data_2C05
#
_model_server_result.job_id            LlgMgXz0WnEu5Ykf7bub6w 
_model_server_result.datetime_utc      '2024-11-25 05:54:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c05 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1136}' 
#
_entry.id    2C05 
#
_exptl.entry_id    2C05 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              836.387 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2C05 
_cell.length_a            52.42 
_cell.length_b            56.53 
_cell.length_c            41.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C05 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 24 A CYS 23 1_555 A SG CYS 84 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 38 A CYS 37 1_555 A SG CYS 97 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf3 A SG CYS 56 A CYS 55 1_555 A SG CYS 112 A CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 63 A CYS 62 1_555 A SG CYS 72 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C20 H28 N10 O19 P4' 
_chem_comp.formula_weight    836.387 
_chem_comp.id                B4P 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "BIS(ADENOSINE)-5'-TETRAPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A B4P doub 77 n n 
PA O2A B4P sing 78 n n 
PA O3A B4P sing 79 n n 
PA O5E B4P sing 80 n n 
O2A HOA2 B4P sing 81 n n 
O3A PB B4P sing 82 n n 
PB O1B B4P doub 83 n n 
PB O2B B4P sing 84 n n 
PB O3B B4P sing 85 n n 
O2B HOB2 B4P sing 86 n n 
O3B PG B4P sing 87 n n 
PG O1G B4P doub 88 n n 
PG O2G B4P sing 89 n n 
PG O3G B4P sing 90 n n 
O2G HOG2 B4P sing 91 n n 
O3G PD B4P sing 92 n n 
PD O1D B4P doub 93 n n 
PD O2D B4P sing 94 n n 
PD O5F B4P sing 95 n n 
O2D HOD2 B4P sing 96 n n 
O5E C5E B4P sing 97 n n 
C5E C4E B4P sing 98 n n 
C5E H51A B4P sing 99 n n 
C5E H52A B4P sing 100 n n 
C4E O4E B4P sing 101 n n 
C4E C3E B4P sing 102 n n 
C4E H4E B4P sing 103 n n 
O4E C1E B4P sing 104 n n 
C3E O3E B4P sing 105 n n 
C3E C2E B4P sing 106 n n 
C3E H3E B4P sing 107 n n 
O3E HO3A B4P sing 108 n n 
C2E O2E B4P sing 109 n n 
C2E C1E B4P sing 110 n n 
C2E H2E B4P sing 111 n n 
O2E HO2A B4P sing 112 n n 
C1E N9A B4P sing 113 n n 
C1E H1E B4P sing 114 n n 
N9A C8A B4P sing 115 n y 
N9A C4A B4P sing 116 n y 
C8A N7A B4P doub 117 n y 
C8A H8A B4P sing 118 n n 
N7A C5A B4P sing 119 n y 
C5A C6A B4P sing 120 n y 
C5A C4A B4P doub 121 n y 
C6A N6A B4P sing 122 n n 
C6A N1A B4P doub 123 n y 
N6A H61A B4P sing 124 n n 
N6A H62A B4P sing 125 n n 
N1A C2A B4P sing 126 n y 
C2A N3A B4P doub 127 n y 
C2A H2A B4P sing 128 n n 
N3A C4A B4P sing 129 n y 
O5F C5F B4P sing 130 n n 
C5F C4F B4P sing 131 n n 
C5F H51B B4P sing 132 n n 
C5F H52B B4P sing 133 n n 
C4F O4F B4P sing 134 n n 
C4F C3F B4P sing 135 n n 
C4F H4F B4P sing 136 n n 
O4F C1F B4P sing 137 n n 
C3F O3F B4P sing 138 n n 
C3F C2F B4P sing 139 n n 
C3F H3F B4P sing 140 n n 
O3F HO3B B4P sing 141 n n 
C2F O2F B4P sing 142 n n 
C2F C1F B4P sing 143 n n 
C2F H2F B4P sing 144 n n 
O2F HO2B B4P sing 145 n n 
C1F N9B B4P sing 146 n n 
C1F H1F B4P sing 147 n n 
N9B C8B B4P sing 148 n y 
N9B C4B B4P sing 149 n y 
C8B N7B B4P doub 150 n y 
C8B H8B B4P sing 151 n n 
N7B C5B B4P sing 152 n y 
C5B C6B B4P sing 153 n y 
C5B C4B B4P doub 154 n y 
C6B N6B B4P sing 155 n n 
C6B N1B B4P doub 156 n y 
N6B H61B B4P sing 157 n n 
N6B H62B B4P sing 158 n n 
N1B C2B B4P sing 159 n y 
C2B N3B B4P doub 160 n y 
C2B H2B B4P sing 161 n n 
N3B C4B B4P sing 162 n y 
#
_atom_sites.entry_id                     2C05 
_atom_sites.fract_transf_matrix[1][1]    0.019077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01769 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024027 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACY A 1 1135 1135 ACY ACY . 
