data_2C6P # _model_server_result.job_id PP1crmzZG0XLCCTSLapcbQ _model_server_result.datetime_utc '2024-11-15 03:31:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c6p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1758}' # _entry.id 2C6P # _exptl.entry_id 2C6P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 7 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C6P _cell.length_a 102.573 _cell.length_b 130.365 _cell.length_c 159.414 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C6P _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 130.365 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 J N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1755 NAG 2 n B NAG 2 B 2 NAG A 1756 NAG 2 n C NAG 1 C 1 NAG A 1759 NAG 2 n C NAG 2 C 2 NAG A 1760 NAG 3 n D NAG 1 D 1 NAG A 1761 NAG 3 n D NAG 2 D 2 NAG A 1762 NAG 3 n D BMA 3 D 3 BMA A 1763 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 33 A ASN 76 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale2 A ND2 ASN 97 A ASN 140 1_555 I C1 NAG . A NAG 1757 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 A ND2 ASN 416 A ASN 459 1_555 J C1 NAG . A NAG 1758 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale4 A ND2 ASN 433 A ASN 476 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 A ND2 ASN 595 A ASN 638 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale6 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 A OG1 THR 226 A THR 269 1_555 G CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A O THR 226 A THR 269 1_555 G CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 A O TYR 229 A TYR 272 1_555 G CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A NE2 HIS 334 A HIS 377 1_555 F ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc5 A OD2 ASP 344 A ASP 387 1_555 E ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc6 A OD1 ASP 344 A ASP 387 1_555 F ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc7 A OE1 GLU 382 A GLU 425 1_555 E ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 A OE2 GLU 382 A GLU 425 1_555 E ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc9 A OE2 GLU 390 A GLU 433 1_555 G CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc10 A OE1 GLU 390 A GLU 433 1_555 G CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc11 A OE2 GLU 393 A GLU 436 1_555 G CA CA . A CA 1753 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 A OD1 ASP 410 A ASP 453 1_555 F ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc13 A OD2 ASP 410 A ASP 453 1_555 F ZN ZN . A ZN 1752 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc14 A NE2 HIS 510 A HIS 553 1_555 E ZN ZN . A ZN 1751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc15 E ZN ZN . A ZN 1751 1_555 K O3 PO4 . A PO4 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc16 F ZN ZN . A ZN 1752 1_555 K O1 PO4 . A PO4 1764 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? metalc ? metalc17 G CA CA . A CA 1753 1_555 L O HOH . A HOH 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 261 n n C1 O1 NAG sing 262 n n C1 O5 NAG sing 263 n n C1 H1 NAG sing 264 n n C2 C3 NAG sing 265 n n C2 N2 NAG sing 266 n n C2 H2 NAG sing 267 n n C3 C4 NAG sing 268 n n C3 O3 NAG sing 269 n n C3 H3 NAG sing 270 n n C4 C5 NAG sing 271 n n C4 O4 NAG sing 272 n n C4 H4 NAG sing 273 n n C5 C6 NAG sing 274 n n C5 O5 NAG sing 275 n n C5 H5 NAG sing 276 n n C6 O6 NAG sing 277 n n C6 H61 NAG sing 278 n n C6 H62 NAG sing 279 n n C7 C8 NAG sing 280 n n C7 N2 NAG sing 281 n n C7 O7 NAG doub 282 n n C8 H81 NAG sing 283 n n C8 H82 NAG sing 284 n n C8 H83 NAG sing 285 n n N2 HN2 NAG sing 286 n n O1 HO1 NAG sing 287 n n O3 HO3 NAG sing 288 n n O4 HO4 NAG sing 289 n n O6 HO6 NAG sing 290 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2C6P _atom_sites.fract_transf_matrix[1][1] 0.009749 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ZN A 1 1751 1751 ZN ZN . F 4 ZN A 1 1752 1752 ZN ZN . G 5 CA A 1 1753 1753 CA CA . H 6 CL A 1 1754 1754 CL CL . I 7 NAG A 1 1757 1757 NAG NAG . J 7 NAG A 1 1758 1758 NAG NAG . K 8 PO4 A 1 1764 1764 PO4 PO4 . L 9 HOH A 1 2001 2001 HOH HOH . L 9 HOH A 2 2002 2002 HOH HOH . L 9 HOH A 3 2003 2003 HOH HOH . L 9 HOH A 4 2004 2004 HOH HOH . L 9 HOH A 5 2005 2005 HOH HOH . L 9 HOH A 6 2006 2006 HOH HOH . L 9 HOH A 7 2007 2007 HOH HOH . L 9 HOH A 8 2008 2008 HOH HOH . L 9 HOH A 9 2009 2009 HOH HOH . L 9 HOH A 10 2010 2010 HOH HOH . L 9 HOH A 11 2011 2011 HOH HOH . L 9 HOH A 12 2012 2012 HOH HOH . L 9 HOH A 13 2013 2013 HOH HOH . L 9 HOH A 14 2014 2014 HOH HOH . L 9 HOH A 15 2015 2015 HOH HOH . L 9 HOH A 16 2016 2016 HOH HOH . L 9 HOH A 17 2017 2017 HOH HOH . L 9 HOH A 18 2018 2018 HOH HOH . L 9 HOH A 19 2019 2019 HOH HOH . L 9 HOH A 20 2020 2020 HOH HOH . L 9 HOH A 21 2021 2021 HOH HOH . L 9 HOH A 22 2022 2022 HOH HOH . L 9 HOH A 23 2023 2023 HOH HOH . L 9 HOH A 24 2024 2024 HOH HOH . L 9 HOH A 25 2025 2025 HOH HOH . L 9 HOH A 26 2026 2026 HOH HOH . L 9 HOH A 27 2027 2027 HOH HOH . L 9 HOH A 28 2028 2028 HOH HOH . L 9 HOH A 29 2029 2029 HOH HOH . L 9 HOH A 30 2030 2030 HOH HOH . L 9 HOH A 31 2031 2031 HOH HOH . L 9 HOH A 32 2032 2032 HOH HOH . L 9 HOH A 33 2033 2033 HOH HOH . L 9 HOH A 34 2034 2034 HOH HOH . L 9 HOH A 35 2035 2035 HOH HOH . L 9 HOH A 36 2036 2036 HOH HOH . L 9 HOH A 37 2037 2037 HOH HOH . L 9 HOH A 38 2038 2038 HOH HOH . L 9 HOH A 39 2039 2039 HOH HOH . L 9 HOH A 40 2040 2040 HOH HOH . L 9 HOH A 41 2041 2041 HOH HOH . L 9 HOH A 42 2042 2042 HOH HOH . L 9 HOH A 43 2043 2043 HOH HOH . L 9 HOH A 44 2044 2044 HOH HOH . L 9 HOH A 45 2045 2045 HOH HOH . L 9 HOH A 46 2046 2046 HOH HOH . L 9 HOH A 47 2047 2047 HOH HOH . L 9 HOH A 48 2048 2048 HOH HOH . L 9 HOH A 49 2049 2049 HOH HOH . L 9 HOH A 50 2050 2050 HOH HOH . L 9 HOH A 51 2051 2051 HOH HOH . L 9 HOH A 52 2052 2052 HOH HOH . L 9 HOH A 53 2053 2053 HOH HOH . L 9 HOH A 54 2054 2054 HOH HOH . L 9 HOH A 55 2055 2055 HOH HOH . L 9 HOH A 56 2056 2056 HOH HOH . L 9 HOH A 57 2057 2057 HOH HOH . L 9 HOH A 58 2058 2058 HOH HOH . L 9 HOH A 59 2059 2059 HOH HOH . L 9 HOH A 60 2060 2060 HOH HOH . L 9 HOH A 61 2061 2061 HOH HOH . L 9 HOH A 62 2062 2062 HOH HOH . L 9 HOH A 63 2063 2063 HOH HOH . L 9 HOH A 64 2064 2064 HOH HOH . L 9 HOH A 65 2065 2065 HOH HOH . L 9 HOH A 66 2066 2066 HOH HOH . L 9 HOH A 67 2067 2067 HOH HOH . L 9 HOH A 68 2068 2068 HOH HOH . L 9 HOH A 69 2069 2069 HOH HOH . L 9 HOH A 70 2070 2070 HOH HOH . L 9 HOH A 71 2071 2071 HOH HOH . L 9 HOH A 72 2072 2072 HOH HOH . L 9 HOH A 73 2073 2073 HOH HOH . L 9 HOH A 74 2074 2074 HOH HOH . L 9 HOH A 75 2075 2075 HOH HOH . L 9 HOH A 76 2076 2076 HOH HOH . L 9 HOH A 77 2077 2077 HOH HOH . L 9 HOH A 78 2078 2078 HOH HOH . L 9 HOH A 79 2079 2079 HOH HOH . L 9 HOH A 80 2080 2080 HOH HOH . L 9 HOH A 81 2081 2081 HOH HOH . L 9 HOH A 82 2082 2082 HOH HOH . L 9 HOH A 83 2083 2083 HOH HOH . L 9 HOH A 84 2084 2084 HOH HOH . L 9 HOH A 85 2085 2085 HOH HOH . L 9 HOH A 86 2086 2086 HOH HOH . L 9 HOH A 87 2087 2087 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . J 7 36.159 37.725 53.105 1 66.21 ? C1 NAG 1758 A 1 HETATM 2 C C2 NAG . . . J 7 36.303 37.961 51.587 1 67.4 ? C2 NAG 1758 A 1 HETATM 3 C C3 NAG . . . J 7 37.69 37.679 50.986 1 71.12 ? C3 NAG 1758 A 1 HETATM 4 C C4 NAG . . . J 7 38.767 38.348 51.847 1 73.7 ? C4 NAG 1758 A 1 HETATM 5 C C5 NAG . . . J 7 38.622 38.031 53.346 1 73.14 ? C5 NAG 1758 A 1 HETATM 6 C C6 NAG . . . J 7 39.533 38.974 54.152 1 73.57 ? C6 NAG 1758 A 1 HETATM 7 C C7 NAG . . . J 7 34.485 37.965 49.971 1 56.32 ? C7 NAG 1758 A 1 HETATM 8 C C8 NAG . . . J 7 33.39 37.216 49.312 1 54.97 ? C8 NAG 1758 A 1 HETATM 9 N N2 NAG . . . J 7 35.207 37.304 50.875 1 62.32 ? N2 NAG 1758 A 1 HETATM 10 O O3 NAG . . . J 7 37.772 38.285 49.705 1 71.22 ? O3 NAG 1758 A 1 HETATM 11 O O4 NAG . . . J 7 40.089 38.036 51.403 1 73.83 ? O4 NAG 1758 A 1 HETATM 12 O O5 NAG . . . J 7 37.295 38.136 53.866 1 69.88 ? O5 NAG 1758 A 1 HETATM 13 O O6 NAG . . . J 7 40.234 39.891 53.328 1 71.88 ? O6 NAG 1758 A 1 HETATM 14 O O7 NAG . . . J 7 34.67 39.128 49.654 1 53.05 ? O7 NAG 1758 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #