data_2C2G
#
_model_server_result.job_id            QrC0hzeb-jK8uUobYJIy5A 
_model_server_result.datetime_utc      '2024-11-26 01:49:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c2g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1163}' 
#
_entry.id    2C2G 
#
_exptl.entry_id    2C2G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         108.96 
_cell.angle_beta          102 
_cell.angle_gamma         107.36 
_cell.entry_id            2C2G 
_cell.length_a            57.626 
_cell.length_b            61.014 
_cell.length_c            76.678 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C2G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 163 A LYS 163 1_555 C C4A PLP . A PLP 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale2 B NZ LYS 163 B LYS 163 1_555 D C4A PLP . B PLP 1163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     2C2G 
_atom_sites.fract_transf_matrix[1][1]    0.017353 
_atom_sites.fract_transf_matrix[1][2]    0.005425 
_atom_sites.fract_transf_matrix[1][3]    0.006524 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017172 
_atom_sites.fract_transf_matrix[2][3]    0.007821 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014651 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 1163 1163 PLP PLP . 
D 2 PLP B 1 1163 1163 PLP PLP . 
E 3 HOH A 1 2001 2001 HOH HOH . 
E 3 HOH A 2 2002 2002 HOH HOH . 
E 3 HOH A 3 2003 2003 HOH HOH . 
E 3 HOH A 4 2004 2004 HOH HOH . 
E 3 HOH A 5 2005 2005 HOH HOH . 
E 3 HOH A 6 2006 2006 HOH HOH . 
E 3 HOH A 7 2007 2007 HOH HOH . 
E 3 HOH A 8 2008 2008 HOH HOH . 
E 3 HOH A 9 2009 2009 HOH HOH . 
E 3 HOH A 10 2010 2010 HOH HOH . 
E 3 HOH A 11 2011 2011 HOH HOH . 
E 3 HOH A 12 2012 2012 HOH HOH . 
E 3 HOH A 13 2013 2013 HOH HOH . 
E 3 HOH A 14 2014 2014 HOH HOH . 
E 3 HOH A 15 2015 2015 HOH HOH . 
E 3 HOH A 16 2016 2016 HOH HOH . 
E 3 HOH A 17 2017 2017 HOH HOH . 
E 3 HOH A 18 2018 2018 HOH HOH . 
E 3 HOH A 19 2019 2019 HOH HOH . 
E 3 HOH A 20 2020 2020 HOH HOH . 
E 3 HOH A 21 2021 2021 HOH HOH . 
E 3 HOH A 22 2022 2022 HOH HOH . 
E 3 HOH A 23 2023 2023 HOH HOH . 
E 3 HOH A 24 2024 2024 HOH HOH . 
E 3 HOH A 25 2025 2025 HOH HOH . 
E 3 HOH A 26 2026 2026 HOH HOH . 
E 3 HOH A 27 2027 2027 HOH HOH . 
E 3 HOH A 28 2028 2028 HOH HOH . 
E 3 HOH A 29 2029 2029 HOH HOH . 
E 3 HOH A 30 2030 2030 HOH HOH . 
E 3 HOH A 31 2031 2031 HOH HOH . 
E 3 HOH A 32 2032 2032 HOH HOH . 
E 3 HOH A 33 2033 2033 HOH HOH . 
E 3 HOH A 34 2034 2034 HOH HOH . 
E 3 HOH A 35 2035 2035 HOH HOH . 
E 3 HOH A 36 2036 2036 HOH HOH . 
E 3 HOH A 37 2037 2037 HOH HOH . 
E 3 HOH A 38 2038 2038 HOH HOH . 
E 3 HOH A 39 2039 2039 HOH HOH . 
E 3 HOH A 40 2040 2040 HOH HOH . 
E 3 HOH A 41 2041 2041 HOH HOH . 
E 3 HOH A 42 2042 2042 HOH HOH . 
E 3 HOH A 43 2043 2043 HOH HOH . 
E 3 HOH A 44 2044 2044 HOH HOH . 
E 3 HOH A 45 2045 2045 HOH HOH . 
E 3 HOH A 46 2046 2046 HOH HOH . 
E 3 HOH A 47 2047 2047 HOH HOH . 
E 3 HOH A 48 2048 2048 HOH HOH . 
E 3 HOH A 49 2049 2049 HOH HOH . 
E 3 HOH A 50 2050 2050 HOH HOH . 
E 3 HOH A 51 2051 2051 HOH HOH . 
E 3 HOH A 52 2052 2052 HOH HOH . 
E 3 HOH A 53 2053 2053 HOH HOH . 
E 3 HOH A 54 2054 2054 HOH HOH . 
E 3 HOH A 55 2055 2055 HOH HOH . 
E 3 HOH A 56 2056 2056 HOH HOH . 
E 3 HOH A 57 2057 2057 HOH HOH . 
E 3 HOH A 58 2058 2058 HOH HOH . 
E 3 HOH A 59 2059 2059 HOH HOH . 
E 3 HOH A 60 2060 2060 HOH HOH . 
E 3 HOH A 61 2061 2061 HOH HOH . 
E 3 HOH A 62 2062 2062 HOH HOH . 
E 3 HOH A 63 2063 2063 HOH HOH . 
E 3 HOH A 64 2064 2064 HOH HOH . 
E 3 HOH A 65 2065 2065 HOH HOH . 
E 3 HOH A 66 2066 2066 HOH HOH . 
E 3 HOH A 67 2067 2067 HOH HOH . 
E 3 HOH A 68 2068 2068 HOH HOH . 
E 3 HOH A 69 2069 2069 HOH HOH . 
E 3 HOH A 70 2070 2070 HOH HOH . 
E 3 HOH A 71 2071 2071 HOH HOH . 
E 3 HOH A 72 2072 2072 HOH HOH . 
F 3 HOH B 1 2001 2001 HOH HOH . 
F 3 HOH B 2 2002 2002 HOH HOH . 
F 3 HOH B 3 2003 2003 HOH HOH . 
F 3 HOH B 4 2004 2004 HOH HOH . 
F 3 HOH B 5 2005 2005 HOH HOH . 
F 3 HOH B 6 2006 2006 HOH HOH . 
F 3 HOH B 7 2007 2007 HOH HOH . 
F 3 HOH B 8 2008 2008 HOH HOH . 
F 3 HOH B 9 2009 2009 HOH HOH . 
F 3 HOH B 10 2010 2010 HOH HOH . 
F 3 HOH B 11 2011 2011 HOH HOH . 
F 3 HOH B 12 2012 2012 HOH HOH . 
F 3 HOH B 13 2013 2013 HOH HOH . 
F 3 HOH B 14 2014 2014 HOH HOH . 
F 3 HOH B 15 2015 2015 HOH HOH . 
F 3 HOH B 16 2016 2016 HOH HOH . 
F 3 HOH B 17 2017 2017 HOH HOH . 
F 3 HOH B 18 2018 2018 HOH HOH . 
F 3 HOH B 19 2019 2019 HOH HOH . 
F 3 HOH B 20 2020 2020 HOH HOH . 
F 3 HOH B 21 2021 2021 HOH HOH . 
F 3 HOH B 22 2022 2022 HOH HOH . 
F 3 HOH B 23 2023 2023 HOH HOH . 
F 3 HOH B 24 2024 2024 HOH HOH . 
F 3 HOH B 25 2025 2025 HOH HOH . 
F 3 HOH B 26 2026 2026 HOH HOH . 
F 3 HOH B 27 2027 2027 HOH HOH . 
F 3 HOH B 28 2028 2028 HOH HOH . 
F 3 HOH B 29 2029 2029 HOH HOH . 
F 3 HOH B 30 2030 2030 HOH HOH . 
F 3 HOH B 31 2031 2031 HOH HOH . 
F 3 HOH B 32 2032 2032 HOH HOH . 
F 3 HOH B 33 2033 2033 HOH HOH . 
F 3 HOH B 34 2034 2034 HOH HOH . 
F 3 HOH B 35 2035 2035 HOH HOH . 
F 3 HOH B 36 2036 2036 HOH HOH . 
F 3 HOH B 37 2037 2037 HOH HOH . 
F 3 HOH B 38 2038 2038 HOH HOH . 
F 3 HOH B 39 2039 2039 HOH HOH . 
F 3 HOH B 40 2040 2040 HOH HOH . 
F 3 HOH B 41 2041 2041 HOH HOH . 
F 3 HOH B 42 2042 2042 HOH HOH . 
F 3 HOH B 43 2043 2043 HOH HOH . 
F 3 HOH B 44 2044 2044 HOH HOH . 
F 3 HOH B 45 2045 2045 HOH HOH . 
F 3 HOH B 46 2046 2046 HOH HOH . 
F 3 HOH B 47 2047 2047 HOH HOH . 
F 3 HOH B 48 2048 2048 HOH HOH . 
F 3 HOH B 49 2049 2049 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 -9.809 -0.488 19.276 1 52.02 ? N1 PLP 1163 A 1 
HETATM 2 C C2 PLP . . . C 2 -8.669 -0.356 18.508 1 53.19 ? C2 PLP 1163 A 1 
HETATM 3 C C2A PLP . . . C 2 -7.32 -0.358 19.205 1 52.15 ? C2A PLP 1163 A 1 
HETATM 4 C C3 PLP . . . C 2 -8.822 -0.226 17.112 1 52.47 ? C3 PLP 1163 A 1 
HETATM 5 O O3 PLP . . . C 2 -7.851 -0.102 16.348 1 53.97 ? O3 PLP 1163 A 1 
HETATM 6 C C4 PLP . . . C 2 -10.111 -0.235 16.554 1 51.69 ? C4 PLP 1163 A 1 
HETATM 7 C C4A PLP . . . C 2 -10.286 -0.098 15.07 1 47.56 ? C4A PLP 1163 A 1 
HETATM 8 C C5 PLP . . . C 2 -11.26 -0.371 17.353 1 53.33 ? C5 PLP 1163 A 1 
HETATM 9 C C6 PLP . . . C 2 -11.085 -0.497 18.726 1 53.12 ? C6 PLP 1163 A 1 
HETATM 10 C C5A PLP . . . C 2 -12.647 -0.379 16.733 1 53.33 ? C5A PLP 1163 A 1 
HETATM 11 O O4P PLP . . . C 2 -12.969 -1.435 15.773 1 55.1 ? O4P PLP 1163 A 1 
HETATM 12 P P PLP . . . C 2 -14.251 -1.422 14.789 1 52.69 ? P PLP 1163 A 1 
HETATM 13 O O1P PLP . . . C 2 -14.281 -2.765 14.164 1 51.23 ? O1P PLP 1163 A 1 
HETATM 14 O O2P PLP . . . C 2 -14.004 -0.279 13.846 1 51.79 ? O2P PLP 1163 A 1 
HETATM 15 O O3P PLP . . . C 2 -15.294 -1.232 15.804 1 53.65 ? O3P PLP 1163 A 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#