data_2BZK
#
_model_server_result.job_id            DAPnT3DD9ylAhxS0qav7bg 
_model_server_result.datetime_utc      '2024-10-18 04:33:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2bzk 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1306}' 
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_entry.id    2BZK 
#
_exptl.entry_id    2BZK 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2BZK 
_cell.length_a            97.889 
_cell.length_b            97.889 
_cell.length_c            80.493 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 2BZK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
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_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     2BZK 
_atom_sites.fract_transf_matrix[1][1]    0.010216 
_atom_sites.fract_transf_matrix[1][2]    0.005898 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011796 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012423 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ANP B 1 1306 1306 ANP ANP . 
D 4 HOH B 1 2001 2001 HOH HOH . 
D 4 HOH B 2 2002 2002 HOH HOH . 
D 4 HOH B 3 2003 2003 HOH HOH . 
D 4 HOH B 4 2004 2004 HOH HOH . 
D 4 HOH B 5 2005 2005 HOH HOH . 
D 4 HOH B 6 2006 2006 HOH HOH . 
D 4 HOH B 7 2007 2007 HOH HOH . 
D 4 HOH B 8 2008 2008 HOH HOH . 
D 4 HOH B 9 2009 2009 HOH HOH . 
D 4 HOH B 10 2010 2010 HOH HOH . 
D 4 HOH B 11 2011 2011 HOH HOH . 
D 4 HOH B 12 2012 2012 HOH HOH . 
D 4 HOH B 13 2013 2013 HOH HOH . 
D 4 HOH B 14 2014 2014 HOH HOH . 
D 4 HOH B 15 2015 2015 HOH HOH . 
D 4 HOH B 16 2016 2016 HOH HOH . 
D 4 HOH B 17 2017 2017 HOH HOH . 
D 4 HOH B 18 2018 2018 HOH HOH . 
D 4 HOH B 19 2019 2019 HOH HOH . 
D 4 HOH B 20 2020 2020 HOH HOH . 
D 4 HOH B 21 2021 2021 HOH HOH . 
D 4 HOH B 22 2022 2022 HOH HOH . 
D 4 HOH B 23 2023 2023 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . C 3 16.418 28.783 -0.876 1 113.09 ? PG ANP 1306 B 1 
HETATM 2 O O1G ANP . . . C 3 15.528 27.577 -1.11 1 113.01 ? O1G ANP 1306 B 1 
HETATM 3 O O2G ANP . . . C 3 15.676 30.126 -0.92 1 112.95 ? O2G ANP 1306 B 1 
HETATM 4 O O3G ANP . . . C 3 17.332 28.59 0.308 1 113.49 ? O3G ANP 1306 B 1 
HETATM 5 P PB ANP . . . C 3 19.28 28.727 -2.055 1 107.8 ? PB ANP 1306 B 1 
HETATM 6 O O1B ANP . . . C 3 19.638 27.536 -1.199 1 107.49 ? O1B ANP 1306 B 1 
HETATM 7 O O2B ANP . . . C 3 19.806 28.749 -3.485 1 107.98 ? O2B ANP 1306 B 1 
HETATM 8 N N3B ANP . . . C 3 17.534 28.738 -2.24 1 110.69 ? N3B ANP 1306 B 1 
HETATM 9 P PA ANP . . . C 3 21.172 30.818 -1.088 1 103.9 ? PA ANP 1306 B 1 
HETATM 10 O O1A ANP . . . C 3 22.19 30.153 -2.003 1 103.08 ? O1A ANP 1306 B 1 
HETATM 11 O O2A ANP . . . C 3 21.508 31.051 0.389 1 102.63 ? O2A ANP 1306 B 1 
HETATM 12 O O3A ANP . . . C 3 19.705 30.089 -1.246 1 105.96 ? O3A ANP 1306 B 1 
HETATM 13 O O5' ANP . . . C 3 20.861 32.295 -1.681 1 100.49 ? O5' ANP 1306 B 1 
HETATM 14 C C5' ANP . . . C 3 20.373 32.535 -3.012 1 95.21 ? C5' ANP 1306 B 1 
HETATM 15 C C4' ANP . . . C 3 21.068 33.755 -3.635 1 91.65 ? C4' ANP 1306 B 1 
HETATM 16 O O4' ANP . . . C 3 20.796 34.991 -2.953 1 89.55 ? O4' ANP 1306 B 1 
HETATM 17 C C3' ANP . . . C 3 22.593 33.67 -3.629 1 89.29 ? C3' ANP 1306 B 1 
HETATM 18 O O3' ANP . . . C 3 23.085 32.827 -4.666 1 88.56 ? O3' ANP 1306 B 1 
HETATM 19 C C2' ANP . . . C 3 23.078 35.12 -3.717 1 87.85 ? C2' ANP 1306 B 1 
HETATM 20 O O2' ANP . . . C 3 23.471 35.597 -5.014 1 87.14 ? O2' ANP 1306 B 1 
HETATM 21 C C1' ANP . . . C 3 21.882 35.922 -3.215 1 86.64 ? C1' ANP 1306 B 1 
HETATM 22 N N9 ANP . . . C 3 22.381 36.683 -2.026 1 85.8 ? N9 ANP 1306 B 1 
HETATM 23 C C8 ANP . . . C 3 22.886 37.946 -2.067 1 85.12 ? C8 ANP 1306 B 1 
HETATM 24 N N7 ANP . . . C 3 23.263 38.354 -0.831 1 84.52 ? N7 ANP 1306 B 1 
HETATM 25 C C5 ANP . . . C 3 23.002 37.331 -0.005 1 84.16 ? C5 ANP 1306 B 1 
HETATM 26 C C6 ANP . . . C 3 23.179 37.099 1.424 1 84.82 ? C6 ANP 1306 B 1 
HETATM 27 N N6 ANP . . . C 3 23.714 38.091 2.18 1 84.71 ? N6 ANP 1306 B 1 
HETATM 28 N N1 ANP . . . C 3 22.782 35.875 1.898 1 85.89 ? N1 ANP 1306 B 1 
HETATM 29 C C2 ANP . . . C 3 22.248 34.877 1.142 1 84.79 ? C2 ANP 1306 B 1 
HETATM 30 N N3 ANP . . . C 3 22.072 35.04 -0.175 1 84.08 ? N3 ANP 1306 B 1 
HETATM 31 C C4 ANP . . . C 3 22.43 36.214 -0.778 1 84.36 ? C4 ANP 1306 B 1 
#
_model_server_stats.io_time_ms              74 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#