C 3 B4P A 1 1136 1136 B4P B4P . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
D 4 HOH A 65 2065 2065 HOH HOH . 
D 4 HOH A 66 2066 2066 HOH HOH . 
D 4 HOH A 67 2067 2067 HOH HOH . 
D 4 HOH A 68 2068 2068 HOH HOH . 
D 4 HOH A 69 2069 2069 HOH HOH . 
D 4 HOH A 70 2070 2070 HOH HOH . 
D 4 HOH A 71 2071 2071 HOH HOH . 
D 4 HOH A 72 2072 2072 HOH HOH . 
D 4 HOH A 73 2073 2073 HOH HOH . 
D 4 HOH A 74 2074 2074 HOH HOH . 
D 4 HOH A 75 2075 2075 HOH HOH . 
D 4 HOH A 76 2076 2076 HOH HOH . 
D 4 HOH A 77 2077 2077 HOH HOH . 
D 4 HOH A 78 2078 2078 HOH HOH . 
D 4 HOH A 79 2079 2079 HOH HOH . 
D 4 HOH A 80 2080 2080 HOH HOH . 
D 4 HOH A 81 2081 2081 HOH HOH . 
D 4 HOH A 82 2082 2082 HOH HOH . 
D 4 HOH A 83 2083 2083 HOH HOH . 
D 4 HOH A 84 2084 2084 HOH HOH . 
D 4 HOH A 85 2085 2085 HOH HOH . 
D 4 HOH A 86 2086 2086 HOH HOH . 
D 4 HOH A 87 2087 2087 HOH HOH . 
D 4 HOH A 88 2088 2088 HOH HOH . 
D 4 HOH A 89 2089 2089 HOH HOH . 
D 4 HOH A 90 2090 2090 HOH HOH . 
D 4 HOH A 91 2091 2091 HOH HOH . 
D 4 HOH A 92 2092 2092 HOH HOH . 
D 4 HOH A 93 2093 2093 HOH HOH . 
D 4 HOH A 94 2094 2094 HOH HOH . 
D 4 HOH A 95 2095 2095 HOH HOH . 
D 4 HOH A 96 2096 2096 HOH HOH . 
D 4 HOH A 97 2097 2097 HOH HOH . 
D 4 HOH A 98 2098 2098 HOH HOH . 
D 4 HOH A 99 2099 2099 HOH HOH . 
D 4 HOH A 100 2100 2100 HOH HOH . 
D 4 HOH A 101 2101 2101 HOH HOH . 
D 4 HOH A 102 2102 2102 HOH HOH . 
D 4 HOH A 103 2103 2103 HOH HOH . 
D 4 HOH A 104 2104 2104 HOH HOH . 
D 4 HOH A 105 2105 2105 HOH HOH . 
D 4 HOH A 106 2106 2106 HOH HOH . 
D 4 HOH A 107 2107 2107 HOH HOH . 
D 4 HOH A 108 2108 2108 HOH HOH . 
D 4 HOH A 109 2109 2109 HOH HOH . 
D 4 HOH A 110 2110 2110 HOH HOH . 
D 4 HOH A 111 2111 2111 HOH HOH . 
D 4 HOH A 112 2112 2112 HOH HOH . 
D 4 HOH A 113 2113 2113 HOH HOH . 
D 4 HOH A 114 2114 2114 HOH HOH . 
D 4 HOH A 115 2115 2115 HOH HOH . 
D 4 HOH A 116 2116 2116 HOH HOH . 
D 4 HOH A 117 2117 2117 HOH HOH . 
D 4 HOH A 118 2118 2118 HOH HOH . 
D 4 HOH A 119 2119 2119 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3A B4P . . . C 3 16.842 12.604 6.457 1 99.79 ? O3A B4P 1136 A 1 
HETATM 2 P PB B4P . . . C 3 16.162 12.538 7.85 1 97.24 ? PB B4P 1136 A 1 
HETATM 3 O O1B B4P . . . C 3 15.993 11.124 8.246 1 96.56 ? O1B B4P 1136 A 1 
HETATM 4 O O2B B4P . . . C 3 17.028 13.154 8.844 1 97.34 ? O2B B4P 1136 A 1 
HETATM 5 O O3B B4P . . . C 3 14.812 13.247 7.706 1 93.63 ? O3B B4P 1136 A 1 
HETATM 6 P PG B4P . . . C 3 13.908 14.219 8.503 1 90.15 ? PG B4P 1136 A 1 
HETATM 7 O O1G B4P . . . C 3 13.757 15.456 7.759 1 89.75 ? O1G B4P 1136 A 1 
HETATM 8 O O2G B4P . . . C 3 14.589 14.491 9.791 1 89.95 ? O2G B4P 1136 A 1 
HETATM 9 O O3G B4P . . . C 3 12.459 13.928 8.689 1 84.63 ? O3G B4P 1136 A 1 
HETATM 10 P PD B4P . . . C 3 11.644 13.864 9.918 1 78.69 ? PD B4P 1136 A 1 
HETATM 11 O O1D B4P . . . C 3 11.689 15.066 10.743 1 80.22 ? O1D B4P 1136 A 1 
HETATM 12 O O2D B4P . . . C 3 10.242 13.555 9.605 1 79.19 ? O2D B4P 1136 A 1 
HETATM 13 O O5F B4P . . . C 3 12.257 12.513 10.648 1 75.82 ? O5F B4P 1136 A 1 
HETATM 14 C C5F B4P . . . C 3 12.039 12.13 12.071 1 70.78 ? C5F B4P 1136 A 1 
HETATM 15 C C4F B4P . . . C 3 12.773 10.811 12.339 1 68.28 ? C4F B4P 1136 A 1 
HETATM 16 O O4F B4P . . . C 3 11.849 9.797 12.743 1 65.81 ? O4F B4P 1136 A 1 
HETATM 17 C C3F B4P . . . C 3 13.551 10.134 11.194 1 67.12 ? C3F B4P 1136 A 1 
HETATM 18 O O3F B4P . . . C 3 14.814 10.746 10.989 1 67.82 ? O3F B4P 1136 A 1 
HETATM 19 C C2F B4P . . . C 3 13.541 8.629 11.628 1 65.64 ? C2F B4P 1136 A 1 
HETATM 20 O O2F B4P . . . C 3 14.714 8.291 12.408 1 66.15 ? O2F B4P 1136 A 1 
HETATM 21 C C1F B4P . . . C 3 12.221 8.445 12.391 1 63.63 ? C1F B4P 1136 A 1 
HETATM 22 N N9B B4P . . . C 3 11.113 7.729 11.589 1 58.8 ? N9B B4P 1136 A 1 
HETATM 23 C C8B B4P . . . C 3 11.035 7.364 10.265 1 55.85 ? C8B B4P 1136 A 1 
HETATM 24 N N7B B4P . . . C 3 9.868 6.754 10.028 1 54.15 ? N7B B4P 1136 A 1 
HETATM 25 C C5B B4P . . . C 3 9.216 6.731 11.181 1 52.18 ? C5B B4P 1136 A 1 
HETATM 26 C C6B B4P . . . C 3 7.908 6.188 11.498 1 49.27 ? C6B B4P 1136 A 1 
HETATM 27 N N6B B4P . . . C 3 7.074 5.583 10.647 1 43.11 ? N6B B4P 1136 A 1 
HETATM 28 N N1B B4P . . . C 3 7.476 6.315 12.847 1 49.22 ? N1B B4P 1136 A 1 
HETATM 29 C C2B B4P . . . C 3 8.223 6.918 13.852 1 51.42 ? C2B B4P 1136 A 1 
HETATM 30 N N3B B4P . . . C 3 9.461 7.425 13.519 1 52.93 ? N3B B4P 1136 A 1 
HETATM 31 C C4B B4P . . . C 3 9.982 7.348 12.213 1 55.16 ? C4B B4P 1136 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#