDB sing 188 n n N2 HB IDB sing 189 n n C12 C13 IDB doub 190 n y C12 C17 IDB sing 191 n y C12 C20 IDB sing 192 n n C13 C14 IDB sing 193 n y C14 C15 IDB doub 194 n y C15 C16 IDB sing 195 n y C16 C17 IDB doub 196 n y C16 H16 IDB sing 197 n n C18 C19 IDB sing 198 n n C19 H191 IDB sing 199 n n C19 H192 IDB sing 200 n n # _atom_sites.entry_id 2BXN _atom_sites.fract_transf_matrix[1][1] 0.005313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001432 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025767 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010828 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 1001 1001 MYR MYR . C 2 MYR A 1 1002 1002 MYR MYR . D 2 MYR A 1 1003 1003 MYR MYR . E 2 MYR A 1 1004 1004 MYR MYR . F 2 MYR A 1 1005 1005 MYR MYR . G 2 MYR A 1 1006 1006 MYR MYR . H 3 IDB A 1 2001 2001 IDB IDB . I 3 IDB A 1 2002 2002 IDB IDB . J 4 HOH A 1 1998 1998 HOH HOH . J 4 HOH A 2 1999 1999 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . J 4 HOH A 20 2020 2020 HOH HOH . J 4 HOH A 21 2021 2021 HOH HOH . J 4 HOH A 22 2022 2022 HOH HOH . J 4 HOH A 23 2023 2023 HOH HOH . J 4 HOH A 24 2024 2024 HOH HOH . J 4 HOH A 25 2025 2025 HOH HOH . J 4 HOH A 26 2026 2026 HOH HOH . J 4 HOH A 27 2027 2027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 I I1 IDB . . . H 3 24.496 8.25 12.578 1 168.85 ? I1 IDB 2001 A 1 HETATM 2 I I2 IDB . . . H 3 28.761 9.512 8.204 1 175.51 ? I2 IDB 2001 A 1 HETATM 3 I I3 IDB . . . H 3 25.85 4.184 8.158 1 168.13 ? I3 IDB 2001 A 1 HETATM 4 O O1 IDB . . . H 3 27.006 9.895 13.011 1 171.36 ? O1 IDB 2001 A 1 HETATM 5 O O2 IDB . . . H 3 23.285 5.483 10.321 1 168.72 ? O2 IDB 2001 A 1 HETATM 6 O O3 IDB . . . H 3 24.776 4.826 11.839 1 168.54 ? O3 IDB 2001 A 1 HETATM 7 N N1 IDB . . . H 3 26.934 10.021 10.742 1 170.24 ? N1 IDB 2001 A 1 HETATM 8 C C1 IDB . . . H 3 25.435 6.459 10.273 1 168.63 ? C1 IDB 2001 A 1 HETATM 9 C C2 IDB . . . H 3 25.658 7.756 10.862 1 169.11 ? C2 IDB 2001 A 1 HETATM 10 C C3 IDB . . . H 3 26.632 8.668 10.273 1 170.24 ? C3 IDB 2001 A 1 HETATM 11 C C4 IDB . . . H 3 27.351 8.239 9.117 1 170.87 ? C4 IDB 2001 A 1 HETATM 12 C C5 IDB . . . H 3 27.14 6.959 8.521 1 169.96 ? C5 IDB 2001 A 1 HETATM 13 C C6 IDB . . . H 3 26.188 6.073 9.086 1 168.67 ? C6 IDB 2001 A 1 HETATM 14 C C7 IDB . . . H 3 27.1 10.555 11.989 1 170.68 ? C7 IDB 2001 A 1 HETATM 15 C C8 IDB . . . H 3 27.408 12.048 12.007 1 170.69 ? C8 IDB 2001 A 1 HETATM 16 C C9 IDB . . . H 3 24.411 5.497 10.869 1 168.6 ? C9 IDB 2001 A 1 HETATM 17 C C10 IDB . . . H 3 27.845 12.583 10.653 1 171.15 ? C10 IDB 2001 A 1 HETATM 18 C C11 IDB . . . H 3 28.309 14.039 10.651 1 172.09 ? C11 IDB 2001 A 1 HETATM 19 I I4 IDB . . . H 3 32.328 13.35 11.949 1 185.86 ? I4 IDB 2001 A 1 HETATM 20 I I5 IDB . . . H 3 32.333 17.009 6.992 1 182.38 ? I5 IDB 2001 A 1 HETATM 21 I I6 IDB . . . H 3 37.528 15.164 9.298 1 183.46 ? I6 IDB 2001 A 1 HETATM 22 O O4 IDB . . . H 3 30.729 13.137 8.604 1 174.54 ? O4 IDB 2001 A 1 HETATM 23 O O5 IDB . . . H 3 35.923 12.461 11.141 1 178.4 ? O5 IDB 2001 A 1 HETATM 24 O O6 IDB . . . H 3 35.762 14.187 12.542 1 178.87 ? O6 IDB 2001 A 1 HETATM 25 N N2 IDB . . . H 3 31.131 15.187 9.517 1 177.48 ? N2 IDB 2001 A 1 HETATM 26 C C12 IDB . . . H 3 34.753 14.408 10.423 1 180.82 ? C12 IDB 2001 A 1 HETATM 27 C C13 IDB . . . H 3 33.327 14.432 10.443 1 181.09 ? C13 IDB 2001 A 1 HETATM 28 C C14 IDB . . . H 3 32.581 15.172 9.471 1 180.35 ? C14 IDB 2001 A 1 HETATM 29 C C15 IDB . . . H 3 33.295 15.892 8.467 1 180.54 ? C15 IDB 2001 A 1 HETATM 30 C C16 IDB . . . H 3 34.71 15.889 8.418 1 180.95 ? C16 IDB 2001 A 1 HETATM 31 C C17 IDB . . . H 3 35.434 15.155 9.385 1 180.95 ? C17 IDB 2001 A 1 HETATM 32 C C18 IDB . . . H 3 30.304 14.184 9.09 1 175.27 ? C18 IDB 2001 A 1 HETATM 33 C C19 IDB . . . H 3 28.829 14.452 9.271 1 173.68 ? C19 IDB 2001 A 1 HETATM 34 C C20 IDB . . . H 3 35.553 13.616 11.467 1 179.36 ? C20 IDB 2001 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #