data_2C4D
#
_model_server_result.job_id            rzII7cj7-UA6muYQGLboVA 
_model_server_result.datetime_utc      '2024-12-26 14:04:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c4d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    2C4D 
#
_exptl.entry_id    2C4D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2C4D 
_cell.length_a            106.767 
_cell.length_b            106.767 
_cell.length_c            86.622 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C4D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 343 A ASP 343 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc2 A OG1 THR 345 A THR 345 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? 
metalc ? metalc3 A OD1 ASP 347 A ASP 347 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.714 ? 
metalc ? metalc4 A O CYS 349 A CYS 349 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 A OD1 ASP 351 A ASP 351 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc6 A OD2 ASP 351 A ASP 351 1_555 B CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc7 B CA CA . A CA 500 1_555 M O HOH . A HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     2C4D 
_atom_sites.fract_transf_matrix[1][1]    0.009366 
_atom_sites.fract_transf_matrix[1][2]    0.005408 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011544 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 500 500 CA CA . 
C 3 NAG A 1 600 600 NAG NAG . 
D 3 NAG A 1 601 601 NAG NAG . 
E 3 NAG A 1 602 602 NAG NAG . 
F 3 NAG A 1 603 603 NAG NAG . 
G 3 NAG A 1 604 604 NAG NAG . 
H 3 NAG A 1 605 605 NAG NAG . 
I 4 SO4 A 1 700 700 SO4 SO4 . 
J 4 SO4 A 1 701 701 SO4 SO4 . 
K 4 SO4 A 1 702 702 SO4 SO4 . 
L 4 SO4 A 1 703 703 SO4 SO4 . 
M 5 HOH A 1 2001 2001 HOH HOH . 
M 5 HOH A 2 2002 2002 HOH HOH . 
M 5 HOH A 3 2003 2003 HOH HOH . 
M 5 HOH A 4 2004 2004 HOH HOH . 
M 5 HOH A 5 2005 2005 HOH HOH . 
M 5 HOH A 6 2006 2006 HOH HOH . 
M 5 HOH A 7 2007 2007 HOH HOH . 
M 5 HOH A 8 2008 2008 HOH HOH . 
M 5 HOH A 9 2009 2009 HOH HOH . 
M 5 HOH A 10 2010 2010 HOH HOH . 
M 5 HOH A 11 2011 2011 HOH HOH . 
M 5 HOH A 12 2012 2012 HOH HOH . 
M 5 HOH A 13 2013 2013 HOH HOH . 
M 5 HOH A 14 2014 2014 HOH HOH . 
M 5 HOH A 15 2015 2015 HOH HOH . 
M 5 HOH A 16 2016 2016 HOH HOH . 
M 5 HOH A 17 2017 2017 HOH HOH . 
M 5 HOH A 18 2018 2018 HOH HOH . 
M 5 HOH A 19 2019 2019 HOH HOH . 
M 5 HOH A 20 2020 2020 HOH HOH . 
M 5 HOH A 21 2021 2021 HOH HOH . 
M 5 HOH A 22 2022 2022 HOH HOH . 
M 5 HOH A 23 2023 2023 HOH HOH . 
M 5 HOH A 24 2024 2024 HOH HOH . 
M 5 HOH A 25 2025 2025 HOH HOH . 
M 5 HOH A 26 2026 2026 HOH HOH . 
M 5 HOH A 27 2027 2027 HOH HOH . 
M 5 HOH A 28 2028 2028 HOH HOH . 
M 5 HOH A 29 2029 2029 HOH HOH . 
M 5 HOH A 30 2030 2030 HOH HOH . 
M 5 HOH A 31 2031 2031 HOH HOH . 
M 5 HOH A 32 2032 2032 HOH HOH . 
M 5 HOH A 33 2033 2033 HOH HOH . 
M 5 HOH A 34 2034 2034 HOH HOH . 
M 5 HOH A 35 2035 2035 HOH HOH . 
M 5 HOH A 36 2036 2036 HOH HOH . 
M 5 HOH A 37 2037 2037 HOH HOH . 
M 5 HOH A 38 2038 2038 HOH HOH . 
M 5 HOH A 39 2039 2039 HOH HOH . 
M 5 HOH A 40 2040 2040 HOH HOH . 
M 5 HOH A 41 2041 2041 HOH HOH . 
M 5 HOH A 42 2042 2042 HOH HOH . 
M 5 HOH A 43 2043 2043 HOH HOH . 
M 5 HOH A 44 2044 2044 HOH HOH . 
M 5 HOH A 45 2045 2045 HOH HOH . 
M 5 HOH A 46 2046 2046 HOH HOH . 
M 5 HOH A 47 2047 2047 HOH HOH . 
M 5 HOH A 48 2048 2048 HOH HOH . 
M 5 HOH A 49 2049 2049 HOH HOH . 
M 5 HOH A 50 2050 2050 HOH HOH . 
M 5 HOH A 51 2051 2051 HOH HOH . 
M 5 HOH A 52 2052 2052 HOH HOH . 
M 5 HOH A 53 2053 2053 HOH HOH . 
M 5 HOH A 54 2054 2054 HOH HOH . 
M 5 HOH A 55 2055 2055 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 -61.928 46.588 -4.771 1 49.2 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . D 3 -60.468 46.61 -4.3 1 51.81 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . D 3 -60.527 46.937 -2.795 1 51.53 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . D 3 -61.178 48.312 -2.645 1 51.44 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . D 3 -62.385 48.518 -3.586 1 51.83 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . D 3 -62.636 50.014 -3.706 1 51.82 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . D 3 -58.927 45.348 -5.769 1 49.29 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . D 3 -58.4 44.034 -6.198 1 50.42 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . D 3 -59.673 45.416 -4.667 1 51.3 ? N2 NAG 601 A 1 
HETATM 10 O O1 NAG . . . D 3 -61.99 46.026 -6.029 1 49.8 ? O1 NAG 601 A 1 
HETATM 11 O O3 NAG . . . D 3 -59.259 46.927 -2.157 1 51.72 ? O3 NAG 601 A 1 
HETATM 12 O O4 NAG . . . D 3 -61.621 48.494 -1.321 1 48.53 ? O4 NAG 601 A 1 
HETATM 13 O O5 NAG . . . D 3 -62.327 47.916 -4.882 1 47.01 ? O5 NAG 601 A 1 
HETATM 14 O O6 NAG . . . D 3 -63.972 50.061 -4.144 1 52.48 ? O6 NAG 601 A 1 
HETATM 15 O O7 NAG . . . D 3 -58.632 46.302 -6.442 1 50.51 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#