data_2C6F # _model_server_result.job_id cqn3p4J09MTfQq0R8NfBig _model_server_result.datetime_utc '2024-11-15 08:19:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":695}' # _entry.id 2C6F # _exptl.entry_id 2C6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C6F _cell.length_a 101.12 _cell.length_b 211.32 _cell.length_c 171.27 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,M,N,U 1 1 B,E,F,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N ? 3 O N N ? 3 P N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 691 NAG 2 n C NAG 2 C 2 NAG A 696 NAG 2 n D NAG 1 D 1 NAG A 693 NAG 2 n D NAG 2 D 2 NAG A 694 NAG 2 n E NAG 1 E 1 NAG B 691 NAG 2 n E NAG 2 E 2 NAG B 696 NAG 2 n F NAG 1 F 1 NAG B 693 NAG 2 n F NAG 2 F 2 NAG B 694 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 136 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.559 ? disulf ? disulf2 A SG CYS 330 A CYS 330 1_555 A SG CYS 348 A CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 A SG CYS 516 A CYS 516 1_555 A SG CYS 528 A CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf4 B SG CYS 128 B CYS 128 1_555 B SG CYS 136 B CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf5 B SG CYS 330 B CYS 330 1_555 B SG CYS 348 B CYS 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf6 B SG CYS 516 B CYS 516 1_555 B SG CYS 528 B CYS 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 25 A ASN 25 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.478 ? covale ? covale2 A ND2 ASN 45 A ASN 45 1_555 G C1 NAG . A NAG 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale3 A ND2 ASN 45 A ASN 45 1_555 G O5 NAG . A NAG 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale4 A ND2 ASN 117 A ASN 117 1_555 H C1 NAG . A NAG 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.484 ? covale ? covale5 A ND2 ASN 289 A ASN 289 1_555 I C1 NAG . A NAG 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale6 A ND2 ASN 289 A ASN 289 1_555 I O5 NAG . A NAG 697 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? covale ? covale7 A ND2 ASN 480 A ASN 480 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale8 A OE2 GLU 596 A GLU 596 3_554 C O7 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? covale ? covale9 B ND2 ASN 25 B ASN 25 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.476 ? covale ? covale10 B ND2 ASN 25 B ASN 25 1_555 F O5 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale11 B ND2 ASN 45 B ASN 45 1_555 O C1 NAG . B NAG 692 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale12 B ND2 ASN 117 B ASN 117 1_555 P C1 NAG . B NAG 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale13 B ND2 ASN 480 B ASN 480 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale14 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? covale ? covale15 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale16 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale17 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.482 ? metalc ? metalc1 A NE2 HIS 361 A HIS 361 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc2 A NE2 HIS 365 A HIS 365 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A OE1 GLU 389 A GLU 389 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 J ZN ZN . A ZN 701 1_555 U O HOH . A HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc5 B NE2 HIS 361 B HIS 361 1_555 Q ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc6 B NE2 HIS 365 B HIS 365 1_555 Q ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc7 B OE1 GLU 389 B GLU 389 1_555 Q ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 256 n n C1 O1 NAG sing 257 n n C1 O5 NAG sing 258 n n C1 H1 NAG sing 259 n n C2 C3 NAG sing 260 n n C2 N2 NAG sing 261 n n C2 H2 NAG sing 262 n n C3 C4 NAG sing 263 n n C3 O3 NAG sing 264 n n C3 H3 NAG sing 265 n n C4 C5 NAG sing 266 n n C4 O4 NAG sing 267 n n C4 H4 NAG sing 268 n n C5 C6 NAG sing 269 n n C5 O5 NAG sing 270 n n C5 H5 NAG sing 271 n n C6 O6 NAG sing 272 n n C6 H61 NAG sing 273 n n C6 H62 NAG sing 274 n n C7 C8 NAG sing 275 n n C7 N2 NAG sing 276 n n C7 O7 NAG doub 277 n n C8 H81 NAG sing 278 n n C8 H82 NAG sing 279 n n C8 H83 NAG sing 280 n n N2 HN2 NAG sing 281 n n O1 HO1 NAG sing 282 n n O3 HO3 NAG sing 283 n n O4 HO4 NAG sing 284 n n O6 HO6 NAG sing 285 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2C6F _atom_sites.fract_transf_matrix[1][1] 0.009889 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005839 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 NAG A 1 692 692 NAG NAG . H 3 NAG A 1 695 695 NAG NAG . I 3 NAG A 1 697 697 NAG NAG . J 4 ZN A 1 701 701 ZN ZN . K 5 CL A 1 702 702 CL CL . L 6 ACT A 1 800 800 ACT ACT . M 6 ACT A 1 801 801 ACT ACT . N 7 GOL A 1 2434 2434 GOL GOL . O 3 NAG B 1 692 692 NAG NAG . P 3 NAG B 1 695 695 NAG NAG . Q 4 ZN B 1 701 701 ZN ZN . R 5 CL B 1 703 703 CL CL . S 6 ACT B 1 801 801 ACT ACT . T 7 GOL B 1 2433 2433 GOL GOL . U 8 HOH A 1 2001 2001 HOH HOH . U 8 HOH A 2 2002 2002 HOH HOH . U 8 HOH A 3 2003 2003 HOH HOH . U 8 HOH A 4 2004 2004 HOH HOH . U 8 HOH A 5 2005 2005 HOH HOH . U 8 HOH A 6 2006 2006 HOH HOH . U 8 HOH A 7 2007 2007 HOH HOH . U 8 HOH A 8 2008 2008 HOH HOH . U 8 HOH A 9 2009 2009 HOH HOH . U 8 HOH A 10 2010 2010 HOH HOH . U 8 HOH A 11 2011 2011 HOH HOH . V 8 HOH B 1 2001 2001 HOH HOH . V 8 HOH B 2 2002 2002 HOH HOH . V 8 HOH B 3 2003 2003 HOH HOH . V 8 HOH B 4 2004 2004 HOH HOH . V 8 HOH B 5 2005 2005 HOH HOH . V 8 HOH B 6 2006 2006 HOH HOH . V 8 HOH B 7 2007 2007 HOH HOH . V 8 HOH B 8 2008 2008 HOH HOH . V 8 HOH B 9 2009 2009 HOH HOH . V 8 HOH B 10 2010 2010 HOH HOH . V 8 HOH B 11 2011 2011 HOH HOH . V 8 HOH B 12 2012 2012 HOH HOH . V 8 HOH B 13 2013 2013 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 3 -15.577 -14.711 -14.119 1 77.12 ? C1 NAG 695 A 1 HETATM 2 C C2 NAG . . . H 3 -14.161 -14.733 -13.554 1 76.92 ? C2 NAG 695 A 1 HETATM 3 C C3 NAG . . . H 3 -14.223 -14.896 -12.033 1 76.76 ? C3 NAG 695 A 1 HETATM 4 C C4 NAG . . . H 3 -15.107 -13.798 -11.416 1 76.41 ? C4 NAG 695 A 1 HETATM 5 C C5 NAG . . . H 3 -16.469 -13.712 -12.133 1 76.48 ? C5 NAG 695 A 1 HETATM 6 C C6 NAG . . . H 3 -17.263 -12.498 -11.688 1 76.35 ? C6 NAG 695 A 1 HETATM 7 C C7 NAG . . . H 3 -12.404 -15.559 -14.981 1 77.99 ? C7 NAG 695 A 1 HETATM 8 C C8 NAG . . . H 3 -11.395 -16.669 -15.221 1 77.78 ? C8 NAG 695 A 1 HETATM 9 N N2 NAG . . . H 3 -13.411 -15.821 -14.153 1 77.63 ? N2 NAG 695 A 1 HETATM 10 O O3 NAG . . . H 3 -12.888 -14.818 -11.492 1 76.55 ? O3 NAG 695 A 1 HETATM 11 O O4 NAG . . . H 3 -15.325 -14.081 -10.018 1 76.72 ? O4 NAG 695 A 1 HETATM 12 O O5 NAG . . . H 3 -16.292 -13.599 -13.567 1 75.79 ? O5 NAG 695 A 1 HETATM 13 O O6 NAG . . . H 3 -16.446 -11.336 -11.661 1 79.16 ? O6 NAG 695 A 1 HETATM 14 O O7 NAG . . . H 3 -12.266 -14.47 -15.543 1 79.35 ? O7 NAG 695 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #