data_2BYO
#
_model_server_result.job_id            OQZj6dfWRb9Bnj67BPtvWQ 
_model_server_result.datetime_utc      '2024-11-06 01:37:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2byo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1210}' 
#
_entry.id    2BYO 
#
_exptl.entry_id    2BYO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2BYO 
_cell.length_a            54.257 
_cell.length_b            54.257 
_cell.length_c            269.983 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2BYO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 B ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? 
metalc ? metalc2 A OE2 GLU 27 A GLU 27 5_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc3 A NE2 HIS 42 A HIS 42 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc4 A ND1 HIS 42 A HIS 42 1_555 G ZN ZN . A ZN 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc5 A OD2 ASP 61 A ASP 61 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc6 A OD1 ASP 63 A ASP 63 1_555 G ZN ZN . A ZN 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? 
metalc ? metalc7 A OE2 GLU 80 A GLU 80 6_554 B ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc8 A OD1 ASP 98 A ASP 98 1_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? 
metalc ? metalc9 A OD2 ASP 99 A ASP 99 1_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? 
metalc ? metalc10 A OD1 ASP 160 A ASP 160 1_555 E ZN ZN . A ZN 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc11 A NE2 HIS 179 A HIS 179 5_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc12 A NE2 HIS 180 A HIS 180 1_555 F ZN ZN . A ZN 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc13 A OE2 GLU 202 A GLU 202 8_565 B ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? 
metalc ? metalc14 B ZN ZN . A ZN 1208 1_555 N O HOH . A HOH 2118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc15 C ZN ZN . A ZN 1209 1_555 N O HOH . A HOH 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc16 C ZN ZN . A ZN 1209 1_555 N O HOH . A HOH 2120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc17 E ZN ZN . A ZN 1211 1_555 N O HOH . A HOH 2121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc18 E ZN ZN . A ZN 1211 1_555 N O HOH . A HOH 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? 
metalc ? metalc19 F ZN ZN . A ZN 1212 1_555 N O HOH . A HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc20 F ZN ZN . A ZN 1212 1_555 N O HOH . A HOH 2124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? 
metalc ? metalc21 G ZN ZN . A ZN 1213 1_555 N O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     2BYO 
_atom_sites.fract_transf_matrix[1][1]    0.018431 
_atom_sites.fract_transf_matrix[1][2]    0.010641 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1208 1208 ZN ZN . 
C 2 ZN A 1 1209 1209 ZN ZN . 
D 2 ZN A 1 1210 1210 ZN ZN . 
E 2 ZN A 1 1211 1211 ZN ZN . 
F 2 ZN A 1 1212 1212 ZN ZN . 
G 2 ZN A 1 1213 1213 ZN ZN . 
H 3 ACT A 1 1214 1214 ACT ACT . 
I 4 HXA A 1 1215 1215 HXA HXA . 
J 5 LNL A 1 1216 1216 LNL LNL . 
K 5 LNL A 1 1217 1217 LNL LNL . 
L 6 OAA A 1 1218 1218 OAA OAA . 
M 7 MLT A 1 1219 1219 MLT MLT . 
N 8 HOH A 1 2001 2001 HOH HOH . 
N 8 HOH A 2 2002 2002 HOH HOH . 
N 8 HOH A 3 2003 2003 HOH HOH . 
N 8 HOH A 4 2004 2004 HOH HOH . 
N 8 HOH A 5 2005 2005 HOH HOH . 
N 8 HOH A 6 2006 2006 HOH HOH . 
N 8 HOH A 7 2007 2007 HOH HOH . 
N 8 HOH A 8 2008 2008 HOH HOH . 
N 8 HOH A 9 2009 2009 HOH HOH . 
N 8 HOH A 10 2010 2010 HOH HOH . 
N 8 HOH A 11 2011 2011 HOH HOH . 
N 8 HOH A 12 2012 2012 HOH HOH . 
N 8 HOH A 13 2013 2013 HOH HOH . 
N 8 HOH A 14 2014 2014 HOH HOH . 
N 8 HOH A 15 2015 2015 HOH HOH . 
N 8 HOH A 16 2016 2016 HOH HOH . 
N 8 HOH A 17 2017 2017 HOH HOH . 
N 8 HOH A 18 2018 2018 HOH HOH . 
N 8 HOH A 19 2019 2019 HOH HOH . 
N 8 HOH A 20 2020 2020 HOH HOH . 
N 8 HOH A 21 2021 2021 HOH HOH . 
N 8 HOH A 22 2022 2022 HOH HOH . 
N 8 HOH A 23 2023 2023 HOH HOH . 
N 8 HOH A 24 2024 2024 HOH HOH . 
N 8 HOH A 25 2025 2025 HOH HOH . 
N 8 HOH A 26 2026 2026 HOH HOH . 
N 8 HOH A 27 2027 2027 HOH HOH . 
N 8 HOH A 28 2028 2028 HOH HOH . 
N 8 HOH A 29 2029 2029 HOH HOH . 
N 8 HOH A 30 2030 2030 HOH HOH . 
N 8 HOH A 31 2031 2031 HOH HOH . 
N 8 HOH A 32 2032 2032 HOH HOH . 
N 8 HOH A 33 2033 2033 HOH HOH . 
N 8 HOH A 34 2034 2034 HOH HOH . 
N 8 HOH A 35 2035 2035 HOH HOH . 
N 8 HOH A 36 2036 2036 HOH HOH . 
N 8 HOH A 37 2037 2037 HOH HOH . 
N 8 HOH A 38 2038 2038 HOH HOH . 
N 8 HOH A 39 2039 2039 HOH HOH . 
N 8 HOH A 40 2040 2040 HOH HOH . 
N 8 HOH A 41 2041 2041 HOH HOH . 
N 8 HOH A 42 2042 2042 HOH HOH . 
N 8 HOH A 43 2043 2043 HOH HOH . 
N 8 HOH A 44 2044 2044 HOH HOH . 
N 8 HOH A 45 2045 2045 HOH HOH . 
N 8 HOH A 46 2046 2046 HOH HOH . 
N 8 HOH A 47 2047 2047 HOH HOH . 
N 8 HOH A 48 2048 2048 HOH HOH . 
N 8 HOH A 49 2049 2049 HOH HOH . 
N 8 HOH A 50 2050 2050 HOH HOH . 
N 8 HOH A 51 2051 2051 HOH HOH . 
N 8 HOH A 52 2052 2052 HOH HOH . 
N 8 HOH A 53 2053 2053 HOH HOH . 
N 8 HOH A 54 2054 2054 HOH HOH . 
N 8 HOH A 55 2055 2055 HOH HOH . 
N 8 HOH A 56 2056 2056 HOH HOH . 
N 8 HOH A 57 2057 2057 HOH HOH . 
N 8 HOH A 58 2058 2058 HOH HOH . 
N 8 HOH A 59 2059 2059 HOH HOH . 
N 8 HOH A 60 2060 2060 HOH HOH . 
N 8 HOH A 61 2061 2061 HOH HOH . 
N 8 HOH A 62 2062 2062 HOH HOH . 
N 8 HOH A 63 2063 2063 HOH HOH . 
N 8 HOH A 64 2064 2064 HOH HOH . 
N 8 HOH A 65 2065 2065 HOH HOH . 
N 8 HOH A 66 2066 2066 HOH HOH . 
N 8 HOH A 67 2067 2067 HOH HOH . 
N 8 HOH A 68 2068 2068 HOH HOH . 
N 8 HOH A 69 2069 2069 HOH HOH . 
N 8 HOH A 70 2070 2070 HOH HOH . 
N 8 HOH A 71 2071 2071 HOH HOH . 
N 8 HOH A 72 2072 2072 HOH HOH . 
N 8 HOH A 73 2073 2073 HOH HOH . 
N 8 HOH A 74 2074 2074 HOH HOH . 
N 8 HOH A 75 2075 2075 HOH HOH . 
N 8 HOH A 76 2076 2076 HOH HOH . 
N 8 HOH A 77 2077 2077 HOH HOH . 
N 8 HOH A 78 2078 2078 HOH HOH . 
N 8 HOH A 79 2079 2079 HOH HOH . 
N 8 HOH A 80 2080 2080 HOH HOH . 
N 8 HOH A 81 2081 2081 HOH HOH . 
N 8 HOH A 82 2082 2082 HOH HOH . 
N 8 HOH A 83 2083 2083 HOH HOH . 
N 8 HOH A 84 2084 2084 HOH HOH . 
N 8 HOH A 85 2085 2085 HOH HOH . 
N 8 HOH A 86 2086 2086 HOH HOH . 
N 8 HOH A 87 2087 2087 HOH HOH . 
N 8 HOH A 88 2088 2088 HOH HOH . 
N 8 HOH A 89 2089 2089 HOH HOH . 
N 8 HOH A 90 2090 2090 HOH HOH . 
N 8 HOH A 91 2091 2091 HOH HOH . 
N 8 HOH A 92 2092 2092 HOH HOH . 
N 8 HOH A 93 2093 2093 HOH HOH . 
N 8 HOH A 94 2094 2094 HOH HOH . 
N 8 HOH A 95 2095 2095 HOH HOH . 
N 8 HOH A 96 2096 2096 HOH HOH . 
N 8 HOH A 97 2097 2097 HOH HOH . 
N 8 HOH A 98 2098 2098 HOH HOH . 
N 8 HOH A 99 2099 2099 HOH HOH . 
N 8 HOH A 100 2100 2100 HOH HOH . 
N 8 HOH A 101 2101 2101 HOH HOH . 
N 8 HOH A 102 2102 2102 HOH HOH . 
N 8 HOH A 103 2103 2103 HOH HOH . 
N 8 HOH A 104 2104 2104 HOH HOH . 
N 8 HOH A 105 2105 2105 HOH HOH . 
N 8 HOH A 106 2106 2106 HOH HOH . 
N 8 HOH A 107 2107 2107 HOH HOH . 
N 8 HOH A 108 2108 2108 HOH HOH . 
N 8 HOH A 109 2109 2109 HOH HOH . 
N 8 HOH A 110 2110 2110 HOH HOH . 
N 8 HOH A 111 2111 2111 HOH HOH . 
N 8 HOH A 112 2112 2112 HOH HOH . 
N 8 HOH A 113 2113 2113 HOH HOH . 
N 8 HOH A 114 2114 2114 HOH HOH . 
N 8 HOH A 115 2115 2115 HOH HOH . 
N 8 HOH A 116 2116 2116 HOH HOH . 
N 8 HOH A 117 2117 2117 HOH HOH . 
N 8 HOH A 118 2118 2118 HOH HOH . 
N 8 HOH A 119 2119 2119 HOH HOH . 
N 8 HOH A 120 2120 2120 HOH HOH . 
N 8 HOH A 121 2121 2121 HOH HOH . 
N 8 HOH A 122 2122 2122 HOH HOH . 
N 8 HOH A 123 2123 2123 HOH HOH . 
N 8 HOH A 124 2124 2124 HOH HOH . 
N 8 HOH A 125 2125 2125 HOH HOH . 
N 8 HOH A 126 2126 2126 HOH HOH . 
N 8 HOH A 127 2127 2127 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               20.004 
_atom_site.Cartn_y               8.265 
_atom_site.Cartn_z               38.356 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.25 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           1210 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#