data_2C37 # _model_server_result.job_id fgU1XANJYab9NWzSqNgkSw _model_server_result.datetime_utc '2024-10-19 08:36:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c37 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FB","auth_seq_id":303}' # _entry.id 2C37 # _exptl.entry_id 2C37 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C37 _cell.length_a 207.02 _cell.length_b 212.94 _cell.length_c 433.09 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C37 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS hexameric 6 author_and_software_defined_assembly 1 PQS hexameric 6 author_and_software_defined_assembly 2 PQS hexameric 6 author_and_software_defined_assembly 3 PQS hexameric 6 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 1 1 G,H,I,J,K,L,JA,KA,LA,MA,NA,OA,PA,QA,RA 2 1 M,N,O,P,Q,R,SA,TA,UA,VA,WA,XA,YA 3 1 S,T,U,V,W,X,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id FB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 Y O3' U5P . A U5P 401 1_555 BA P U5P . B U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale2 Z P U5P . A U5P 402 1_555 BA O3' U5P . B U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.624 ? covale ? covale3 Z O3' U5P . A U5P 402 1_555 CA P U5P . B U5P 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale4 EA O3' U5P . E U5P 401 1_555 FA P U5P . E U5P 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? covale ? covale5 FA O3' U5P . E U5P 402 1_555 GA P U5P . E U5P 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.61 ? covale ? covale6 GA O3' U5P . E U5P 403 1_555 IA P U5P . F U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? covale ? covale7 JA O3' U5P . G U5P 401 1_555 MA P U5P . H U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? covale ? covale8 KA P U5P . G U5P 402 1_555 MA O3' U5P . H U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale9 NA O3' U5P . I U5P 401 1_555 QA P U5P . J U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? covale ? covale10 OA P U5P . I U5P 402 1_555 QA O3' U5P . J U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale11 SA O3' U5P . M U5P 401 1_555 VA P U5P . N U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.62 ? covale ? covale12 TA P U5P . M U5P 402 1_555 VA O3' U5P . N U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale13 AB O3' U5P . U U5P 401 1_555 BB P U5P . U U5P 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? covale ? covale14 BB O3' U5P . U U5P 402 1_555 CB P U5P . U U5P 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale15 CB O3' U5P . U U5P 403 1_555 EB P U5P . V U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale16 GB O3' U5P . W U5P 401 1_555 HB P U5P . W U5P 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.617 ? covale ? covale17 HB O3' U5P . W U5P 402 1_555 IB P U5P . W U5P 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.603 ? covale ? covale18 IB O3' U5P . W U5P 403 1_555 KB P U5P . X U5P 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.621 ? metalc ? metalc1 CB O1P U5P . U U5P 403 1_555 FB NA NA . V NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc2 EB O2P U5P . V U5P 302 1_555 FB NA NA . V NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2C37 _atom_sites.fract_transf_matrix[1][1] 0.00483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004696 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002309 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Y 3 U5P A 1 401 401 U5P U5P . Z 3 U5P A 1 402 403 U5P U5P . AA 4 CL B 1 301 301 CL CL . BA 3 U5P B 1 302 402 U5P U5P . CA 3 U5P B 1 303 404 U5P U5P . DA 4 CL D 1 301 301 CL CL . EA 3 U5P E 1 401 401 U5P U5P . FA 3 U5P E 1 402 402 U5P U5P . GA 3 U5P E 1 403 403 U5P U5P . HA 4 CL F 1 301 301 CL CL . IA 3 U5P F 1 302 404 U5P U5P . JA 3 U5P G 1 401 401 U5P U5P . KA 3 U5P G 1 402 403 U5P U5P . LA 4 CL H 1 301 301 CL CL . MA 3 U5P H 1 302 402 U5P U5P . NA 3 U5P I 1 401 401 U5P U5P . OA 3 U5P I 1 402 403 U5P U5P . PA 4 CL J 1 301 301 CL CL . QA 3 U5P J 1 302 402 U5P U5P . RA 4 CL L 1 301 301 CL CL . SA 3 U5P M 1 401 401 U5P U5P . TA 3 U5P M 1 402 403 U5P U5P . UA 4 CL N 1 301 301 CL CL . VA 3 U5P N 1 302 402 U5P U5P . WA 5 RP5 N 1 303 405 RP5 RP5 . XA 4 CL P 1 301 301 CL CL . YA 4 CL R 1 301 301 CL CL . ZA 4 CL T 1 301 301 CL CL . AB 3 U5P U 1 401 401 U5P U5P . BB 3 U5P U 1 402 402 U5P U5P . CB 3 U5P U 1 403 403 U5P U5P . DB 4 CL V 1 301 301 CL CL . EB 3 U5P V 1 302 404 U5P U5P . FB 6 NA V 1 303 501 NA NA . GB 3 U5P W 1 401 401 U5P U5P . HB 3 U5P W 1 402 402 U5P U5P . IB 3 U5P W 1 403 403 U5P U5P . JB 4 CL X 1 301 301 CL CL . KB 3 U5P X 1 302 404 U5P U5P . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id FB _atom_site.label_entity_id 6 _atom_site.Cartn_x -44.877 _atom_site.Cartn_y -97.634 _atom_site.Cartn_z -88.873 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id V _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 88 _model_server_stats.query_time_ms 469 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #