data_2C5W
#
_model_server_result.job_id            51LAbU30ra4xVFjrskPLkw 
_model_server_result.datetime_utc      '2024-12-26 14:42:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c5w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1370}' 
#
_entry.id    2C5W 
#
_exptl.entry_id    2C5W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              397.429 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "CEFOTAXIME,C3' cleaved,open,bound form" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2C5W 
_cell.length_a            112.376 
_cell.length_b            183.373 
_cell.length_c            54.85 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C5W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B OG SER 105 B SER 370 1_555 L C8 CEF . B CEF 1370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? 
metalc ? metalc1 B ND1 HIS 44 B HIS 309 1_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc2 B OE2 GLU 53 B GLU 318 6_554 F ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? 
metalc ? metalc3 B ND1 HIS 84 B HIS 349 1_555 G ZN ZN . B ZN 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc4 B ND1 HIS 130 B HIS 395 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc5 B OE1 GLU 132 B GLU 397 4_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc6 B OE2 GLU 132 B GLU 397 4_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc7 B OE1 GLU 170 B GLU 435 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc8 B OE2 GLU 170 B GLU 435 1_555 D ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc9 B ND1 HIS 195 B HIS 460 1_555 E ZN ZN . B ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc10 B NE2 HIS 238 B HIS 503 1_555 F ZN ZN . B ZN 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc11 B OE1 GLU 249 B GLU 514 6_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc12 B OE2 GLU 249 B GLU 514 6_555 C ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc13 B OE1 GLU 301 B GLU 566 3_655 E ZN ZN . B ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc14 B OE2 GLU 301 B GLU 566 3_655 E ZN ZN . B ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? 
metalc ? metalc15 B NE2 HIS 306 B HIS 571 3_655 E ZN ZN . B ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
metalc ? metalc16 C ZN ZN . B ZN 701 1_555 N O HOH . B HOH 2040 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc17 C ZN ZN . B ZN 701 1_555 N O HOH . B HOH 2063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc18 E ZN ZN . B ZN 703 1_555 N O HOH . B HOH 2064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
#
_chem_comp.formula           'C14 H15 N5 O5 S2' 
_chem_comp.formula_weight    397.429 
_chem_comp.id                CEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "CEFOTAXIME, C3' cleaved, open, bound form" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C1 CEF sing 70 n n 
S1 C6 CEF sing 71 n n 
C1 C2 CEF sing 72 n n 
C1 H1 CEF sing 73 n n 
C1 H2 CEF sing 74 n n 
C2 C3 CEF doub 75 n n 
C2 C4 CEF sing 76 n n 
C3 H3 CEF sing 77 n n 
C3 H4 CEF sing 78 n n 
C4 C5 CEF sing 79 n n 
C4 N1 CEF doub 80 n n 
C5 O1 CEF doub 81 n n 
C5 O2 CEF sing 82 n n 
O2 H5 CEF sing 83 n n 
N1 C6 CEF sing 84 n n 
C6 C7 CEF sing 85 n n 
C6 H6 CEF sing 86 n n 
C7 C8 CEF sing 87 n n 
C7 N2 CEF sing 88 n n 
C7 H7 CEF sing 89 n n 
C8 O3 CEF doub 90 n n 
C8 H8 CEF sing 91 n n 
N2 C9 CEF sing 92 n n 
N2 H9 CEF sing 93 n n 
C9 O4 CEF doub 94 n n 
C9 C10 CEF sing 95 n n 
C10 N3 CEF doub 96 z n 
C10 C12 CEF sing 97 n n 
N3 O5 CEF sing 98 n n 
O5 C11 CEF sing 99 n n 
C11 H10 CEF sing 100 n n 
C11 H11 CEF sing 101 n n 
C11 H12 CEF sing 102 n n 
C12 C13 CEF doub 103 n y 
C12 N5 CEF sing 104 n y 
C13 S2 CEF sing 105 n y 
C13 H13 CEF sing 106 n n 
S2 C14 CEF sing 107 n y 
C14 N4 CEF sing 108 n n 
C14 N5 CEF doub 109 n y 
N4 H14 CEF sing 110 n n 
N4 H15 CEF sing 111 n n 
#
_atom_sites.entry_id                     2C5W 
_atom_sites.fract_transf_matrix[1][1]    0.008899 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005453 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018232 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN B 1 701 701 ZN ZN . 
D 3 ZN B 1 702 702 ZN ZN . 
E 3 ZN B 1 703 703 ZN ZN . 
F 3 ZN B 1 704 704 ZN ZN . 
G 3 ZN B 1 705 705 ZN ZN . 
H 4 CL B 1 706 706 CL CL . 
I 4 CL B 1 707 707 CL CL . 
J 5 EDO B 1 711 711 EDO EDO . 
K 5 EDO B 1 712 712 EDO EDO . 
L 6 CEF B 1 1370 1370 CEF PCZ . 
M 7 HOH A 1 2001 2001 HOH HOH . 
N 7 HOH B 1 2001 2001 HOH HOH . 
N 7 HOH B 2 2002 2002 HOH HOH . 
N 7 HOH B 3 2003 2003 HOH HOH . 
N 7 HOH B 4 2004 2004 HOH HOH . 
N 7 HOH B 5 2005 2005 HOH HOH . 
N 7 HOH B 6 2006 2006 HOH HOH . 
N 7 HOH B 7 2007 2007 HOH HOH . 
N 7 HOH B 8 2008 2008 HOH HOH . 
N 7 HOH B 9 2009 2009 HOH HOH . 
N 7 HOH B 10 2010 2010 HOH HOH . 
N 7 HOH B 11 2011 2011 HOH HOH . 
N 7 HOH B 12 2012 2012 HOH HOH . 
N 7 HOH B 13 2013 2013 HOH HOH . 
N 7 HOH B 14 2014 2014 HOH HOH . 
N 7 HOH B 15 2015 2015 HOH HOH . 
N 7 HOH B 16 2016 2016 HOH HOH . 
N 7 HOH B 17 2017 2017 HOH HOH . 
N 7 HOH B 18 2018 2018 HOH HOH . 
N 7 HOH B 19 2019 2019 HOH HOH . 
N 7 HOH B 20 2020 2020 HOH HOH . 
N 7 HOH B 21 2021 2021 HOH HOH . 
N 7 HOH B 22 2022 2022 HOH HOH . 
N 7 HOH B 23 2023 2023 HOH HOH . 
N 7 HOH B 24 2024 2024 HOH HOH . 
N 7 HOH B 25 2025 2025 HOH HOH . 
N 7 HOH B 26 2026 2026 HOH HOH . 
N 7 HOH B 27 2027 2027 HOH HOH . 
N 7 HOH B 28 2028 2028 HOH HOH . 
N 7 HOH B 29 2029 2029 HOH HOH . 
N 7 HOH B 30 2030 2030 HOH HOH . 
N 7 HOH B 31 2031 2031 HOH HOH . 
N 7 HOH B 32 2032 2032 HOH HOH . 
N 7 HOH B 33 2033 2033 HOH HOH . 
N 7 HOH B 34 2034 2034 HOH HOH . 
N 7 HOH B 35 2035 2035 HOH HOH . 
N 7 HOH B 36 2036 2036 HOH HOH . 
N 7 HOH B 37 2037 2037 HOH HOH . 
N 7 HOH B 38 2038 2038 HOH HOH . 
N 7 HOH B 39 2039 2039 HOH HOH . 
N 7 HOH B 40 2040 2040 HOH HOH . 
N 7 HOH B 41 2041 2041 HOH HOH . 
N 7 HOH B 42 2042 2042 HOH HOH . 
N 7 HOH B 43 2043 2043 HOH HOH . 
N 7 HOH B 44 2044 2044 HOH HOH . 
N 7 HOH B 45 2045 2045 HOH HOH . 
N 7 HOH B 46 2046 2046 HOH HOH . 
N 7 HOH B 47 2047 2047 HOH HOH . 
N 7 HOH B 48 2048 2048 HOH HOH . 
N 7 HOH B 49 2049 2049 HOH HOH . 
N 7 HOH B 50 2050 2050 HOH HOH . 
N 7 HOH B 51 2051 2051 HOH HOH . 
N 7 HOH B 52 2052 2052 HOH HOH . 
N 7 HOH B 53 2053 2053 HOH HOH . 
N 7 HOH B 54 2054 2054 HOH HOH . 
N 7 HOH B 55 2055 2055 HOH HOH . 
N 7 HOH B 56 2056 2056 HOH HOH . 
N 7 HOH B 57 2057 2057 HOH HOH . 
N 7 HOH B 58 2058 2058 HOH HOH . 
N 7 HOH B 59 2059 2059 HOH HOH . 
N 7 HOH B 60 2060 2060 HOH HOH . 
N 7 HOH B 61 2061 2061 HOH HOH . 
N 7 HOH B 62 2062 2062 HOH HOH . 
N 7 HOH B 63 2063 2063 HOH HOH . 
N 7 HOH B 64 2064 2064 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 CEF . . . L 6 38.684 10.816 16.358 1 71.91 ? S1 CEF 1370 B 1 
HETATM 2 C C1 CEF . . . L 6 37.118 10.403 17.143 1 69.85 ? C1 CEF 1370 B 1 
HETATM 3 C C2 CEF . . . L 6 36.391 11.674 17.584 1 69 ? C2 CEF 1370 B 1 
HETATM 4 C C3 CEF . . . L 6 35.619 11.574 18.676 1 69.45 ? C3 CEF 1370 B 1 
HETATM 5 C C4 CEF . . . L 6 36.493 12.893 16.915 1 67.32 ? C4 CEF 1370 B 1 
HETATM 6 C C5 CEF . . . L 6 35.728 14.135 17.38 1 66.86 ? C5 CEF 1370 B 1 
HETATM 7 O O1 CEF . . . L 6 35.279 14.893 16.493 1 65.9 ? O1 CEF 1370 B 1 
HETATM 8 O O2 CEF . . . L 6 35.578 14.328 18.605 1 67.2 ? O2 CEF 1370 B 1 
HETATM 9 N N1 CEF . . . L 6 37.278 13.056 15.839 1 67.8 ? N1 CEF 1370 B 1 
HETATM 10 C C6 CEF . . . L 6 38.09 12.045 15.186 1 63.05 ? C6 CEF 1370 B 1 
HETATM 11 C C7 CEF . . . L 6 39.282 12.714 14.452 1 60.33 ? C7 CEF 1370 B 1 
HETATM 12 C C8 CEF . . . L 6 38.807 14.1 14.013 1 53.16 ? C8 CEF 1370 B 1 
HETATM 13 O O3 CEF . . . L 6 38.9 15.064 14.773 1 56.32 ? O3 CEF 1370 B 1 
HETATM 14 N N2 CEF . . . L 6 40.51 12.861 15.227 1 63.65 ? N2 CEF 1370 B 1 
HETATM 15 C C9 CEF . . . L 6 41.525 12.004 15.142 1 65.28 ? C9 CEF 1370 B 1 
HETATM 16 O O4 CEF . . . L 6 41.541 11 14.43 1 65.4 ? O4 CEF 1370 B 1 
HETATM 17 C C10 CEF . . . L 6 42.656 12.357 15.942 1 65.4 ? C10 CEF 1370 B 1 
HETATM 18 N N3 CEF . . . L 6 42.799 11.877 17.176 1 71.41 ? N3 CEF 1370 B 1 
HETATM 19 O O5 CEF . . . L 6 41.873 11.041 17.721 1 77.56 ? O5 CEF 1370 B 1 
HETATM 20 C C11 CEF . . . L 6 42.23 10.72 19.069 1 74.9 ? C11 CEF 1370 B 1 
HETATM 21 C C12 CEF . . . L 6 43.579 13.35 15.449 1 64.73 ? C12 CEF 1370 B 1 
HETATM 22 C C13 CEF . . . L 6 43.286 14.198 14.461 1 61.64 ? C13 CEF 1370 B 1 
HETATM 23 S S2 CEF . . . L 6 44.587 15.21 14.224 1 61.53 ? S2 CEF 1370 B 1 
HETATM 24 C C14 CEF . . . L 6 45.511 14.5 15.422 1 64.79 ? C14 CEF 1370 B 1 
HETATM 25 N N4 CEF . . . L 6 46.748 14.85 15.768 1 67.59 ? N4 CEF 1370 B 1 
HETATM 26 N N5 CEF . . . L 6 44.8 13.517 15.97 1 64.85 ? N5 CEF 1370 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#