data_2C6D # _model_server_result.job_id W5qO2s0EUKHz0phppzELTQ _model_server_result.datetime_utc '2024-10-10 01:15:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1391}' # _entry.id 2C6D # _exptl.entry_id 2C6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2C6D _cell.length_a 86.5 _cell.length_b 86.5 _cell.length_c 78.3 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2C6D _atom_sites.fract_transf_matrix[1][1] 0.011561 _atom_sites.fract_transf_matrix[1][2] 0.006675 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 1389 1389 GOL GOL . C 3 PO4 A 1 1390 1390 PO4 PO4 . D 4 ANP A 1 1391 1391 ANP ANP . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . E 5 HOH A 145 2145 2145 HOH HOH . E 5 HOH A 146 2146 2146 HOH HOH . E 5 HOH A 147 2147 2147 HOH HOH . E 5 HOH A 148 2148 2148 HOH HOH . E 5 HOH A 149 2149 2149 HOH HOH . E 5 HOH A 150 2150 2150 HOH HOH . E 5 HOH A 151 2151 2151 HOH HOH . E 5 HOH A 152 2152 2152 HOH HOH . E 5 HOH A 153 2153 2153 HOH HOH . E 5 HOH A 154 2154 2154 HOH HOH . E 5 HOH A 155 2155 2155 HOH HOH . E 5 HOH A 156 2156 2156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ANP . A . D 4 15.037 57.738 17.969 0.5 47.69 ? PB ANP 1391 A 1 HETATM 2 P PB ANP . B . D 4 17.785 58.35 20.389 0.5 50.58 ? PB ANP 1391 A 1 HETATM 3 O O1B ANP . A . D 4 15.506 57.453 19.308 0.5 49.57 ? O1B ANP 1391 A 1 HETATM 4 O O1B ANP . B . D 4 16.375 57.916 20.971 0.5 53.88 ? O1B ANP 1391 A 1 HETATM 5 O O2B ANP . A . D 4 14.617 59.16 17.829 0.5 48.87 ? O2B ANP 1391 A 1 HETATM 6 O O2B ANP . B . D 4 18.803 57.539 21.023 0.5 51.23 ? O2B ANP 1391 A 1 HETATM 7 N N3B ANP . A . D 4 13.854 56.738 17.611 0.5 47.44 ? N3B ANP 1391 A 1 HETATM 8 N N3B ANP . B . D 4 18.02 59.811 20.601 0.5 52.85 ? N3B ANP 1391 A 1 HETATM 9 P PA ANP . A . D 4 17.533 56.644 17.115 0.5 51.3 ? PA ANP 1391 A 1 HETATM 10 P PA ANP . B . D 4 18.302 56.815 17.978 0.5 49.99 ? PA ANP 1391 A 1 HETATM 11 O O1A ANP . A . D 4 18.137 56.443 15.785 0.5 52.19 ? O1A ANP 1391 A 1 HETATM 12 O O1A ANP . B . D 4 17.74 56.898 16.602 0.5 51.27 ? O1A ANP 1391 A 1 HETATM 13 O O2A ANP . A . D 4 18.354 57.484 18.041 0.5 51.52 ? O2A ANP 1391 A 1 HETATM 14 O O2A ANP . B . D 4 19.779 56.935 18.073 0.5 51.64 ? O2A ANP 1391 A 1 HETATM 15 O O3A ANP . A . D 4 16.105 57.302 16.924 0.5 51.44 ? O3A ANP 1391 A 1 HETATM 16 O O3A ANP . B . D 4 17.6 57.938 18.878 0.5 50.89 ? O3A ANP 1391 A 1 HETATM 17 O O5' ANP . A . D 4 17.177 55.295 17.877 0.5 50.92 ? O5' ANP 1391 A 1 HETATM 18 O O5' ANP . B . D 4 17.867 55.497 18.751 0.5 47.15 ? O5' ANP 1391 A 1 HETATM 19 C C5' ANP . A . D 4 17.877 54.09 17.49 0.5 47.94 ? C5' ANP 1391 A 1 HETATM 20 C C5' ANP . B . D 4 17.722 54.257 18.009 0.5 40.88 ? C5' ANP 1391 A 1 HETATM 21 C C4' ANP . A . D 4 17.46 52.862 18.318 0.5 47.92 ? C4' ANP 1391 A 1 HETATM 22 C C4' ANP . B . D 4 17.263 53.099 18.926 0.5 36.96 ? C4' ANP 1391 A 1 HETATM 23 O O4' ANP . A . D 4 18.576 52.4 19.179 0.5 47.21 ? O4' ANP 1391 A 1 HETATM 24 O O4' ANP . B . D 4 18.369 52.549 19.752 0.5 33.82 ? O4' ANP 1391 A 1 HETATM 25 C C3' ANP . A . D 4 16.328 53.019 19.359 0.5 47.98 ? C3' ANP 1391 A 1 HETATM 26 C C3' ANP . B . D 4 16.203 53.417 20.009 0.5 33.98 ? C3' ANP 1391 A 1 HETATM 27 O O3' ANP . A . D 4 15.56 51.846 19.588 0.5 48.47 ? O3' ANP 1391 A 1 HETATM 28 O O3' ANP . B . D 4 15.32 52.35 20.339 0.5 32.96 ? O3' ANP 1391 A 1 HETATM 29 C C2' ANP . A . D 4 17.076 53.566 20.584 0.5 47.21 ? C2' ANP 1391 A 1 HETATM 30 C C2' ANP . B . D 4 17.064 53.934 21.164 0.5 32.17 ? C2' ANP 1391 A 1 HETATM 31 O O2' ANP . A . D 4 16.398 53.519 21.825 0.5 48.99 ? O2' ANP 1391 A 1 HETATM 32 O O2' ANP . B . D 4 16.446 54.056 22.437 0.5 30.71 ? O2' ANP 1391 A 1 HETATM 33 C C1' ANP . A . D 4 18.369 52.807 20.558 0.5 46.2 ? C1' ANP 1391 A 1 HETATM 34 C C1' ANP . B . D 4 18.273 53.024 21.121 0.5 31 ? C1' ANP 1391 A 1 HETATM 35 N N9 ANP . A . D 4 19.533 53.632 21.081 0.5 44.22 ? N9 ANP 1391 A 1 HETATM 36 N N9 ANP . B . D 4 19.537 53.738 21.552 0.5 27.84 ? N9 ANP 1391 A 1 HETATM 37 C C8 ANP . A . D 4 20.137 54.688 20.41 0.5 43.51 ? C8 ANP 1391 A 1 HETATM 38 C C8 ANP . B . D 4 20.19 54.721 20.82 0.5 26.21 ? C8 ANP 1391 A 1 HETATM 39 N N7 ANP . A . D 4 21.138 55.258 21.064 0.5 43.16 ? N7 ANP 1391 A 1 HETATM 40 N N7 ANP . B . D 4 21.273 55.211 21.389 0.5 27.05 ? N7 ANP 1391 A 1 HETATM 41 C C5 ANP . A . D 4 21.222 54.563 22.228 0.5 43.37 ? C5 ANP 1391 A 1 HETATM 42 C C5 ANP . B . D 4 21.372 54.538 22.561 0.5 27.46 ? C5 ANP 1391 A 1 HETATM 43 C C6 ANP . A . D 4 22.077 54.63 23.408 0.5 41.8 ? C6 ANP 1391 A 1 HETATM 44 C C6 ANP . B . D 4 22.3 54.555 23.675 0.5 26.76 ? C6 ANP 1391 A 1 HETATM 45 N N6 ANP . A . D 4 23.058 55.506 23.571 0.5 41.7 ? N6 ANP 1391 A 1 HETATM 46 N N6 ANP . B . D 4 23.356 55.348 23.75 0.5 26.2 ? N6 ANP 1391 A 1 HETATM 47 N N1 ANP . A . D 4 21.858 53.706 24.46 0.5 43.3 ? N1 ANP 1391 A 1 HETATM 48 N N1 ANP . B . D 4 22.075 53.675 24.765 0.5 29.25 ? N1 ANP 1391 A 1 HETATM 49 C C2 ANP . A . D 4 20.844 52.746 24.372 0.5 42.75 ? C2 ANP 1391 A 1 HETATM 50 C C2 ANP . B . D 4 20.979 52.806 24.765 0.5 27.75 ? C2 ANP 1391 A 1 HETATM 51 N N3 ANP . A . D 4 19.992 52.607 23.302 0.5 43.98 ? N3 ANP 1391 A 1 HETATM 52 N N3 ANP . B . D 4 20.052 52.72 23.761 0.5 28.35 ? N3 ANP 1391 A 1 HETATM 53 C C4 ANP . A . D 4 20.223 53.538 22.258 0.5 43.59 ? C4 ANP 1391 A 1 HETATM 54 C C4 ANP . B . D 4 20.292 53.604 22.682 0.5 27.97 ? C4 ANP 1391 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #