data_2BYQ # _model_server_result.job_id qL6IzDYMtneBN-0OfXybQw _model_server_result.datetime_utc '2024-11-23 10:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2byq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":300}' # _entry.id 2BYQ # _exptl.entry_id 2BYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EPIBATIDINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BYQ _cell.length_a 200.925 _cell.length_b 200.925 _cell.length_c 200.925 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 135 A CYS 127 1_555 A SG CYS 148 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf2 A SG CYS 198 A CYS 190 1_555 A SG CYS 199 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 135 B CYS 127 1_555 B SG CYS 148 B CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 198 B CYS 190 1_555 B SG CYS 199 B CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf5 C SG CYS 135 C CYS 127 1_555 C SG CYS 148 C CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 C SG CYS 198 C CYS 190 1_555 C SG CYS 199 C CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf7 D SG CYS 135 D CYS 127 1_555 D SG CYS 148 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf8 D SG CYS 198 D CYS 190 1_555 D SG CYS 199 D CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf9 E SG CYS 135 E CYS 127 1_555 E SG CYS 148 E CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 198 E CYS 190 1_555 E SG CYS 199 E CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C11 H13 Cl N2' _chem_comp.formula_weight 208.687 _chem_comp.id EPJ _chem_comp.mon_nstd_flag . _chem_comp.name EPIBATIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R)-2-(6-CHLOROPYRIDIN-3-YL)-7-AZABICYCLO[2.2.1]HEPTANE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPJ sing 83 n n C1 C6 EPJ sing 84 n n C1 C7 EPJ sing 85 n n C1 H1 EPJ sing 86 n n C2 C3 EPJ sing 87 n n C2 H2C1 EPJ sing 88 n n C2 H2C2 EPJ sing 89 n n C3 C4 EPJ sing 90 n n C3 N1 EPJ sing 91 n n C3 H3 EPJ sing 92 n n C4 C5 EPJ sing 93 n n C4 H4C1 EPJ sing 94 n n C4 H4C2 EPJ sing 95 n n C5 C6 EPJ sing 96 n n C5 H5C1 EPJ sing 97 n n C5 H5C2 EPJ sing 98 n n C6 N1 EPJ sing 99 n n C6 H6 EPJ sing 100 n n N1 HA EPJ sing 101 n n C7 C8 EPJ doub 102 n y C7 C11 EPJ sing 103 n y C8 C9 EPJ sing 104 n y C8 H8 EPJ sing 105 n n C9 C10 EPJ doub 106 n y C9 H9 EPJ sing 107 n n C10 CL EPJ sing 108 n n C10 N2 EPJ sing 109 n y N2 C11 EPJ doub 110 n y C11 H11 EPJ sing 111 n n # _atom_sites.entry_id 2BYQ _atom_sites.fract_transf_matrix[1][1] 0.004977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 EPJ A 1 300 300 EPJ EPJ . G 2 EPJ B 1 300 300 EPJ EPJ . H 2 EPJ C 1 300 300 EPJ EPJ . I 2 EPJ D 1 300 300 EPJ EPJ . J 2 EPJ E 1 300 300 EPJ EPJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPJ . . . J 2 91.305 37.202 2.414 1 41.03 ? C1 EPJ 300 E 1 HETATM 2 C C2 EPJ . . . J 2 90.97 37.941 1.119 1 41.21 ? C2 EPJ 300 E 1 HETATM 3 C C3 EPJ . . . J 2 90.508 39.297 1.612 1 40.79 ? C3 EPJ 300 E 1 HETATM 4 C C4 EPJ . . . J 2 91.756 39.969 2.143 1 40.53 ? C4 EPJ 300 E 1 HETATM 5 C C5 EPJ . . . J 2 92.052 39.229 3.45 1 39.97 ? C5 EPJ 300 E 1 HETATM 6 C C6 EPJ . . . J 2 90.931 38.213 3.479 1 40.57 ? C6 EPJ 300 E 1 HETATM 7 N N1 EPJ . . . J 2 89.873 38.932 2.835 1 40 ? N1 EPJ 300 E 1 HETATM 8 C C7 EPJ . . . J 2 90.642 35.877 2.54 1 41.04 ? C7 EPJ 300 E 1 HETATM 9 C C8 EPJ . . . J 2 91.207 34.828 1.85 1 41.04 ? C8 EPJ 300 E 1 HETATM 10 C C9 EPJ . . . J 2 90.635 33.581 1.942 1 40.85 ? C9 EPJ 300 E 1 HETATM 11 C C10 EPJ . . . J 2 89.522 33.404 2.73 1 41.06 ? C10 EPJ 300 E 1 HETATM 12 CL CL EPJ . . . J 2 88.834 31.764 2.822 1 42.78 ? CL EPJ 300 E 1 HETATM 13 N N2 EPJ . . . J 2 88.975 34.424 3.412 1 40.84 ? N2 EPJ 300 E 1 HETATM 14 C C11 EPJ . . . J 2 89.516 35.644 3.327 1 41.41 ? C11 EPJ 300 E 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #