data_2BZ0 # _model_server_result.job_id xlbG6-jSU2X2Cqy9zpO0ag _model_server_result.datetime_utc '2025-02-27 17:22:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1175}' # _entry.id 2BZ0 # _exptl.entry_id 2BZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 521.208 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2BZ0 _cell.length_a 99.08 _cell.length_b 99.08 _cell.length_c 96.29 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 54 A CYS 54 1_555 C ZN ZN . A ZN 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A SG CYS 65 A CYS 65 1_555 C ZN ZN . A ZN 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A SG CYS 67 A CYS 67 1_555 C ZN ZN . A ZN 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc4 B SG CYS 54 B CYS 54 1_555 F ZN ZN . B ZN 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc5 B SG CYS 65 B CYS 65 1_555 F ZN ZN . B ZN 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc6 B SG CYS 67 B CYS 67 1_555 F ZN ZN . B ZN 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C11 H18 N5 O13 P3' _chem_comp.formula_weight 521.208 _chem_comp.id G2P _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G G2P sing 83 n n PG O2G G2P doub 84 n n PG O3G G2P sing 85 n n PG O3B G2P sing 86 n n O3B PB G2P sing 87 n n PB O1B G2P sing 88 n n PB O2B G2P doub 89 n n PB C3A G2P sing 90 n n C3A PA G2P sing 91 n n C3A H3A1 G2P sing 92 n n C3A H3A2 G2P sing 93 n n PA O1A G2P sing 94 n n PA O2A G2P doub 95 n n PA O5' G2P sing 96 n n O5' C5' G2P sing 97 n n C5' C4' G2P sing 98 n n C5' "H5'1" G2P sing 99 n n C5' "H5'2" G2P sing 100 n n C4' O4' G2P sing 101 n n C4' C3' G2P sing 102 n n C4' H4' G2P sing 103 n n O4' C1' G2P sing 104 n n C3' O3' G2P sing 105 n n C3' C2' G2P sing 106 n n C3' H3' G2P sing 107 n n O3' HA G2P sing 108 n n C2' O2' G2P sing 109 n n C2' C1' G2P sing 110 n n C2' H2' G2P sing 111 n n O2' HB G2P sing 112 n n C1' N9 G2P sing 113 n n C1' H1' G2P sing 114 n n N9 C8 G2P sing 115 n y N9 C4 G2P sing 116 n y C8 N7 G2P doub 117 n y C8 H8 G2P sing 118 n n N7 C5 G2P sing 119 n y C5 C6 G2P sing 120 n y C5 C4 G2P doub 121 n y C6 O6 G2P doub 122 n n C6 N1 G2P sing 123 n y N1 C2 G2P sing 124 n y N1 H1 G2P sing 125 n n C2 N2 G2P sing 126 n n C2 N3 G2P doub 127 n y N2 H2N1 G2P sing 128 n n N2 H2N2 G2P sing 129 n n N3 C4 G2P sing 130 n y HO1 O1G G2P sing 131 n n HO2 O3G G2P sing 132 n n HO3 O1A G2P sing 133 n n HO4 O1B G2P sing 134 n n # _atom_sites.entry_id 2BZ0 _atom_sites.fract_transf_matrix[1][1] 0.010093 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1174 1174 ZN ZN . D 3 MG A 1 1175 1175 MG MG . E 4 G2P A 1 1176 1176 G2P G2P . F 2 ZN B 1 1174 1174 ZN ZN . G 4 G2P B 1 1175 1175 G2P G2P . H 5 HOH A 1 2001 2001 HOH HOH . H 5 HOH A 2 2002 2002 HOH HOH . H 5 HOH A 3 2003 2003 HOH HOH . H 5 HOH A 4 2004 2004 HOH HOH . H 5 HOH A 5 2005 2005 HOH HOH . H 5 HOH A 6 2006 2006 HOH HOH . H 5 HOH A 7 2007 2007 HOH HOH . H 5 HOH A 8 2008 2008 HOH HOH . H 5 HOH A 9 2009 2009 HOH HOH . H 5 HOH A 10 2010 2010 HOH HOH . H 5 HOH A 11 2011 2011 HOH HOH . H 5 HOH A 12 2012 2012 HOH HOH . H 5 HOH A 13 2013 2013 HOH HOH . H 5 HOH A 14 2014 2014 HOH HOH . H 5 HOH A 15 2015 2015 HOH HOH . H 5 HOH A 16 2016 2016 HOH HOH . H 5 HOH A 17 2017 2017 HOH HOH . H 5 HOH A 18 2018 2018 HOH HOH . H 5 HOH A 19 2019 2019 HOH HOH . H 5 HOH A 20 2020 2020 HOH HOH . H 5 HOH A 21 2021 2021 HOH HOH . H 5 HOH A 22 2022 2022 HOH HOH . H 5 HOH A 23 2023 2023 HOH HOH . H 5 HOH A 24 2024 2024 HOH HOH . H 5 HOH A 25 2025 2025 HOH HOH . H 5 HOH A 26 2026 2026 HOH HOH . H 5 HOH A 27 2027 2027 HOH HOH . H 5 HOH A 28 2028 2028 HOH HOH . H 5 HOH A 29 2029 2029 HOH HOH . H 5 HOH A 30 2030 2030 HOH HOH . H 5 HOH A 31 2031 2031 HOH HOH . H 5 HOH A 32 2032 2032 HOH HOH . H 5 HOH A 33 2033 2033 HOH HOH . H 5 HOH A 34 2034 2034 HOH HOH . H 5 HOH A 35 2035 2035 HOH HOH . H 5 HOH A 36 2036 2036 HOH HOH . H 5 HOH A 37 2037 2037 HOH HOH . H 5 HOH A 38 2038 2038 HOH HOH . H 5 HOH A 39 2039 2039 HOH HOH . H 5 HOH A 40 2040 2040 HOH HOH . H 5 HOH A 41 2041 2041 HOH HOH . H 5 HOH A 42 2042 2042 HOH HOH . H 5 HOH A 43 2043 2043 HOH HOH . H 5 HOH A 44 2044 2044 HOH HOH . H 5 HOH A 45 2045 2045 HOH HOH . H 5 HOH A 46 2046 2046 HOH HOH . H 5 HOH A 47 2047 2047 HOH HOH . H 5 HOH A 48 2048 2048 HOH HOH . H 5 HOH A 49 2049 2049 HOH HOH . H 5 HOH A 50 2050 2050 HOH HOH . H 5 HOH A 51 2051 2051 HOH HOH . H 5 HOH A 52 2052 2052 HOH HOH . H 5 HOH A 53 2053 2053 HOH HOH . H 5 HOH A 54 2054 2054 HOH HOH . H 5 HOH A 55 2055 2055 HOH HOH . H 5 HOH A 56 2056 2056 HOH HOH . H 5 HOH A 57 2057 2057 HOH HOH . H 5 HOH A 58 2058 2058 HOH HOH . H 5 HOH A 59 2059 2059 HOH HOH . H 5 HOH A 60 2060 2060 HOH HOH . H 5 HOH A 61 2061 2061 HOH HOH . H 5 HOH A 62 2062 2062 HOH HOH . H 5 HOH A 63 2063 2063 HOH HOH . H 5 HOH A 64 2064 2064 HOH HOH . H 5 HOH A 65 2065 2065 HOH HOH . I 5 HOH B 1 2001 2001 HOH HOH . I 5 HOH B 2 2002 2002 HOH HOH . I 5 HOH B 3 2003 2003 HOH HOH . I 5 HOH B 4 2004 2004 HOH HOH . I 5 HOH B 5 2005 2005 HOH HOH . I 5 HOH B 6 2006 2006 HOH HOH . I 5 HOH B 7 2007 2007 HOH HOH . I 5 HOH B 8 2008 2008 HOH HOH . I 5 HOH B 9 2009 2009 HOH HOH . I 5 HOH B 10 2010 2010 HOH HOH . I 5 HOH B 11 2011 2011 HOH HOH . I 5 HOH B 12 2012 2012 HOH HOH . I 5 HOH B 13 2013 2013 HOH HOH . I 5 HOH B 14 2014 2014 HOH HOH . I 5 HOH B 15 2015 2015 HOH HOH . I 5 HOH B 16 2016 2016 HOH HOH . I 5 HOH B 17 2017 2017 HOH HOH . I 5 HOH B 18 2018 2018 HOH HOH . I 5 HOH B 19 2019 2019 HOH HOH . I 5 HOH B 20 2020 2020 HOH HOH . I 5 HOH B 21 2021 2021 HOH HOH . I 5 HOH B 22 2022 2022 HOH HOH . I 5 HOH B 23 2023 2023 HOH HOH . I 5 HOH B 24 2024 2024 HOH HOH . I 5 HOH B 25 2025 2025 HOH HOH . I 5 HOH B 26 2026 2026 HOH HOH . I 5 HOH B 27 2027 2027 HOH HOH . I 5 HOH B 28 2028 2028 HOH HOH . I 5 HOH B 29 2029 2029 HOH HOH . I 5 HOH B 30 2030 2030 HOH HOH . I 5 HOH B 31 2031 2031 HOH HOH . I 5 HOH B 32 2032 2032 HOH HOH . I 5 HOH B 33 2033 2033 HOH HOH . I 5 HOH B 34 2034 2034 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG G2P . . . G 4 32.514 13.104 -69.903 1 135.36 ? PG G2P 1175 B 1 HETATM 2 O O1G G2P . . . G 4 33.274 13.919 -68.939 1 147.86 ? O1G G2P 1175 B 1 HETATM 3 O O2G G2P . . . G 4 31.158 12.903 -69.485 1 128.8 ? O2G G2P 1175 B 1 HETATM 4 O O3G G2P . . . G 4 33.136 11.732 -69.932 1 125.19 ? O3G G2P 1175 B 1 HETATM 5 O O3B G2P . . . G 4 32.683 13.769 -71.391 1 151.47 ? O3B G2P 1175 B 1 HETATM 6 P PB G2P . . . G 4 32.018 13.226 -72.829 1 161.75 ? PB G2P 1175 B 1 HETATM 7 O O1B G2P . . . G 4 31.764 14.295 -73.852 1 161.01 ? O1B G2P 1175 B 1 HETATM 8 O O2B G2P . . . G 4 31.215 12.102 -72.861 1 162.28 ? O2B G2P 1175 B 1 HETATM 9 C C3A G2P . . . G 4 33.562 12.504 -73.393 1 159.18 ? C3A G2P 1175 B 1 HETATM 10 P PA G2P . . . G 4 34.624 13.658 -74.3 1 160.47 ? PA G2P 1175 B 1 HETATM 11 O O1A G2P . . . G 4 36.071 13.635 -73.862 1 159.73 ? O1A G2P 1175 B 1 HETATM 12 O O2A G2P . . . G 4 33.971 14.807 -74.798 1 154.82 ? O2A G2P 1175 B 1 HETATM 13 O O5' G2P . . . G 4 34.79 12.673 -75.558 1 149.07 ? O5' G2P 1175 B 1 HETATM 14 C C5' G2P . . . G 4 33.663 12.341 -76.357 1 127.1 ? C5' G2P 1175 B 1 HETATM 15 C C4' G2P . . . G 4 33.728 12.996 -77.731 1 107.32 ? C4' G2P 1175 B 1 HETATM 16 O O4' G2P . . . G 4 35.108 13.19 -78.182 1 96.78 ? O4' G2P 1175 B 1 HETATM 17 C C3' G2P . . . G 4 33.011 12.125 -78.751 1 106.03 ? C3' G2P 1175 B 1 HETATM 18 O O3' G2P . . . G 4 32.093 12.964 -79.5 1 101.85 ? O3' G2P 1175 B 1 HETATM 19 C C2' G2P . . . G 4 34.17 11.517 -79.549 1 101.77 ? C2' G2P 1175 B 1 HETATM 20 O O2' G2P . . . G 4 33.825 11.339 -80.925 1 78.19 ? O2' G2P 1175 B 1 HETATM 21 C C1' G2P . . . G 4 35.319 12.505 -79.429 1 104.09 ? C1' G2P 1175 B 1 HETATM 22 N N9 G2P . . . G 4 36.711 11.895 -79.372 1 104.15 ? N9 G2P 1175 B 1 HETATM 23 C C8 G2P . . . G 4 37.186 10.702 -78.794 1 103.37 ? C8 G2P 1175 B 1 HETATM 24 N N7 G2P . . . G 4 38.464 10.492 -78.935 1 109.32 ? N7 G2P 1175 B 1 HETATM 25 C C5 G2P . . . G 4 38.907 11.626 -79.667 1 119.98 ? C5 G2P 1175 B 1 HETATM 26 C C6 G2P . . . G 4 40.251 12.025 -80.164 1 126.7 ? C6 G2P 1175 B 1 HETATM 27 O O6 G2P . . . G 4 41.334 11.431 -80.041 1 135.29 ? O6 G2P 1175 B 1 HETATM 28 N N1 G2P . . . G 4 40.225 13.272 -80.869 1 118.27 ? N1 G2P 1175 B 1 HETATM 29 C C2 G2P . . . G 4 39.08 14.068 -81.088 1 102.84 ? C2 G2P 1175 B 1 HETATM 30 N N2 G2P . . . G 4 39.22 15.221 -81.769 1 96.51 ? N2 G2P 1175 B 1 HETATM 31 N N3 G2P . . . G 4 37.85 13.704 -80.629 1 99.79 ? N3 G2P 1175 B 1 HETATM 32 C C4 G2P . . . G 4 37.824 12.48 -79.932 1 111.03 ? C4 G2P 1175 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #