data_2C6G # _model_server_result.job_id JiD0z0wpVSKAL-5JhiZvQA _model_server_result.datetime_utc '2024-11-15 02:04:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c6g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1753}' # _entry.id 2C6G # _exptl.entry_id 2C6G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C6G _cell.length_a 102.435 _cell.length_b 130.428 _cell.length_c 159.775 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C6G _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 130.428 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1755 NAG 2 n B NAG 2 B 2 NAG A 1756 NAG 2 n C NAG 1 C 1 NAG A 1760 NAG 2 n C NAG 2 C 2 NAG A 1761 NAG 3 n D NAG 1 D 1 NAG A 1762 NAG 3 n D NAG 2 D 2 NAG A 1763 NAG 3 n D BMA 3 D 3 BMA A 1764 BMA 3 n D MAN 4 D 4 MAN A 1765 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 33 A ASN 76 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale2 A ND2 ASN 78 A ASN 121 1_555 J C1 NAG . A NAG 1757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.469 ? covale ? covale3 A ND2 ASN 97 A ASN 140 1_555 K C1 NAG . A NAG 1758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale4 A ND2 ASN 416 A ASN 459 1_555 L C1 NAG . A NAG 1759 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale5 A ND2 ASN 433 A ASN 476 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale6 A ND2 ASN 595 A ASN 638 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale9 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale10 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale11 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? metalc ? metalc1 A OG1 THR 226 A THR 269 1_555 H CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc2 A O THR 226 A THR 269 1_555 H CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 A O TYR 229 A TYR 272 1_555 H CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc4 A NE2 HIS 334 A HIS 377 1_555 G ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc5 A OD2 ASP 344 A ASP 387 1_555 F ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc6 A OD1 ASP 344 A ASP 387 1_555 G ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc7 A OE1 GLU 382 A GLU 425 1_555 F ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc8 A OE2 GLU 382 A GLU 425 1_555 F ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc9 A OE2 GLU 390 A GLU 433 1_555 H CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc10 A OE1 GLU 390 A GLU 433 1_555 H CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 A OE2 GLU 393 A GLU 436 1_555 H CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc12 A OD1 ASP 410 A ASP 453 1_555 G ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc13 A OD2 ASP 410 A ASP 453 1_555 G ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc14 A NE2 HIS 510 A HIS 553 1_555 F ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc15 F ZN ZN . A ZN 1751 1_555 M O HOH . A HOH 2139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc16 G ZN ZN . A ZN 1752 1_555 M O HOH . A HOH 2139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc17 H CA CA . A CA 1753 1_555 M O HOH . A HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2C6G _atom_sites.fract_transf_matrix[1][1] 0.009762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007667 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 GLU A 1 1766 1766 GLU GLU . F 5 ZN A 1 1751 1751 ZN ZN . G 5 ZN A 1 1752 1752 ZN ZN . H 6 CA A 1 1753 1753 CA CA . I 7 CL A 1 1754 1754 CL CL . J 8 NAG A 1 1757 1757 NAG NAG . K 8 NAG A 1 1758 1758 NAG NAG . L 8 NAG A 1 1759 1759 NAG NAG . M 9 HOH A 1 2001 2001 HOH HOH . M 9 HOH A 2 2002 2002 HOH HOH . M 9 HOH A 3 2003 2003 HOH HOH . M 9 HOH A 4 2004 2004 HOH HOH . M 9 HOH A 5 2005 2005 HOH HOH . M 9 HOH A 6 2006 2006 HOH HOH . M 9 HOH A 7 2007 2007 HOH HOH . M 9 HOH A 8 2008 2008 HOH HOH . M 9 HOH A 9 2009 2009 HOH HOH . M 9 HOH A 10 2010 2010 HOH HOH . M 9 HOH A 11 2011 2011 HOH HOH . M 9 HOH A 12 2012 2012 HOH HOH . M 9 HOH A 13 2013 2013 HOH HOH . M 9 HOH A 14 2014 2014 HOH HOH . M 9 HOH A 15 2015 2015 HOH HOH . M 9 HOH A 16 2016 2016 HOH HOH . M 9 HOH A 17 2017 2017 HOH HOH . M 9 HOH A 18 2018 2018 HOH HOH . M 9 HOH A 19 2019 2019 HOH HOH . M 9 HOH A 20 2020 2020 HOH HOH . M 9 HOH A 21 2021 2021 HOH HOH . M 9 HOH A 22 2022 2022 HOH HOH . M 9 HOH A 23 2023 2023 HOH HOH . M 9 HOH A 24 2024 2024 HOH HOH . M 9 HOH A 25 2025 2025 HOH HOH . M 9 HOH A 26 2026 2026 HOH HOH . M 9 HOH A 27 2027 2027 HOH HOH . M 9 HOH A 28 2028 2028 HOH HOH . M 9 HOH A 29 2029 2029 HOH HOH . M 9 HOH A 30 2030 2030 HOH HOH . M 9 HOH A 31 2031 2031 HOH HOH . M 9 HOH A 32 2032 2032 HOH HOH . M 9 HOH A 33 2033 2033 HOH HOH . M 9 HOH A 34 2034 2034 HOH HOH . M 9 HOH A 35 2035 2035 HOH HOH . M 9 HOH A 36 2036 2036 HOH HOH . M 9 HOH A 37 2037 2037 HOH HOH . M 9 HOH A 38 2038 2038 HOH HOH . M 9 HOH A 39 2039 2039 HOH HOH . M 9 HOH A 40 2040 2040 HOH HOH . M 9 HOH A 41 2041 2041 HOH HOH . M 9 HOH A 42 2042 2042 HOH HOH . M 9 HOH A 43 2043 2043 HOH HOH . M 9 HOH A 44 2044 2044 HOH HOH . M 9 HOH A 45 2045 2045 HOH HOH . M 9 HOH A 46 2046 2046 HOH HOH . M 9 HOH A 47 2047 2047 HOH HOH . M 9 HOH A 48 2048 2048 HOH HOH . M 9 HOH A 49 2049 2049 HOH HOH . M 9 HOH A 50 2050 2050 HOH HOH . M 9 HOH A 51 2051 2051 HOH HOH . M 9 HOH A 52 2052 2052 HOH HOH . M 9 HOH A 53 2053 2053 HOH HOH . M 9 HOH A 54 2054 2054 HOH HOH . M 9 HOH A 55 2055 2055 HOH HOH . M 9 HOH A 56 2056 2056 HOH HOH . M 9 HOH A 57 2057 2057 HOH HOH . M 9 HOH A 58 2058 2058 HOH HOH . M 9 HOH A 59 2059 2059 HOH HOH . M 9 HOH A 60 2060 2060 HOH HOH . M 9 HOH A 61 2061 2061 HOH HOH . M 9 HOH A 62 2062 2062 HOH HOH . M 9 HOH A 63 2063 2063 HOH HOH . M 9 HOH A 64 2064 2064 HOH HOH . M 9 HOH A 65 2065 2065 HOH HOH . M 9 HOH A 66 2066 2066 HOH HOH . M 9 HOH A 67 2067 2067 HOH HOH . M 9 HOH A 68 2068 2068 HOH HOH . M 9 HOH A 69 2069 2069 HOH HOH . M 9 HOH A 70 2070 2070 HOH HOH . M 9 HOH A 71 2071 2071 HOH HOH . M 9 HOH A 72 2072 2072 HOH HOH . M 9 HOH A 73 2073 2073 HOH HOH . M 9 HOH A 74 2074 2074 HOH HOH . M 9 HOH A 75 2075 2075 HOH HOH . M 9 HOH A 76 2076 2076 HOH HOH . M 9 HOH A 77 2077 2077 HOH HOH . M 9 HOH A 78 2078 2078 HOH HOH . M 9 HOH A 79 2079 2079 HOH HOH . M 9 HOH A 80 2080 2080 HOH HOH . M 9 HOH A 81 2081 2081 HOH HOH . M 9 HOH A 82 2082 2082 HOH HOH . M 9 HOH A 83 2083 2083 HOH HOH . M 9 HOH A 84 2084 2084 HOH HOH . M 9 HOH A 85 2085 2085 HOH HOH . M 9 HOH A 86 2086 2086 HOH HOH . M 9 HOH A 87 2087 2087 HOH HOH . M 9 HOH A 88 2088 2088 HOH HOH . M 9 HOH A 89 2089 2089 HOH HOH . M 9 HOH A 90 2090 2090 HOH HOH . M 9 HOH A 91 2091 2091 HOH HOH . M 9 HOH A 92 2092 2092 HOH HOH . M 9 HOH A 93 2093 2093 HOH HOH . M 9 HOH A 94 2094 2094 HOH HOH . M 9 HOH A 95 2095 2095 HOH HOH . M 9 HOH A 96 2096 2096 HOH HOH . M 9 HOH A 97 2097 2097 HOH HOH . M 9 HOH A 98 2098 2098 HOH HOH . M 9 HOH A 99 2099 2099 HOH HOH . M 9 HOH A 100 2100 2100 HOH HOH . M 9 HOH A 101 2101 2101 HOH HOH . M 9 HOH A 102 2102 2102 HOH HOH . M 9 HOH A 103 2103 2103 HOH HOH . M 9 HOH A 104 2104 2104 HOH HOH . M 9 HOH A 105 2105 2105 HOH HOH . M 9 HOH A 106 2106 2106 HOH HOH . M 9 HOH A 107 2107 2107 HOH HOH . M 9 HOH A 108 2108 2108 HOH HOH . M 9 HOH A 109 2109 2109 HOH HOH . M 9 HOH A 110 2110 2110 HOH HOH . M 9 HOH A 111 2111 2111 HOH HOH . M 9 HOH A 112 2112 2112 HOH HOH . M 9 HOH A 113 2113 2113 HOH HOH . M 9 HOH A 114 2114 2114 HOH HOH . M 9 HOH A 115 2115 2115 HOH HOH . M 9 HOH A 116 2116 2116 HOH HOH . M 9 HOH A 117 2117 2117 HOH HOH . M 9 HOH A 118 2118 2118 HOH HOH . M 9 HOH A 119 2119 2119 HOH HOH . M 9 HOH A 120 2120 2120 HOH HOH . M 9 HOH A 121 2121 2121 HOH HOH . M 9 HOH A 122 2122 2122 HOH HOH . M 9 HOH A 123 2123 2123 HOH HOH . M 9 HOH A 124 2124 2124 HOH HOH . M 9 HOH A 125 2125 2125 HOH HOH . M 9 HOH A 126 2126 2126 HOH HOH . M 9 HOH A 127 2127 2127 HOH HOH . M 9 HOH A 128 2128 2128 HOH HOH . M 9 HOH A 129 2129 2129 HOH HOH . M 9 HOH A 130 2130 2130 HOH HOH . M 9 HOH A 131 2131 2131 HOH HOH . M 9 HOH A 132 2132 2132 HOH HOH . M 9 HOH A 133 2133 2133 HOH HOH . M 9 HOH A 134 2134 2134 HOH HOH . M 9 HOH A 135 2135 2135 HOH HOH . M 9 HOH A 136 2136 2136 HOH HOH . M 9 HOH A 137 2137 2137 HOH HOH . M 9 HOH A 138 2138 2138 HOH HOH . M 9 HOH A 139 2139 2139 HOH HOH . M 9 HOH A 140 2140 2140 HOH HOH . M 9 HOH A 141 2141 2141 HOH HOH . M 9 HOH A 142 2142 2142 HOH HOH . M 9 HOH A 143 2143 2143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x -0.731 _atom_site.Cartn_y 50.076 _atom_site.Cartn_z 41.745 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 21.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1753 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 492 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #