data_2C7W
#
_model_server_result.job_id            G_j9PNH-VhBrZjPTVuotYg 
_model_server_result.datetime_utc      '2024-11-23 04:33:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c7w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1108}' 
#
_entry.id    2C7W 
#
_exptl.entry_id    2C7W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2C7W 
_cell.length_a            120.806 
_cell.length_b            120.806 
_cell.length_c            39.826 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C7W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 26 1_555 A SG CYS 59 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 42 A CYS 51 1_555 B SG CYS 51 B CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf3 A SG CYS 48 A CYS 57 1_555 A SG CYS 92 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 51 A CYS 60 1_555 B SG CYS 42 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf5 A SG CYS 52 A CYS 61 1_555 A SG CYS 94 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 B SG CYS 17 B CYS 26 1_555 B SG CYS 59 B CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 48 B CYS 57 1_555 B SG CYS 92 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 B SG CYS 52 B CYS 61 1_555 B SG CYS 94 B CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 221 n n 
C1 H11 MPD sing 222 n n 
C1 H12 MPD sing 223 n n 
C1 H13 MPD sing 224 n n 
C2 O2 MPD sing 225 n n 
C2 CM MPD sing 226 n n 
C2 C3 MPD sing 227 n n 
O2 HO2 MPD sing 228 n n 
CM HM1 MPD sing 229 n n 
CM HM2 MPD sing 230 n n 
CM HM3 MPD sing 231 n n 
C3 C4 MPD sing 232 n n 
C3 H31 MPD sing 233 n n 
C3 H32 MPD sing 234 n n 
C4 O4 MPD sing 235 n n 
C4 C5 MPD sing 236 n n 
C4 H4 MPD sing 237 n n 
O4 HO4 MPD sing 238 n n 
C5 H51 MPD sing 239 n n 
C5 H52 MPD sing 240 n n 
C5 H53 MPD sing 241 n n 
#
_atom_sites.entry_id                     2C7W 
_atom_sites.fract_transf_matrix[1][1]    0.008278 
_atom_sites.fract_transf_matrix[1][2]    0.004779 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MPD B 1 1108 1108 MPD MPD . 
D 3 HOH A 1 2001 2001 HOH HOH . 
D 3 HOH A 2 2002 2002 HOH HOH . 
D 3 HOH A 3 2003 2003 HOH HOH . 
D 3 HOH A 4 2004 2004 HOH HOH . 
D 3 HOH A 5 2005 2005 HOH HOH . 
D 3 HOH A 6 2006 2006 HOH HOH . 
D 3 HOH A 7 2007 2007 HOH HOH . 
D 3 HOH A 8 2008 2008 HOH HOH . 
D 3 HOH A 9 2009 2009 HOH HOH . 
D 3 HOH A 10 2010 2010 HOH HOH . 
D 3 HOH A 11 2011 2011 HOH HOH . 
D 3 HOH A 12 2012 2012 HOH HOH . 
D 3 HOH A 13 2013 2013 HOH HOH . 
D 3 HOH A 14 2014 2014 HOH HOH . 
D 3 HOH A 15 2015 2015 HOH HOH . 
D 3 HOH A 16 2016 2016 HOH HOH . 
D 3 HOH A 17 2017 2017 HOH HOH . 
D 3 HOH A 18 2018 2018 HOH HOH . 
D 3 HOH A 19 2019 2019 HOH HOH . 
D 3 HOH A 20 2020 2020 HOH HOH . 
D 3 HOH A 21 2021 2021 HOH HOH . 
D 3 HOH A 22 2022 2022 HOH HOH . 
D 3 HOH A 23 2023 2023 HOH HOH . 
D 3 HOH A 24 2024 2024 HOH HOH . 
D 3 HOH A 25 2025 2025 HOH HOH . 
D 3 HOH A 26 2026 2026 HOH HOH . 
D 3 HOH A 27 2027 2027 HOH HOH . 
D 3 HOH A 28 2028 2028 HOH HOH . 
D 3 HOH A 29 2029 2029 HOH HOH . 
D 3 HOH A 30 2030 2030 HOH HOH . 
D 3 HOH A 31 2031 2031 HOH HOH . 
D 3 HOH A 32 2032 2032 HOH HOH . 
D 3 HOH A 33 2033 2033 HOH HOH . 
D 3 HOH A 34 2034 2034 HOH HOH . 
D 3 HOH A 35 2035 2035 HOH HOH . 
D 3 HOH A 36 2036 2036 HOH HOH . 
D 3 HOH A 37 2037 2037 HOH HOH . 
D 3 HOH A 38 2038 2038 HOH HOH . 
D 3 HOH A 39 2039 2039 HOH HOH . 
D 3 HOH A 40 2040 2040 HOH HOH . 
E 3 HOH B 1 2001 2001 HOH HOH . 
E 3 HOH B 2 2002 2002 HOH HOH . 
E 3 HOH B 3 2003 2003 HOH HOH . 
E 3 HOH B 4 2004 2004 HOH HOH . 
E 3 HOH B 5 2005 2005 HOH HOH . 
E 3 HOH B 6 2006 2006 HOH HOH . 
E 3 HOH B 7 2007 2007 HOH HOH . 
E 3 HOH B 8 2008 2008 HOH HOH . 
E 3 HOH B 9 2009 2009 HOH HOH . 
E 3 HOH B 10 2010 2010 HOH HOH . 
E 3 HOH B 11 2011 2011 HOH HOH . 
E 3 HOH B 12 2012 2012 HOH HOH . 
E 3 HOH B 13 2013 2013 HOH HOH . 
E 3 HOH B 14 2014 2014 HOH HOH . 
E 3 HOH B 15 2015 2015 HOH HOH . 
E 3 HOH B 16 2016 2016 HOH HOH . 
E 3 HOH B 17 2017 2017 HOH HOH . 
E 3 HOH B 18 2018 2018 HOH HOH . 
E 3 HOH B 19 2019 2019 HOH HOH . 
E 3 HOH B 20 2020 2020 HOH HOH . 
E 3 HOH B 21 2021 2021 HOH HOH . 
E 3 HOH B 22 2022 2022 HOH HOH . 
E 3 HOH B 23 2023 2023 HOH HOH . 
E 3 HOH B 24 2024 2024 HOH HOH . 
E 3 HOH B 25 2025 2025 HOH HOH . 
E 3 HOH B 26 2026 2026 HOH HOH . 
E 3 HOH B 27 2027 2027 HOH HOH . 
E 3 HOH B 28 2028 2028 HOH HOH . 
E 3 HOH B 29 2029 2029 HOH HOH . 
E 3 HOH B 30 2030 2030 HOH HOH . 
E 3 HOH B 31 2031 2031 HOH HOH . 
E 3 HOH B 32 2032 2032 HOH HOH . 
E 3 HOH B 33 2033 2033 HOH HOH . 
E 3 HOH B 34 2034 2034 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . C 2 -37.934 -48.873 10.97 1 55.78 ? C1 MPD 1108 B 1 
HETATM 2 C C2 MPD . . . C 2 -38.346 -48.976 12.444 1 55.67 ? C2 MPD 1108 B 1 
HETATM 3 O O2 MPD . . . C 2 -39.398 -48.041 12.727 1 56.52 ? O2 MPD 1108 B 1 
HETATM 4 C CM MPD . . . C 2 -38.855 -50.381 12.728 1 54.62 ? CM MPD 1108 B 1 
HETATM 5 C C3 MPD . . . C 2 -37.126 -48.684 13.369 1 56.04 ? C3 MPD 1108 B 1 
HETATM 6 C C4 MPD . . . C 2 -36.513 -47.275 13.153 1 54.68 ? C4 MPD 1108 B 1 
HETATM 7 O O4 MPD . . . C 2 -37.481 -46.244 13.363 1 54.22 ? O4 MPD 1108 B 1 
HETATM 8 C C5 MPD . . . C 2 -35.331 -47.083 14.105 1 54.44 ? C5 MPD 1108 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#