data_2C5D # _model_server_result.job_id H3RxUZIEvFiHWspwm9gKAg _model_server_result.datetime_utc '2025-02-05 03:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1219}' # _entry.id 2C5D # _exptl.entry_id 2C5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2C5D _cell.length_a 292.951 _cell.length_b 292.951 _cell.length_c 63.951 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n E NAG 1 E 1 NAG A 1678 NAG 3 n E NAG 2 E 2 NAG A 1679 NAG 3 n F NAG 1 F 1 NAG B 1678 NAG 3 n F NAG 2 F 2 NAG B 1679 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 27 A CYS 283 1_555 A SG CYS 314 A CYS 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 188 A CYS 444 1_555 A SG CYS 214 A CYS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 387 A CYS 643 1_555 A SG CYS 414 A CYS 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 B SG CYS 27 B CYS 283 1_555 B SG CYS 314 B CYS 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 B SG CYS 188 B CYS 444 1_555 B SG CYS 214 B CYS 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf6 B SG CYS 387 B CYS 643 1_555 B SG CYS 414 B CYS 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 C SG CYS 24 C CYS 49 1_555 C SG CYS 85 C CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 C SG CYS 128 C CYS 153 1_555 C SG CYS 173 C CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 D SG CYS 24 D CYS 49 1_555 D SG CYS 85 D CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 D SG CYS 128 D CYS 153 1_555 D SG CYS 173 D CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 164 A ASN 420 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 B ND2 ASN 164 B ASN 420 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale4 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? metalc ? metalc1 A OD1 ASP 73 A ASP 329 1_555 G CA CA . A CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc2 A OD2 ASP 73 A ASP 329 1_555 G CA CA . A CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc3 A O GLU 75 A GLU 331 1_555 G CA CA . A CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc4 A O ARG 184 A ARG 440 1_555 G CA CA . A CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 A OD2 ASP 400 A ASP 656 1_555 G CA CA . A CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? metalc ? metalc6 B OD2 ASP 73 B ASP 329 1_555 H CA CA . B CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc7 B OD1 ASP 73 B ASP 329 1_555 H CA CA . B CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc8 B O GLU 75 B GLU 331 1_555 H CA CA . B CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc9 B O ARG 184 B ARG 440 1_555 H CA CA . B CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc10 B OD2 ASP 400 B ASP 656 1_555 H CA CA . B CA 1677 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc11 C NE2 HIS 91 C HIS 116 1_555 I NI NI . C NI 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc12 C NE2 HIS 154 C HIS 179 1_554 K NI NI . D NI 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc13 I NI NI . C NI 1218 1_555 D NE2 HIS 154 D HIS 179 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc14 D NE2 HIS 91 D HIS 116 1_555 K NI NI . D NI 1218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.728 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 318 n n S O2 SO4 doub 319 n n S O3 SO4 sing 320 n n S O4 SO4 sing 321 n n # _atom_sites.entry_id 2C5D _atom_sites.fract_transf_matrix[1][1] 0.003414 _atom_sites.fract_transf_matrix[1][2] 0.001971 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015637 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 CA A 1 1677 1677 CA CA . H 4 CA B 1 1677 1677 CA CA . I 5 NI C 1 1218 1218 NI NI . J 6 SO4 C 1 1219 1219 SO4 SO4 . K 5 NI D 1 1218 1218 NI NI . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 6 142.628 91.894 115.346 1 104.53 ? S SO4 1219 C 1 HETATM 2 O O1 SO4 . . . J 6 143.44 91.268 114.279 1 103.25 ? O1 SO4 1219 C 1 HETATM 3 O O2 SO4 . . . J 6 141.584 90.94 115.776 1 103.66 ? O2 SO4 1219 C 1 HETATM 4 O O3 SO4 . . . J 6 141.991 93.143 114.863 1 103.22 ? O3 SO4 1219 C 1 HETATM 5 O O4 SO4 . . . J 6 143.506 92.225 116.488 1 104.63 ? O4 SO4 1219 C 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #