data_2BZK # _model_server_result.job_id fwE_lWodF_kx39VQrxTUhQ _model_server_result.datetime_utc '2024-12-04 17:18:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2bzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1306}' # _entry.id 2BZK # _exptl.entry_id 2BZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2BZK _cell.length_a 97.889 _cell.length_b 97.889 _cell.length_c 80.493 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2BZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2BZK _atom_sites.fract_transf_matrix[1][1] 0.010216 _atom_sites.fract_transf_matrix[1][2] 0.005898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011796 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP B 1 1306 1306 ANP ANP . D 4 HOH B 1 2001 2001 HOH HOH . D 4 HOH B 2 2002 2002 HOH HOH . D 4 HOH B 3 2003 2003 HOH HOH . D 4 HOH B 4 2004 2004 HOH HOH . D 4 HOH B 5 2005 2005 HOH HOH . D 4 HOH B 6 2006 2006 HOH HOH . D 4 HOH B 7 2007 2007 HOH HOH . D 4 HOH B 8 2008 2008 HOH HOH . D 4 HOH B 9 2009 2009 HOH HOH . D 4 HOH B 10 2010 2010 HOH HOH . D 4 HOH B 11 2011 2011 HOH HOH . D 4 HOH B 12 2012 2012 HOH HOH . D 4 HOH B 13 2013 2013 HOH HOH . D 4 HOH B 14 2014 2014 HOH HOH . D 4 HOH B 15 2015 2015 HOH HOH . D 4 HOH B 16 2016 2016 HOH HOH . D 4 HOH B 17 2017 2017 HOH HOH . D 4 HOH B 18 2018 2018 HOH HOH . D 4 HOH B 19 2019 2019 HOH HOH . D 4 HOH B 20 2020 2020 HOH HOH . D 4 HOH B 21 2021 2021 HOH HOH . D 4 HOH B 22 2022 2022 HOH HOH . D 4 HOH B 23 2023 2023 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 16.418 28.783 -0.876 1 113.09 ? PG ANP 1306 B 1 HETATM 2 O O1G ANP . . . C 3 15.528 27.577 -1.11 1 113.01 ? O1G ANP 1306 B 1 HETATM 3 O O2G ANP . . . C 3 15.676 30.126 -0.92 1 112.95 ? O2G ANP 1306 B 1 HETATM 4 O O3G ANP . . . C 3 17.332 28.59 0.308 1 113.49 ? O3G ANP 1306 B 1 HETATM 5 P PB ANP . . . C 3 19.28 28.727 -2.055 1 107.8 ? PB ANP 1306 B 1 HETATM 6 O O1B ANP . . . C 3 19.638 27.536 -1.199 1 107.49 ? O1B ANP 1306 B 1 HETATM 7 O O2B ANP . . . C 3 19.806 28.749 -3.485 1 107.98 ? O2B ANP 1306 B 1 HETATM 8 N N3B ANP . . . C 3 17.534 28.738 -2.24 1 110.69 ? N3B ANP 1306 B 1 HETATM 9 P PA ANP . . . C 3 21.172 30.818 -1.088 1 103.9 ? PA ANP 1306 B 1 HETATM 10 O O1A ANP . . . C 3 22.19 30.153 -2.003 1 103.08 ? O1A ANP 1306 B 1 HETATM 11 O O2A ANP . . . C 3 21.508 31.051 0.389 1 102.63 ? O2A ANP 1306 B 1 HETATM 12 O O3A ANP . . . C 3 19.705 30.089 -1.246 1 105.96 ? O3A ANP 1306 B 1 HETATM 13 O O5' ANP . . . C 3 20.861 32.295 -1.681 1 100.49 ? O5' ANP 1306 B 1 HETATM 14 C C5' ANP . . . C 3 20.373 32.535 -3.012 1 95.21 ? C5' ANP 1306 B 1 HETATM 15 C C4' ANP . . . C 3 21.068 33.755 -3.635 1 91.65 ? C4' ANP 1306 B 1 HETATM 16 O O4' ANP . . . C 3 20.796 34.991 -2.953 1 89.55 ? O4' ANP 1306 B 1 HETATM 17 C C3' ANP . . . C 3 22.593 33.67 -3.629 1 89.29 ? C3' ANP 1306 B 1 HETATM 18 O O3' ANP . . . C 3 23.085 32.827 -4.666 1 88.56 ? O3' ANP 1306 B 1 HETATM 19 C C2' ANP . . . C 3 23.078 35.12 -3.717 1 87.85 ? C2' ANP 1306 B 1 HETATM 20 O O2' ANP . . . C 3 23.471 35.597 -5.014 1 87.14 ? O2' ANP 1306 B 1 HETATM 21 C C1' ANP . . . C 3 21.882 35.922 -3.215 1 86.64 ? C1' ANP 1306 B 1 HETATM 22 N N9 ANP . . . C 3 22.381 36.683 -2.026 1 85.8 ? N9 ANP 1306 B 1 HETATM 23 C C8 ANP . . . C 3 22.886 37.946 -2.067 1 85.12 ? C8 ANP 1306 B 1 HETATM 24 N N7 ANP . . . C 3 23.263 38.354 -0.831 1 84.52 ? N7 ANP 1306 B 1 HETATM 25 C C5 ANP . . . C 3 23.002 37.331 -0.005 1 84.16 ? C5 ANP 1306 B 1 HETATM 26 C C6 ANP . . . C 3 23.179 37.099 1.424 1 84.82 ? C6 ANP 1306 B 1 HETATM 27 N N6 ANP . . . C 3 23.714 38.091 2.18 1 84.71 ? N6 ANP 1306 B 1 HETATM 28 N N1 ANP . . . C 3 22.782 35.875 1.898 1 85.89 ? N1 ANP 1306 B 1 HETATM 29 C C2 ANP . . . C 3 22.248 34.877 1.142 1 84.79 ? C2 ANP 1306 B 1 HETATM 30 N N3 ANP . . . C 3 22.072 35.04 -0.175 1 84.08 ? N3 ANP 1306 B 1 HETATM 31 C C4 ANP . . . C 3 22.43 36.214 -0.778 1 84.36 ? C4 ANP 1306 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 31 #