data_2C7F # _model_server_result.job_id bLP82R4NkZYOb44l1MaONg _model_server_result.datetime_utc '2024-10-19 19:32:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":606}' # _entry.id 2C7F # _exptl.entry_id 2C7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C7F _cell.length_a 173.341 _cell.length_b 173.341 _cell.length_c 272.68 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PQS monomeric 1 author_and_software_defined_assembly 3 PQS monomeric 1 author_and_software_defined_assembly 4 PQS monomeric 1 author_and_software_defined_assembly 5 PQS monomeric 1 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,M,N,O,V 1 1 B,H,P,W 2 1 C,I,Q,X 3 1 D,J,R,Y 4 1 E,K,S,T,Z 5 1 F,L,U,AA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 AHR AHR C1 O1 . O5 HO5 . sing 2 ? 2 3 2 AHR AHR C1 O1 . O5 HO5 . sing 3 ? 3 2 1 AHR AHR C1 O1 . O5 HO5 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n G AHR 1 G 1 AHR A 1503 AHR 2 n G AHR 2 G 2 AHR A 1505 AHR 2 n G AHR 3 G 3 AHR A 1505 AHR 3 n H AHR 1 H 1 AHR B 1504 AHR 3 n H AHR 2 H 2 AHR B 1503 AHR 2 n I AHR 1 I 1 AHR C 1505 AHR 2 n I AHR 2 I 2 AHR C 1504 AHR 2 n I AHR 3 I 3 AHR C 1503 AHR 2 n J AHR 1 J 1 AHR D 1505 AHR 2 n J AHR 2 J 2 AHR D 1504 AHR 2 n J AHR 3 J 3 AHR D 1503 AHR 2 n K AHR 1 K 1 AHR E 1505 AHR 2 n K AHR 2 K 2 AHR E 1504 AHR 2 n K AHR 3 K 3 AHR E 1503 AHR 3 n L AHR 1 L 1 AHR F 1504 AHR 3 n L AHR 2 L 2 AHR F 1503 AHR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G O5 AHR . G AHR 1 1_555 G C1 AHR . G AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale2 G O5 AHR . G AHR 2 1_555 G C1 AHR . G AHR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 H O5 AHR . H AHR 1 1_555 H C1 AHR . H AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 I O5 AHR . I AHR 1 1_555 I C1 AHR . I AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale5 I O5 AHR . I AHR 2 1_555 I C1 AHR . I AHR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale6 J O5 AHR . J AHR 1 1_555 J C1 AHR . J AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale7 J O5 AHR . J AHR 2 1_555 J C1 AHR . J AHR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 K O5 AHR . K AHR 1 1_555 K C1 AHR . K AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 K O5 AHR . K AHR 2 1_555 K C1 AHR . K AHR 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale10 L O5 AHR . L AHR 1 1_555 L C1 AHR . L AHR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 103 n n C1 C2 EDO sing 104 n n C1 H11 EDO sing 105 n n C1 H12 EDO sing 106 n n O1 HO1 EDO sing 107 n n C2 O2 EDO sing 108 n n C2 H21 EDO sing 109 n n C2 H22 EDO sing 110 n n O2 HO2 EDO sing 111 n n # _atom_sites.entry_id 2C7F _atom_sites.fract_transf_matrix[1][1] 0.005769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 EDO A 1 604 1506 EDO EDO . N 4 EDO A 1 605 1506 EDO EDO . O 4 EDO A 1 606 1506 EDO EDO . P 4 EDO B 1 603 1505 EDO EDO . Q 4 EDO C 1 604 1506 EDO EDO . R 4 EDO D 1 604 1507 EDO EDO . S 4 EDO E 1 604 1506 EDO EDO . T 4 EDO E 1 605 1507 EDO EDO . U 4 EDO F 1 603 1505 EDO EDO . V 5 HOH A 1 701 2018 HOH HOH . V 5 HOH A 2 702 2002 HOH HOH . V 5 HOH A 3 703 2019 HOH HOH . V 5 HOH A 4 704 2014 HOH HOH . V 5 HOH A 5 705 2022 HOH HOH . V 5 HOH A 6 706 2006 HOH HOH . V 5 HOH A 7 707 2007 HOH HOH . V 5 HOH A 8 708 2005 HOH HOH . V 5 HOH A 9 709 2001 HOH HOH . V 5 HOH A 10 710 2012 HOH HOH . V 5 HOH A 11 711 2026 HOH HOH . V 5 HOH A 12 712 2009 HOH HOH . V 5 HOH A 13 713 2004 HOH HOH . V 5 HOH A 14 714 2023 HOH HOH . V 5 HOH A 15 715 2003 HOH HOH . V 5 HOH A 16 716 2020 HOH HOH . V 5 HOH A 17 717 2011 HOH HOH . V 5 HOH A 18 718 2013 HOH HOH . V 5 HOH A 19 719 2008 HOH HOH . V 5 HOH A 20 720 2017 HOH HOH . V 5 HOH A 21 721 2021 HOH HOH . V 5 HOH A 22 722 2025 HOH HOH . V 5 HOH A 23 723 2010 HOH HOH . V 5 HOH A 24 724 2015 HOH HOH . V 5 HOH A 25 725 2024 HOH HOH . V 5 HOH A 26 726 2016 HOH HOH . W 5 HOH B 1 701 2012 HOH HOH . W 5 HOH B 2 702 2015 HOH HOH . W 5 HOH B 3 703 2009 HOH HOH . W 5 HOH B 4 704 2002 HOH HOH . W 5 HOH B 5 705 2003 HOH HOH . W 5 HOH B 6 706 2014 HOH HOH . W 5 HOH B 7 707 2006 HOH HOH . W 5 HOH B 8 708 2004 HOH HOH . W 5 HOH B 9 709 2011 HOH HOH . W 5 HOH B 10 710 2005 HOH HOH . W 5 HOH B 11 711 2010 HOH HOH . W 5 HOH B 12 712 2008 HOH HOH . W 5 HOH B 13 713 2001 HOH HOH . W 5 HOH B 14 714 2016 HOH HOH . W 5 HOH B 15 715 2013 HOH HOH . W 5 HOH B 16 716 2017 HOH HOH . X 5 HOH C 1 701 2015 HOH HOH . X 5 HOH C 2 702 2002 HOH HOH . X 5 HOH C 3 703 2013 HOH HOH . X 5 HOH C 4 704 2019 HOH HOH . X 5 HOH C 5 705 2003 HOH HOH . X 5 HOH C 6 706 2009 HOH HOH . X 5 HOH C 7 707 2001 HOH HOH . X 5 HOH C 8 708 2017 HOH HOH . X 5 HOH C 9 709 2006 HOH HOH . X 5 HOH C 10 710 2016 HOH HOH . X 5 HOH C 11 711 2005 HOH HOH . X 5 HOH C 12 712 2008 HOH HOH . X 5 HOH C 13 713 2014 HOH HOH . X 5 HOH C 14 714 2007 HOH HOH . X 5 HOH C 15 715 2012 HOH HOH . X 5 HOH C 16 716 2018 HOH HOH . X 5 HOH C 17 717 2004 HOH HOH . X 5 HOH C 18 718 2010 HOH HOH . X 5 HOH C 19 719 2011 HOH HOH . Y 5 HOH D 1 701 2009 HOH HOH . Y 5 HOH D 2 702 2007 HOH HOH . Y 5 HOH D 3 703 2018 HOH HOH . Y 5 HOH D 4 704 2010 HOH HOH . Y 5 HOH D 5 705 2008 HOH HOH . Y 5 HOH D 6 706 2012 HOH HOH . Y 5 HOH D 7 707 2005 HOH HOH . Y 5 HOH D 8 708 2001 HOH HOH . Y 5 HOH D 9 709 2019 HOH HOH . Y 5 HOH D 10 710 2004 HOH HOH . Y 5 HOH D 11 711 2016 HOH HOH . Y 5 HOH D 12 712 2020 HOH HOH . Y 5 HOH D 13 713 2006 HOH HOH . Y 5 HOH D 14 714 2011 HOH HOH . Y 5 HOH D 15 715 2003 HOH HOH . Y 5 HOH D 16 716 2014 HOH HOH . Y 5 HOH D 17 717 2015 HOH HOH . Y 5 HOH D 18 718 2002 HOH HOH . Y 5 HOH D 19 719 2017 HOH HOH . Y 5 HOH D 20 720 2013 HOH HOH . Y 5 HOH D 21 721 2021 HOH HOH . Z 5 HOH E 1 701 2011 HOH HOH . Z 5 HOH E 2 702 2010 HOH HOH . Z 5 HOH E 3 703 2013 HOH HOH . Z 5 HOH E 4 704 2012 HOH HOH . Z 5 HOH E 5 705 2002 HOH HOH . Z 5 HOH E 6 706 2006 HOH HOH . Z 5 HOH E 7 707 2004 HOH HOH . Z 5 HOH E 8 708 2015 HOH HOH . Z 5 HOH E 9 709 2001 HOH HOH . Z 5 HOH E 10 710 2005 HOH HOH . Z 5 HOH E 11 711 2003 HOH HOH . Z 5 HOH E 12 712 2009 HOH HOH . Z 5 HOH E 13 713 2008 HOH HOH . Z 5 HOH E 14 714 2014 HOH HOH . Z 5 HOH E 15 715 2007 HOH HOH . AA 5 HOH F 1 701 2018 HOH HOH . AA 5 HOH F 2 702 2015 HOH HOH . AA 5 HOH F 3 703 2009 HOH HOH . AA 5 HOH F 4 704 2005 HOH HOH . AA 5 HOH F 5 705 2016 HOH HOH . AA 5 HOH F 6 706 2007 HOH HOH . AA 5 HOH F 7 707 2004 HOH HOH . AA 5 HOH F 8 708 2002 HOH HOH . AA 5 HOH F 9 709 2017 HOH HOH . AA 5 HOH F 10 710 2003 HOH HOH . AA 5 HOH F 11 711 2008 HOH HOH . AA 5 HOH F 12 712 2012 HOH HOH . AA 5 HOH F 13 713 2006 HOH HOH . AA 5 HOH F 14 714 2014 HOH HOH . AA 5 HOH F 15 715 2011 HOH HOH . AA 5 HOH F 16 716 2010 HOH HOH . AA 5 HOH F 17 717 2019 HOH HOH . AA 5 HOH F 18 718 2001 HOH HOH . AA 5 HOH F 19 719 2013 HOH HOH . AA 5 HOH F 20 720 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . O 4 38.74 45.532 -56.597 1 48.16 ? C1 EDO 606 A 1 HETATM 2 O O1 EDO . . . O 4 37.653 46.345 -57.061 1 47.87 ? O1 EDO 606 A 1 HETATM 3 C C2 EDO . . . O 4 40.065 46.267 -56.784 1 47.98 ? C2 EDO 606 A 1 HETATM 4 O O2 EDO . . . O 4 40.992 45.861 -55.77 1 47.28 ? O2 EDO 606 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #