data_2BXU # _model_server_result.job_id mxuDXslS3XI_2INiINmj_A _model_server_result.datetime_utc '2024-11-21 17:57:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1246}' # _entry.id 2BXU # _exptl.entry_id 2BXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.948 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(2-{[(6-AMINO-2-METHYLPYRIDIN-3-YL)METHYL]AMINO}ETHYL)-6-CHLORO-3-[(2,2-DIFLUORO-2-PYRIDIN-2-YLETHYL)AMINO]-1,4-DIHYDROPYRAZIN-2-OL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.35 _cell.angle_gamma 90 _cell.entry_id 2BXU _cell.length_a 70.505 _cell.length_b 71.917 _cell.length_c 72.522 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 H CYS 42 1_555 A SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 119 H CYS 122 1_555 C SG CYS 9 L CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 173 H CYS 168 1_555 A SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 201 H CYS 191 1_555 A SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 B C GLU 9 I GLU 17 1_555 B N TYS 10 I TYS 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 B C TYS 10 I TYS 18 1_555 B N LEU 11 I LEU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C20 H30 Cl F2 N7 O' _chem_comp.formula_weight 457.948 _chem_comp.id C1D _chem_comp.mon_nstd_flag . _chem_comp.name 1-(2-{[(6-AMINO-2-METHYLPYRIDIN-3-YL)METHYL]AMINO}ETHYL)-6-CHLORO-3-[(2,2-DIFLUORO-2-PYRIDIN-2-YLETHYL)AMINO]-1,4-DIHYDROPYRAZIN-2-OL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 C1D sing 70 n y C1 C6 C1D doub 71 n y C1 H1 C1D sing 72 n n N2 C3 C1D doub 73 n y C3 C4 C1D sing 74 n y C3 C11 C1D sing 75 n n C4 C5 C1D doub 76 n y C4 H4 C1D sing 77 n n C5 C6 C1D sing 78 n y C5 H5 C1D sing 79 n n C6 H6 C1D sing 80 n n C11 C12 C1D sing 81 n n C11 F13 C1D sing 82 n n C11 F14 C1D sing 83 n n C12 N15 C1D sing 84 n n C12 H121 C1D sing 85 n n C12 H122 C1D sing 86 n n N15 C18 C1D sing 87 n n N15 H15 C1D sing 88 n n C18 C19 C1D sing 89 n n C18 N23 C1D doub 90 n n C19 N20 C1D sing 91 n n C19 O42 C1D sing 92 n n C19 H119 C1D sing 93 n n N20 C21 C1D sing 94 n n N20 C24 C1D sing 95 n n C21 C22 C1D doub 96 n n C21 CL43 C1D sing 97 n n C22 N23 C1D sing 98 n n C22 H22 C1D sing 99 n n C24 C25 C1D sing 100 n n C24 H241 C1D sing 101 n n C24 H242 C1D sing 102 n n C25 N28 C1D sing 103 n n C25 H251 C1D sing 104 n n C25 H252 C1D sing 105 n n N28 C29 C1D sing 106 n n N28 H28 C1D sing 107 n n C29 C30 C1D sing 108 n n C29 H291 C1D sing 109 n n C29 H292 C1D sing 110 n n C30 C33 C1D sing 111 n n C30 C37 C1D sing 112 n n C30 H330 C1D sing 113 n n C33 C34 C1D sing 114 n n C33 H33 C1D sing 115 n n C33 H331 C1D sing 116 n n C34 C35 C1D sing 117 n n C34 H34 C1D sing 118 n n C34 H341 C1D sing 119 n n C2 C37 C1D sing 120 n n C2 H2C1 C1D sing 121 n n C2 H2C2 C1D sing 122 n n C2 H2C3 C1D sing 123 n n C35 N6 C1D sing 124 n n C35 N29 C1D sing 125 n n C35 H335 C1D sing 126 n n C37 N29 C1D sing 127 n n C37 H337 C1D sing 128 n n O42 H42 C1D sing 129 n n N6 H6N1 C1D sing 130 n n N6 H6N2 C1D sing 131 n n HN1 N29 C1D sing 132 n n # _atom_sites.entry_id 2BXU _atom_sites.fract_transf_matrix[1][1] 0.014183 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00259 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 C1D H 1 1246 1246 C1D C1D . E 5 HOH H 1 2001 2001 HOH HOH . E 5 HOH H 2 2002 2002 HOH HOH . E 5 HOH H 3 2003 2003 HOH HOH . E 5 HOH H 4 2004 2004 HOH HOH . E 5 HOH H 5 2005 2005 HOH HOH . E 5 HOH H 6 2006 2006 HOH HOH . E 5 HOH H 7 2007 2007 HOH HOH . E 5 HOH H 8 2008 2008 HOH HOH . E 5 HOH H 9 2009 2009 HOH HOH . E 5 HOH H 10 2010 2010 HOH HOH . E 5 HOH H 11 2011 2011 HOH HOH . E 5 HOH H 12 2012 2012 HOH HOH . E 5 HOH H 13 2013 2013 HOH HOH . E 5 HOH H 14 2014 2014 HOH HOH . E 5 HOH H 15 2015 2015 HOH HOH . E 5 HOH H 16 2016 2016 HOH HOH . E 5 HOH H 17 2017 2017 HOH HOH . E 5 HOH H 18 2018 2018 HOH HOH . E 5 HOH H 19 2019 2019 HOH HOH . E 5 HOH H 20 2020 2020 HOH HOH . E 5 HOH H 21 2021 2021 HOH HOH . E 5 HOH H 22 2022 2022 HOH HOH . E 5 HOH H 23 2023 2023 HOH HOH . E 5 HOH H 24 2024 2024 HOH HOH . E 5 HOH H 25 2025 2025 HOH HOH . E 5 HOH H 26 2026 2026 HOH HOH . E 5 HOH H 27 2027 2027 HOH HOH . E 5 HOH H 28 2028 2028 HOH HOH . E 5 HOH H 29 2029 2029 HOH HOH . E 5 HOH H 30 2030 2030 HOH HOH . E 5 HOH H 31 2031 2031 HOH HOH . E 5 HOH H 32 2032 2032 HOH HOH . E 5 HOH H 33 2033 2033 HOH HOH . E 5 HOH H 34 2034 2034 HOH HOH . E 5 HOH H 35 2035 2035 HOH HOH . E 5 HOH H 36 2036 2036 HOH HOH . E 5 HOH H 37 2037 2037 HOH HOH . E 5 HOH H 38 2038 2038 HOH HOH . E 5 HOH H 39 2039 2039 HOH HOH . E 5 HOH H 40 2040 2040 HOH HOH . E 5 HOH H 41 2041 2041 HOH HOH . E 5 HOH H 42 2042 2042 HOH HOH . E 5 HOH H 43 2043 2043 HOH HOH . E 5 HOH H 44 2044 2044 HOH HOH . E 5 HOH H 45 2045 2045 HOH HOH . E 5 HOH H 46 2046 2046 HOH HOH . E 5 HOH H 47 2047 2047 HOH HOH . E 5 HOH H 48 2048 2048 HOH HOH . E 5 HOH H 49 2049 2049 HOH HOH . E 5 HOH H 50 2050 2050 HOH HOH . E 5 HOH H 51 2051 2051 HOH HOH . E 5 HOH H 52 2052 2052 HOH HOH . E 5 HOH H 53 2053 2053 HOH HOH . E 5 HOH H 54 2054 2054 HOH HOH . E 5 HOH H 55 2055 2055 HOH HOH . E 5 HOH H 56 2056 2056 HOH HOH . E 5 HOH H 57 2057 2057 HOH HOH . E 5 HOH H 58 2058 2058 HOH HOH . E 5 HOH H 59 2059 2059 HOH HOH . E 5 HOH H 60 2060 2060 HOH HOH . F 5 HOH I 1 2001 2001 HOH HOH . F 5 HOH I 2 2002 2002 HOH HOH . F 5 HOH I 3 2003 2003 HOH HOH . F 5 HOH I 4 2004 2004 HOH HOH . F 5 HOH I 5 2005 2005 HOH HOH . G 5 HOH L 1 2001 2001 HOH HOH . G 5 HOH L 2 2002 2002 HOH HOH . G 5 HOH L 3 2003 2003 HOH HOH . G 5 HOH L 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 C1D . . . D 4 6.478 -15.324 10.854 1 20.46 ? C1 C1D 1246 H 1 HETATM 2 N N2 C1D . . . D 4 7.668 -16.043 10.597 1 20.92 ? N2 C1D 1246 H 1 HETATM 3 C C3 C1D . . . D 4 8.703 -15.506 9.8 1 20.91 ? C3 C1D 1246 H 1 HETATM 4 C C4 C1D . . . D 4 8.533 -14.216 9.249 1 20.78 ? C4 C1D 1246 H 1 HETATM 5 C C5 C1D . . . D 4 7.344 -13.499 9.506 1 21.09 ? C5 C1D 1246 H 1 HETATM 6 C C6 C1D . . . D 4 6.316 -14.043 10.305 1 20.87 ? C6 C1D 1246 H 1 HETATM 7 C C11 C1D . . . D 4 9.986 -16.303 9.544 1 21.04 ? C11 C1D 1246 H 1 HETATM 8 C C12 C1D . . . D 4 10.669 -16.746 10.849 1 21.58 ? C12 C1D 1246 H 1 HETATM 9 F F13 C1D . . . D 4 9.692 -17.409 8.824 1 23.82 ? F13 C1D 1246 H 1 HETATM 10 F F14 C1D . . . D 4 10.878 -15.566 8.843 1 21.12 ? F14 C1D 1246 H 1 HETATM 11 N N15 C1D . . . D 4 11.196 -15.577 11.604 1 22.42 ? N15 C1D 1246 H 1 HETATM 12 C C18 C1D . . . D 4 10.596 -14.914 12.674 1 21.96 ? C18 C1D 1246 H 1 HETATM 13 C C19 C1D . . . D 4 11.216 -13.676 13.256 1 22.14 ? C19 C1D 1246 H 1 HETATM 14 N N20 C1D . . . D 4 10.582 -13.014 14.354 1 21.59 ? N20 C1D 1246 H 1 HETATM 15 C C21 C1D . . . D 4 9.354 -13.553 14.869 1 22.52 ? C21 C1D 1246 H 1 HETATM 16 C C22 C1D . . . D 4 8.808 -14.671 14.33 1 22.27 ? C22 C1D 1246 H 1 HETATM 17 N N23 C1D . . . D 4 9.472 -15.366 13.185 1 21.6 ? N23 C1D 1246 H 1 HETATM 18 C C24 C1D . . . D 4 11.206 -11.775 14.937 1 21.83 ? C24 C1D 1246 H 1 HETATM 19 C C25 C1D . . . D 4 12.477 -12.028 15.801 1 19.82 ? C25 C1D 1246 H 1 HETATM 20 N N28 C1D . . . D 4 13.589 -12.719 15.093 1 19.77 ? N28 C1D 1246 H 1 HETATM 21 C C29 C1D . . . D 4 14.769 -11.843 15.222 1 20.34 ? C29 C1D 1246 H 1 HETATM 22 C C30 C1D . . . D 4 15.693 -11.691 14.001 1 19.5 ? C30 C1D 1246 H 1 HETATM 23 C C33 C1D . . . D 4 15.826 -10.384 13.5 1 19.84 ? C33 C1D 1246 H 1 HETATM 24 C C34 C1D . . . D 4 16.633 -10.088 12.389 1 21.55 ? C34 C1D 1246 H 1 HETATM 25 C C2 C1D . . . D 4 16.349 -14.187 13.794 1 21.19 ? C2 C1D 1246 H 1 HETATM 26 C C35 C1D . . . D 4 17.33 -11.122 11.754 1 21.94 ? C35 C1D 1246 H 1 HETATM 27 C C37 C1D . . . D 4 16.406 -12.742 13.354 1 19.62 ? C37 C1D 1246 H 1 HETATM 28 O O42 C1D . . . D 4 12.255 -13.253 12.787 1 23.16 ? O42 C1D 1246 H 1 HETATM 29 N N6 C1D . . . D 4 18.142 -10.836 10.633 1 23.5 ? N6 C1D 1246 H 1 HETATM 30 CL CL43 C1D . . . D 4 8.521 -12.813 16.189 1 24.99 ? CL43 C1D 1246 H 1 HETATM 31 N N29 C1D . . . D 4 17.21 -12.433 12.241 1 19.66 ? N29 C1D 1246 H 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #