data_2C5B # _model_server_result.job_id yDSxzKFFbP1pJcznuoWIUQ _model_server_result.datetime_utc '2024-11-12 19:31:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":600}' # _entry.id 2C5B # _exptl.entry_id 2C5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.211 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHIONINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C5B _cell.length_a 76.153 _cell.length_b 129.669 _cell.length_c 183.165 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -91.5825 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C5 H11 N O2 S' _chem_comp.formula_weight 149.211 _chem_comp.id MET _chem_comp.mon_nstd_flag y _chem_comp.name METHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA MET sing 250 n n N H MET sing 251 n n N H2 MET sing 252 n n CA C MET sing 253 n n CA CB MET sing 254 n n CA HA MET sing 255 n n C O MET doub 256 n n C OXT MET sing 257 n n CB CG MET sing 258 n n CB HB2 MET sing 259 n n CB HB3 MET sing 260 n n CG SD MET sing 261 n n CG HG2 MET sing 262 n n CG HG3 MET sing 263 n n SD CE MET sing 264 n n CE HE1 MET sing 265 n n CE HE2 MET sing 266 n n CE HE3 MET sing 267 n n OXT HXT MET sing 268 n n # _atom_sites.entry_id 2C5B _atom_sites.fract_transf_matrix[1][1] 0.013131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MET A 1 600 600 MET MET . E 3 5F1 A 1 500 500 5F1 5F1 . F 2 MET B 1 600 600 MET MET . G 3 5F1 B 1 500 500 5F1 5F1 . H 2 MET C 1 600 600 MET MET . I 3 5F1 C 1 500 500 5F1 5F1 . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . J 4 HOH A 20 2020 2020 HOH HOH . J 4 HOH A 21 2021 2021 HOH HOH . J 4 HOH A 22 2022 2022 HOH HOH . J 4 HOH A 23 2023 2023 HOH HOH . J 4 HOH A 24 2024 2024 HOH HOH . J 4 HOH A 25 2025 2025 HOH HOH . J 4 HOH A 26 2026 2026 HOH HOH . J 4 HOH A 27 2027 2027 HOH HOH . J 4 HOH A 28 2028 2028 HOH HOH . J 4 HOH A 29 2029 2029 HOH HOH . J 4 HOH A 30 2030 2030 HOH HOH . J 4 HOH A 31 2031 2031 HOH HOH . J 4 HOH A 32 2032 2032 HOH HOH . J 4 HOH A 33 2033 2033 HOH HOH . J 4 HOH A 34 2034 2034 HOH HOH . J 4 HOH A 35 2035 2035 HOH HOH . J 4 HOH A 36 2036 2036 HOH HOH . J 4 HOH A 37 2037 2037 HOH HOH . J 4 HOH A 38 2038 2038 HOH HOH . J 4 HOH A 39 2039 2039 HOH HOH . J 4 HOH A 40 2040 2040 HOH HOH . J 4 HOH A 41 2041 2041 HOH HOH . J 4 HOH A 42 2042 2042 HOH HOH . J 4 HOH A 43 2043 2043 HOH HOH . J 4 HOH A 44 2044 2044 HOH HOH . J 4 HOH A 45 2045 2045 HOH HOH . J 4 HOH A 46 2046 2046 HOH HOH . J 4 HOH A 47 2047 2047 HOH HOH . J 4 HOH A 48 2048 2048 HOH HOH . J 4 HOH A 49 2049 2049 HOH HOH . J 4 HOH A 50 2050 2050 HOH HOH . J 4 HOH A 51 2051 2051 HOH HOH . J 4 HOH A 52 2052 2052 HOH HOH . J 4 HOH A 53 2053 2053 HOH HOH . J 4 HOH A 54 2054 2054 HOH HOH . J 4 HOH A 55 2055 2055 HOH HOH . J 4 HOH A 56 2056 2056 HOH HOH . J 4 HOH A 57 2057 2057 HOH HOH . J 4 HOH A 58 2058 2058 HOH HOH . J 4 HOH A 59 2059 2059 HOH HOH . J 4 HOH A 60 2060 2060 HOH HOH . J 4 HOH A 61 2061 2061 HOH HOH . J 4 HOH A 62 2062 2062 HOH HOH . J 4 HOH A 63 2063 2063 HOH HOH . J 4 HOH A 64 2064 2064 HOH HOH . J 4 HOH A 65 2065 2065 HOH HOH . J 4 HOH A 66 2066 2066 HOH HOH . J 4 HOH A 67 2067 2067 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . K 4 HOH B 8 2008 2008 HOH HOH . K 4 HOH B 9 2009 2009 HOH HOH . K 4 HOH B 10 2010 2010 HOH HOH . K 4 HOH B 11 2011 2011 HOH HOH . K 4 HOH B 12 2012 2012 HOH HOH . K 4 HOH B 13 2013 2013 HOH HOH . K 4 HOH B 14 2014 2014 HOH HOH . K 4 HOH B 15 2015 2015 HOH HOH . K 4 HOH B 16 2016 2016 HOH HOH . K 4 HOH B 17 2017 2017 HOH HOH . K 4 HOH B 18 2018 2018 HOH HOH . K 4 HOH B 19 2019 2019 HOH HOH . K 4 HOH B 20 2020 2020 HOH HOH . K 4 HOH B 21 2021 2021 HOH HOH . K 4 HOH B 22 2022 2022 HOH HOH . K 4 HOH B 23 2023 2023 HOH HOH . K 4 HOH B 24 2024 2024 HOH HOH . K 4 HOH B 25 2025 2025 HOH HOH . K 4 HOH B 26 2026 2026 HOH HOH . K 4 HOH B 27 2027 2027 HOH HOH . K 4 HOH B 28 2028 2028 HOH HOH . K 4 HOH B 29 2029 2029 HOH HOH . K 4 HOH B 30 2030 2030 HOH HOH . K 4 HOH B 31 2031 2031 HOH HOH . K 4 HOH B 32 2032 2032 HOH HOH . K 4 HOH B 33 2033 2033 HOH HOH . K 4 HOH B 34 2034 2034 HOH HOH . K 4 HOH B 35 2035 2035 HOH HOH . K 4 HOH B 36 2036 2036 HOH HOH . K 4 HOH B 37 2037 2037 HOH HOH . K 4 HOH B 38 2038 2038 HOH HOH . K 4 HOH B 39 2039 2039 HOH HOH . K 4 HOH B 40 2040 2040 HOH HOH . K 4 HOH B 41 2041 2041 HOH HOH . K 4 HOH B 42 2042 2042 HOH HOH . K 4 HOH B 43 2043 2043 HOH HOH . K 4 HOH B 44 2044 2044 HOH HOH . K 4 HOH B 45 2045 2045 HOH HOH . K 4 HOH B 46 2046 2046 HOH HOH . K 4 HOH B 47 2047 2047 HOH HOH . K 4 HOH B 48 2048 2048 HOH HOH . K 4 HOH B 49 2049 2049 HOH HOH . K 4 HOH B 50 2050 2050 HOH HOH . K 4 HOH B 51 2051 2051 HOH HOH . K 4 HOH B 52 2052 2052 HOH HOH . K 4 HOH B 53 2053 2053 HOH HOH . K 4 HOH B 54 2054 2054 HOH HOH . K 4 HOH B 55 2055 2055 HOH HOH . K 4 HOH B 56 2056 2056 HOH HOH . K 4 HOH B 57 2057 2057 HOH HOH . K 4 HOH B 58 2058 2058 HOH HOH . K 4 HOH B 59 2059 2059 HOH HOH . K 4 HOH B 60 2060 2060 HOH HOH . K 4 HOH B 61 2061 2061 HOH HOH . K 4 HOH B 62 2062 2062 HOH HOH . K 4 HOH B 63 2063 2063 HOH HOH . K 4 HOH B 64 2064 2064 HOH HOH . K 4 HOH B 65 2065 2065 HOH HOH . K 4 HOH B 66 2066 2066 HOH HOH . K 4 HOH B 67 2067 2067 HOH HOH . K 4 HOH B 68 2068 2068 HOH HOH . L 4 HOH C 1 2001 2001 HOH HOH . L 4 HOH C 2 2002 2002 HOH HOH . L 4 HOH C 3 2003 2003 HOH HOH . L 4 HOH C 4 2004 2004 HOH HOH . L 4 HOH C 5 2005 2005 HOH HOH . L 4 HOH C 6 2006 2006 HOH HOH . L 4 HOH C 7 2007 2007 HOH HOH . L 4 HOH C 8 2008 2008 HOH HOH . L 4 HOH C 9 2009 2009 HOH HOH . L 4 HOH C 10 2010 2010 HOH HOH . L 4 HOH C 11 2011 2011 HOH HOH . L 4 HOH C 12 2012 2012 HOH HOH . L 4 HOH C 13 2013 2013 HOH HOH . L 4 HOH C 14 2014 2014 HOH HOH . L 4 HOH C 15 2015 2015 HOH HOH . L 4 HOH C 16 2016 2016 HOH HOH . L 4 HOH C 17 2017 2017 HOH HOH . L 4 HOH C 18 2018 2018 HOH HOH . L 4 HOH C 19 2019 2019 HOH HOH . L 4 HOH C 20 2020 2020 HOH HOH . L 4 HOH C 21 2021 2021 HOH HOH . L 4 HOH C 22 2022 2022 HOH HOH . L 4 HOH C 23 2023 2023 HOH HOH . L 4 HOH C 24 2024 2024 HOH HOH . L 4 HOH C 25 2025 2025 HOH HOH . L 4 HOH C 26 2026 2026 HOH HOH . L 4 HOH C 27 2027 2027 HOH HOH . L 4 HOH C 28 2028 2028 HOH HOH . L 4 HOH C 29 2029 2029 HOH HOH . L 4 HOH C 30 2030 2030 HOH HOH . L 4 HOH C 31 2031 2031 HOH HOH . L 4 HOH C 32 2032 2032 HOH HOH . L 4 HOH C 33 2033 2033 HOH HOH . L 4 HOH C 34 2034 2034 HOH HOH . L 4 HOH C 35 2035 2035 HOH HOH . L 4 HOH C 36 2036 2036 HOH HOH . L 4 HOH C 37 2037 2037 HOH HOH . L 4 HOH C 38 2038 2038 HOH HOH . L 4 HOH C 39 2039 2039 HOH HOH . L 4 HOH C 40 2040 2040 HOH HOH . L 4 HOH C 41 2041 2041 HOH HOH . L 4 HOH C 42 2042 2042 HOH HOH . L 4 HOH C 43 2043 2043 HOH HOH . L 4 HOH C 44 2044 2044 HOH HOH . L 4 HOH C 45 2045 2045 HOH HOH . L 4 HOH C 46 2046 2046 HOH HOH . L 4 HOH C 47 2047 2047 HOH HOH . L 4 HOH C 48 2048 2048 HOH HOH . L 4 HOH C 49 2049 2049 HOH HOH . L 4 HOH C 50 2050 2050 HOH HOH . L 4 HOH C 51 2051 2051 HOH HOH . L 4 HOH C 52 2052 2052 HOH HOH . L 4 HOH C 53 2053 2053 HOH HOH . L 4 HOH C 54 2054 2054 HOH HOH . L 4 HOH C 55 2055 2055 HOH HOH . L 4 HOH C 56 2056 2056 HOH HOH . L 4 HOH C 57 2057 2057 HOH HOH . L 4 HOH C 58 2058 2058 HOH HOH . L 4 HOH C 59 2059 2059 HOH HOH . L 4 HOH C 60 2060 2060 HOH HOH . L 4 HOH C 61 2061 2061 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N MET . . . H 2 3.962 51.68 -24.773 1 13.78 ? N MET 600 C 1 HETATM 2 C CA MET . . . H 2 3.14 52.776 -24.264 1 14.22 ? CA MET 600 C 1 HETATM 3 C C MET . . . H 2 3.968 53.868 -23.579 1 14.44 ? C MET 600 C 1 HETATM 4 O O MET . . . H 2 5.178 53.713 -23.365 1 14.6 ? O MET 600 C 1 HETATM 5 C CB MET . . . H 2 2.064 52.256 -23.299 1 14.06 ? CB MET 600 C 1 HETATM 6 C CG MET . . . H 2 0.965 53.258 -22.992 1 13.83 ? CG MET 600 C 1 HETATM 7 S SD MET . . . H 2 -0.284 53.4 -24.298 1 15.09 ? SD MET 600 C 1 HETATM 8 C CE MET . . . H 2 0.459 54.594 -25.419 1 15.05 ? CE MET 600 C 1 HETATM 9 O OXT MET . . . H 2 3.435 54.93 -23.225 1 14.36 ? OXT MET 600 C 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 381 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #