data_2C27 # _model_server_result.job_id RfFfyt_KGMhqBtVPrF2Ajg _model_server_result.datetime_utc '2024-10-10 04:17:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c27 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1312}' # _entry.id 2C27 # _exptl.entry_id 2C27 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.455 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.57 _cell.angle_gamma 90 _cell.entry_id 2C27 _cell.length_a 37.83 _cell.length_b 59.62 _cell.length_c 61.67 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C27 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H28 N2 O11 S' _chem_comp.formula_weight 444.455 _chem_comp.id MA8 _chem_comp.mon_nstd_flag n _chem_comp.name '(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '(2S,3R,5S,6S)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL 2-(L-CYSTEINYLAMINO)-2-DEOXY-ALPHA-L-GLUCOPYRANOSIDE;(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-alpha-D-glucoside;(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-D-glucoside;(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-(L-cysteinylamino)-2-deoxy-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C1 MA8 sing 382 n n O5 C5 MA8 sing 383 n n C1 O1 MA8 sing 384 n n C1 C2 MA8 sing 385 n n C1 H1 MA8 sing 386 n n C4 C5 MA8 sing 387 n n C4 O4 MA8 sing 388 n n C4 C3 MA8 sing 389 n n C4 H4 MA8 sing 390 n n C5 C6 MA8 sing 391 n n C5 H5 MA8 sing 392 n n O4 HO4 MA8 sing 393 n n O3 C3 MA8 sing 394 n n O3 HO3 MA8 sing 395 n n O1 C9 MA8 sing 396 n n N2 C2 MA8 sing 397 n n N2 C7 MA8 sing 398 n n N2 HN2 MA8 sing 399 n n C6 O6 MA8 sing 400 n n C6 H61 MA8 sing 401 n n C6 H62 MA8 sing 402 n n C2 C3 MA8 sing 403 n n C2 H2 MA8 sing 404 n n C3 H3 MA8 sing 405 n n O6 HO6 MA8 sing 406 n n C7A C8A MA8 sing 407 n n C7A C10 MA8 sing 408 n n C7A O10 MA8 sing 409 n n C7A H7 MA8 sing 410 n n C8A O9 MA8 sing 411 n n C8A C11 MA8 sing 412 n n C8A H8 MA8 sing 413 n n C9 C10 MA8 sing 414 n n C9 C12 MA8 sing 415 n n C9 H9 MA8 sing 416 n n C10 O8 MA8 sing 417 n n C10 H10 MA8 sing 418 n n O6A C12 MA8 sing 419 n n O6A HH MA8 sing 420 n n O7A C11 MA8 sing 421 n n O7A HI MA8 sing 422 n n O8 HG MA8 sing 423 n n O9 HF MA8 sing 424 n n C11 C12 MA8 sing 425 n n C11 H11 MA8 sing 426 n n C12 H12 MA8 sing 427 n n O10 HE MA8 sing 428 n n C7 O7 MA8 doub 429 n n C7 C8 MA8 sing 430 n n C8 N2A MA8 sing 431 n n C8 C15 MA8 sing 432 n n C8 H81 MA8 sing 433 n n N2A H2N1 MA8 sing 434 n n N2A H2N2 MA8 sing 435 n n C15 S1 MA8 sing 436 n n C15 H151 MA8 sing 437 n n C15 H152 MA8 sing 438 n n HS1 S1 MA8 sing 439 n n # _atom_sites.entry_id 2C27 _atom_sites.fract_transf_matrix[1][1] 0.026434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000725 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MA8 A 1 1312 1312 MA8 MA8 . C 3 ACO A 1 1313 1313 ACO ACO . D 4 COA A 1 1314 1314 COA COA . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . E 5 HOH A 145 2145 2145 HOH HOH . E 5 HOH A 146 2146 2146 HOH HOH . E 5 HOH A 147 2147 2147 HOH HOH . E 5 HOH A 148 2148 2148 HOH HOH . E 5 HOH A 149 2149 2149 HOH HOH . E 5 HOH A 150 2150 2150 HOH HOH . E 5 HOH A 151 2151 2151 HOH HOH . E 5 HOH A 152 2152 2152 HOH HOH . E 5 HOH A 153 2153 2153 HOH HOH . E 5 HOH A 154 2154 2154 HOH HOH . E 5 HOH A 155 2155 2155 HOH HOH . E 5 HOH A 156 2156 2156 HOH HOH . E 5 HOH A 157 2157 2157 HOH HOH . E 5 HOH A 158 2158 2158 HOH HOH . E 5 HOH A 159 2159 2159 HOH HOH . E 5 HOH A 160 2160 2160 HOH HOH . E 5 HOH A 161 2161 2161 HOH HOH . E 5 HOH A 162 2162 2162 HOH HOH . E 5 HOH A 163 2163 2163 HOH HOH . E 5 HOH A 164 2164 2164 HOH HOH . E 5 HOH A 165 2165 2165 HOH HOH . E 5 HOH A 166 2166 2166 HOH HOH . E 5 HOH A 167 2167 2167 HOH HOH . E 5 HOH A 168 2168 2168 HOH HOH . E 5 HOH A 169 2169 2169 HOH HOH . E 5 HOH A 170 2170 2170 HOH HOH . E 5 HOH A 171 2171 2171 HOH HOH . E 5 HOH A 172 2172 2172 HOH HOH . E 5 HOH A 173 2173 2173 HOH HOH . E 5 HOH A 174 2174 2174 HOH HOH . E 5 HOH A 175 2175 2175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 MA8 . . . B 2 4.148 5.088 16.141 1 12.44 ? O5 MA8 1312 A 1 HETATM 2 C C1 MA8 . . . B 2 4.467 4.346 17.367 1 10.65 ? C1 MA8 1312 A 1 HETATM 3 C C4 MA8 . . . B 2 3.067 6.966 17.385 1 13.27 ? C4 MA8 1312 A 1 HETATM 4 C C5 MA8 . . . B 2 3.008 5.973 16.203 1 10.93 ? C5 MA8 1312 A 1 HETATM 5 O O4 MA8 . . . B 2 1.787 7.66 17.484 1 16.38 ? O4 MA8 1312 A 1 HETATM 6 O O3 MA8 . . . B 2 3.434 7.041 19.751 1 16.01 ? O3 MA8 1312 A 1 HETATM 7 O O1 MA8 . . . B 2 3.384 3.408 17.643 1 11.85 ? O1 MA8 1312 A 1 HETATM 8 N N2 MA8 . . . B 2 4.937 4.591 19.755 1 12.6 ? N2 MA8 1312 A 1 HETATM 9 C C6 MA8 . . . B 2 2.916 6.688 14.869 1 12.87 ? C6 MA8 1312 A 1 HETATM 10 C C2 MA8 . . . B 2 4.593 5.325 18.485 1 13.1 ? C2 MA8 1312 A 1 HETATM 11 C C3 MA8 . . . B 2 3.289 6.146 18.652 1 12.98 ? C3 MA8 1312 A 1 HETATM 12 O O6 MA8 . . . B 2 2.743 5.729 13.859 1 14.59 ? O6 MA8 1312 A 1 HETATM 13 C C7A MA8 . . . B 2 2.533 1.142 14.781 1 14.62 ? C7A MA8 1312 A 1 HETATM 14 C C8A MA8 . . . B 2 2.262 -0.153 15.598 1 12.72 ? C8A MA8 1312 A 1 HETATM 15 C C9 MA8 . . . B 2 3.417 2.268 16.815 1 12.15 ? C9 MA8 1312 A 1 HETATM 16 C C10 MA8 . . . B 2 2.415 2.404 15.659 1 11.95 ? C10 MA8 1312 A 1 HETATM 17 O O6A MA8 . . . B 2 4.082 0.896 18.697 1 13.23 ? O6A MA8 1312 A 1 HETATM 18 O O7A MA8 . . . B 2 2.892 -1.412 17.57 1 14.27 ? O7A MA8 1312 A 1 HETATM 19 O O8 MA8 . . . B 2 1.065 2.537 16.256 1 12.93 ? O8 MA8 1312 A 1 HETATM 20 O O9 MA8 . . . B 2 2.482 -1.266 14.779 1 15.26 ? O9 MA8 1312 A 1 HETATM 21 C C11 MA8 . . . B 2 3.21 -0.252 16.81 1 13.56 ? C11 MA8 1312 A 1 HETATM 22 C C12 MA8 . . . B 2 3.092 0.995 17.665 1 13.17 ? C12 MA8 1312 A 1 HETATM 23 O O10 MA8 . . . B 2 1.632 1.228 13.666 1 15.1 ? O10 MA8 1312 A 1 HETATM 24 C C7 MA8 . . . B 2 5.936 5.042 20.561 1 17.6 ? C7 MA8 1312 A 1 HETATM 25 O O7 MA8 . . . B 2 6.783 5.786 20.102 1 15.85 ? O7 MA8 1312 A 1 HETATM 26 C C8 MA8 . . . B 2 6.103 4.39 21.947 1 15.89 ? C8 MA8 1312 A 1 HETATM 27 N N2A MA8 . . . B 2 7.168 3.402 21.861 1 16.18 ? N2A MA8 1312 A 1 HETATM 28 C C15 MA8 . . . B 2 6.552 5.446 22.984 1 19.58 ? C15 MA8 1312 A 1 HETATM 29 S S1 MA8 . . . B 2 8.277 6.083 22.5 1 21.07 ? S1 MA8 1312 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #