data_2BYO # _model_server_result.job_id 0gnN212k5k_Mm0yds7ThGg _model_server_result.datetime_utc '2024-11-06 01:40:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2byo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1217}' # _entry.id 2BYO # _exptl.entry_id 2BYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.43 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ALPHA-LINOLENIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BYO _cell.length_a 54.257 _cell.length_b 54.257 _cell.length_c 269.983 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 21 A ASP 21 1_555 B ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc2 A OE2 GLU 27 A GLU 27 5_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc3 A NE2 HIS 42 A HIS 42 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 A ND1 HIS 42 A HIS 42 1_555 G ZN ZN . A ZN 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc5 A OD2 ASP 61 A ASP 61 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc6 A OD1 ASP 63 A ASP 63 1_555 G ZN ZN . A ZN 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? metalc ? metalc7 A OE2 GLU 80 A GLU 80 6_554 B ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc8 A OD1 ASP 98 A ASP 98 1_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc9 A OD2 ASP 99 A ASP 99 1_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc10 A OD1 ASP 160 A ASP 160 1_555 E ZN ZN . A ZN 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc11 A NE2 HIS 179 A HIS 179 5_555 D ZN ZN . A ZN 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc12 A NE2 HIS 180 A HIS 180 1_555 F ZN ZN . A ZN 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc13 A OE2 GLU 202 A GLU 202 8_565 B ZN ZN . A ZN 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc14 B ZN ZN . A ZN 1208 1_555 N O HOH . A HOH 2118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc15 C ZN ZN . A ZN 1209 1_555 N O HOH . A HOH 2119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc16 C ZN ZN . A ZN 1209 1_555 N O HOH . A HOH 2120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc17 E ZN ZN . A ZN 1211 1_555 N O HOH . A HOH 2121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc18 E ZN ZN . A ZN 1211 1_555 N O HOH . A HOH 2122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc19 F ZN ZN . A ZN 1212 1_555 N O HOH . A HOH 2123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc20 F ZN ZN . A ZN 1212 1_555 N O HOH . A HOH 2124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc21 G ZN ZN . A ZN 1213 1_555 N O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? # _chem_comp.formula 'C18 H30 O2' _chem_comp.formula_weight 278.43 _chem_comp.id LNL _chem_comp.mon_nstd_flag . _chem_comp.name 'ALPHA-LINOLENIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 LNL sing 255 n n O1 HO1 LNL sing 256 n n C1 O2 LNL doub 257 n n C1 C2 LNL sing 258 n n C2 C3 LNL sing 259 n n C2 H21 LNL sing 260 n n C2 H22 LNL sing 261 n n C3 C4 LNL sing 262 n n C3 H31 LNL sing 263 n n C3 H32 LNL sing 264 n n C4 C5 LNL sing 265 n n C4 H41 LNL sing 266 n n C4 H42 LNL sing 267 n n C5 C6 LNL sing 268 n n C5 H51 LNL sing 269 n n C5 H52 LNL sing 270 n n C6 C7 LNL sing 271 n n C6 H61 LNL sing 272 n n C6 H62 LNL sing 273 n n C7 C8 LNL sing 274 n n C7 H71 LNL sing 275 n n C7 H72 LNL sing 276 n n C8 C9 LNL sing 277 n n C8 H81 LNL sing 278 n n C8 H82 LNL sing 279 n n C9 C10 LNL doub 280 z n C9 H9 LNL sing 281 n n C10 C11 LNL sing 282 n n C10 H10 LNL sing 283 n n C11 C12 LNL sing 284 n n C11 H111 LNL sing 285 n n C11 H112 LNL sing 286 n n C12 C13 LNL doub 287 z n C12 H12 LNL sing 288 n n C13 C14 LNL sing 289 n n C13 H13 LNL sing 290 n n C14 C15 LNL sing 291 n n C14 H141 LNL sing 292 n n C14 H142 LNL sing 293 n n C15 C16 LNL doub 294 z n C15 H15 LNL sing 295 n n C16 C17 LNL sing 296 n n C16 H16 LNL sing 297 n n C17 C18 LNL sing 298 n n C17 H171 LNL sing 299 n n C17 H172 LNL sing 300 n n C18 H181 LNL sing 301 n n C18 H182 LNL sing 302 n n C18 H183 LNL sing 303 n n # _atom_sites.entry_id 2BYO _atom_sites.fract_transf_matrix[1][1] 0.018431 _atom_sites.fract_transf_matrix[1][2] 0.010641 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1208 1208 ZN ZN . C 2 ZN A 1 1209 1209 ZN ZN . D 2 ZN A 1 1210 1210 ZN ZN . E 2 ZN A 1 1211 1211 ZN ZN . F 2 ZN A 1 1212 1212 ZN ZN . G 2 ZN A 1 1213 1213 ZN ZN . H 3 ACT A 1 1214 1214 ACT ACT . I 4 HXA A 1 1215 1215 HXA HXA . J 5 LNL A 1 1216 1216 LNL LNL . K 5 LNL A 1 1217 1217 LNL LNL . L 6 OAA A 1 1218 1218 OAA OAA . M 7 MLT A 1 1219 1219 MLT MLT . N 8 HOH A 1 2001 2001 HOH HOH . N 8 HOH A 2 2002 2002 HOH HOH . N 8 HOH A 3 2003 2003 HOH HOH . N 8 HOH A 4 2004 2004 HOH HOH . N 8 HOH A 5 2005 2005 HOH HOH . N 8 HOH A 6 2006 2006 HOH HOH . N 8 HOH A 7 2007 2007 HOH HOH . N 8 HOH A 8 2008 2008 HOH HOH . N 8 HOH A 9 2009 2009 HOH HOH . N 8 HOH A 10 2010 2010 HOH HOH . N 8 HOH A 11 2011 2011 HOH HOH . N 8 HOH A 12 2012 2012 HOH HOH . N 8 HOH A 13 2013 2013 HOH HOH . N 8 HOH A 14 2014 2014 HOH HOH . N 8 HOH A 15 2015 2015 HOH HOH . N 8 HOH A 16 2016 2016 HOH HOH . N 8 HOH A 17 2017 2017 HOH HOH . N 8 HOH A 18 2018 2018 HOH HOH . N 8 HOH A 19 2019 2019 HOH HOH . N 8 HOH A 20 2020 2020 HOH HOH . N 8 HOH A 21 2021 2021 HOH HOH . N 8 HOH A 22 2022 2022 HOH HOH . N 8 HOH A 23 2023 2023 HOH HOH . N 8 HOH A 24 2024 2024 HOH HOH . N 8 HOH A 25 2025 2025 HOH HOH . N 8 HOH A 26 2026 2026 HOH HOH . N 8 HOH A 27 2027 2027 HOH HOH . N 8 HOH A 28 2028 2028 HOH HOH . N 8 HOH A 29 2029 2029 HOH HOH . N 8 HOH A 30 2030 2030 HOH HOH . N 8 HOH A 31 2031 2031 HOH HOH . N 8 HOH A 32 2032 2032 HOH HOH . N 8 HOH A 33 2033 2033 HOH HOH . N 8 HOH A 34 2034 2034 HOH HOH . N 8 HOH A 35 2035 2035 HOH HOH . N 8 HOH A 36 2036 2036 HOH HOH . N 8 HOH A 37 2037 2037 HOH HOH . N 8 HOH A 38 2038 2038 HOH HOH . N 8 HOH A 39 2039 2039 HOH HOH . N 8 HOH A 40 2040 2040 HOH HOH . N 8 HOH A 41 2041 2041 HOH HOH . N 8 HOH A 42 2042 2042 HOH HOH . N 8 HOH A 43 2043 2043 HOH HOH . N 8 HOH A 44 2044 2044 HOH HOH . N 8 HOH A 45 2045 2045 HOH HOH . N 8 HOH A 46 2046 2046 HOH HOH . N 8 HOH A 47 2047 2047 HOH HOH . N 8 HOH A 48 2048 2048 HOH HOH . N 8 HOH A 49 2049 2049 HOH HOH . N 8 HOH A 50 2050 2050 HOH HOH . N 8 HOH A 51 2051 2051 HOH HOH . N 8 HOH A 52 2052 2052 HOH HOH . N 8 HOH A 53 2053 2053 HOH HOH . N 8 HOH A 54 2054 2054 HOH HOH . N 8 HOH A 55 2055 2055 HOH HOH . N 8 HOH A 56 2056 2056 HOH HOH . N 8 HOH A 57 2057 2057 HOH HOH . N 8 HOH A 58 2058 2058 HOH HOH . N 8 HOH A 59 2059 2059 HOH HOH . N 8 HOH A 60 2060 2060 HOH HOH . N 8 HOH A 61 2061 2061 HOH HOH . N 8 HOH A 62 2062 2062 HOH HOH . N 8 HOH A 63 2063 2063 HOH HOH . N 8 HOH A 64 2064 2064 HOH HOH . N 8 HOH A 65 2065 2065 HOH HOH . N 8 HOH A 66 2066 2066 HOH HOH . N 8 HOH A 67 2067 2067 HOH HOH . N 8 HOH A 68 2068 2068 HOH HOH . N 8 HOH A 69 2069 2069 HOH HOH . N 8 HOH A 70 2070 2070 HOH HOH . N 8 HOH A 71 2071 2071 HOH HOH . N 8 HOH A 72 2072 2072 HOH HOH . N 8 HOH A 73 2073 2073 HOH HOH . N 8 HOH A 74 2074 2074 HOH HOH . N 8 HOH A 75 2075 2075 HOH HOH . N 8 HOH A 76 2076 2076 HOH HOH . N 8 HOH A 77 2077 2077 HOH HOH . N 8 HOH A 78 2078 2078 HOH HOH . N 8 HOH A 79 2079 2079 HOH HOH . N 8 HOH A 80 2080 2080 HOH HOH . N 8 HOH A 81 2081 2081 HOH HOH . N 8 HOH A 82 2082 2082 HOH HOH . N 8 HOH A 83 2083 2083 HOH HOH . N 8 HOH A 84 2084 2084 HOH HOH . N 8 HOH A 85 2085 2085 HOH HOH . N 8 HOH A 86 2086 2086 HOH HOH . N 8 HOH A 87 2087 2087 HOH HOH . N 8 HOH A 88 2088 2088 HOH HOH . N 8 HOH A 89 2089 2089 HOH HOH . N 8 HOH A 90 2090 2090 HOH HOH . N 8 HOH A 91 2091 2091 HOH HOH . N 8 HOH A 92 2092 2092 HOH HOH . N 8 HOH A 93 2093 2093 HOH HOH . N 8 HOH A 94 2094 2094 HOH HOH . N 8 HOH A 95 2095 2095 HOH HOH . N 8 HOH A 96 2096 2096 HOH HOH . N 8 HOH A 97 2097 2097 HOH HOH . N 8 HOH A 98 2098 2098 HOH HOH . N 8 HOH A 99 2099 2099 HOH HOH . N 8 HOH A 100 2100 2100 HOH HOH . N 8 HOH A 101 2101 2101 HOH HOH . N 8 HOH A 102 2102 2102 HOH HOH . N 8 HOH A 103 2103 2103 HOH HOH . N 8 HOH A 104 2104 2104 HOH HOH . N 8 HOH A 105 2105 2105 HOH HOH . N 8 HOH A 106 2106 2106 HOH HOH . N 8 HOH A 107 2107 2107 HOH HOH . N 8 HOH A 108 2108 2108 HOH HOH . N 8 HOH A 109 2109 2109 HOH HOH . N 8 HOH A 110 2110 2110 HOH HOH . N 8 HOH A 111 2111 2111 HOH HOH . N 8 HOH A 112 2112 2112 HOH HOH . N 8 HOH A 113 2113 2113 HOH HOH . N 8 HOH A 114 2114 2114 HOH HOH . N 8 HOH A 115 2115 2115 HOH HOH . N 8 HOH A 116 2116 2116 HOH HOH . N 8 HOH A 117 2117 2117 HOH HOH . N 8 HOH A 118 2118 2118 HOH HOH . N 8 HOH A 119 2119 2119 HOH HOH . N 8 HOH A 120 2120 2120 HOH HOH . N 8 HOH A 121 2121 2121 HOH HOH . N 8 HOH A 122 2122 2122 HOH HOH . N 8 HOH A 123 2123 2123 HOH HOH . N 8 HOH A 124 2124 2124 HOH HOH . N 8 HOH A 125 2125 2125 HOH HOH . N 8 HOH A 126 2126 2126 HOH HOH . N 8 HOH A 127 2127 2127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 LNL . . . K 5 9.645 7.59 15.411 1 70.19 ? O1 LNL 1217 A 1 HETATM 2 C C1 LNL . . . K 5 10.371 8.511 15.857 1 68.63 ? C1 LNL 1217 A 1 HETATM 3 O O2 LNL . . . K 5 10.119 9.085 16.942 1 70.08 ? O2 LNL 1217 A 1 HETATM 4 C C2 LNL . . . K 5 11.604 8.926 15.074 1 67.94 ? C2 LNL 1217 A 1 HETATM 5 C C3 LNL . . . K 5 11.346 10.152 14.206 1 66.97 ? C3 LNL 1217 A 1 HETATM 6 C C4 LNL . . . K 5 11.413 11.462 15 1 66.63 ? C4 LNL 1217 A 1 HETATM 7 C C5 LNL . . . K 5 10.072 12.186 15.196 1 66.24 ? C5 LNL 1217 A 1 HETATM 8 C C6 LNL . . . K 5 9.201 12.289 13.931 1 66.63 ? C6 LNL 1217 A 1 HETATM 9 C C7 LNL . . . K 5 7.723 12.46 14.292 1 66.44 ? C7 LNL 1217 A 1 HETATM 10 C C8 LNL . . . K 5 6.979 11.129 14.45 1 65.85 ? C8 LNL 1217 A 1 HETATM 11 C C9 LNL . . . K 5 5.514 11.229 14.015 1 64.83 ? C9 LNL 1217 A 1 HETATM 12 C C10 LNL . . . K 5 4.52 11.174 15.174 1 63.34 ? C10 LNL 1217 A 1 HETATM 13 C C11 LNL . . . K 5 4.091 12.58 15.545 1 61.91 ? C11 LNL 1217 A 1 HETATM 14 C C12 LNL . . . K 5 3.209 13.3 14.837 1 59.92 ? C12 LNL 1217 A 1 HETATM 15 C C13 LNL . . . K 5 2.515 12.797 13.585 1 58.98 ? C13 LNL 1217 A 1 HETATM 16 C C14 LNL . . . K 5 2.022 13.957 12.719 1 57.69 ? C14 LNL 1217 A 1 HETATM 17 C C15 LNL . . . K 5 0.589 14.396 13.024 1 55.04 ? C15 LNL 1217 A 1 HETATM 18 C C16 LNL . . . K 5 -0.153 14.818 11.755 1 54.39 ? C16 LNL 1217 A 1 HETATM 19 C C17 LNL . . . K 5 -0.581 13.617 10.907 1 54.52 ? C17 LNL 1217 A 1 HETATM 20 C C18 LNL . . . K 5 -1.443 14.004 9.72 1 53.13 ? C18 LNL 1217 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #