data_2C88 # _model_server_result.job_id 2-V3SOPy0kadxPvyuxFIKQ _model_server_result.datetime_utc '2024-10-12 15:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1995}' # _entry.id 2C88 # _exptl.entry_id 2C88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C88 _cell.length_a 71.529 _cell.length_b 71.529 _cell.length_c 590.216 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 A OE2 GLU 439 A GLU 439 1_555 D MG MG . A MG 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc2 A O LYS 712 A LYS 712 1_555 E NA NA . A NA 1998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc3 A OE1 GLU 732 A GLU 732 1_555 E NA NA . A NA 1998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc4 C O1A ACP . A ACP 1996 1_555 D MG MG . A MG 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc5 C O2B ACP . A ACP 1996 1_555 D MG MG . A MG 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.892 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 339 n n C34 H341 TG1 sing 340 n n C34 H342 TG1 sing 341 n n C34 H343 TG1 sing 342 n n C11 C7 TG1 sing 343 n n C11 C12 TG1 sing 344 n n C11 O11 TG1 sing 345 n n C7 C8 TG1 sing 346 n n C7 C6 TG1 sing 347 n n C7 O6 TG1 sing 348 n n C8 C9 TG1 sing 349 n n C8 O7 TG1 sing 350 n n C8 HC8 TG1 sing 351 n n C9 C10 TG1 sing 352 n n C9 HC91 TG1 sing 353 n n C9 HC92 TG1 sing 354 n n C10 C1 TG1 sing 355 n n C10 C31 TG1 sing 356 n n C10 O9 TG1 sing 357 n n C1 C2 TG1 sing 358 n n C1 C5 TG1 sing 359 n n C1 HC1 TG1 sing 360 n n C2 O1 TG1 sing 361 n n C2 C3 TG1 sing 362 n n C2 HC2 TG1 sing 363 n n O1 C13 TG1 sing 364 n n C13 O2 TG1 doub 365 n n C13 C14 TG1 sing 366 n n C14 C15 TG1 sing 367 n n C14 H141 TG1 sing 368 n n C14 H142 TG1 sing 369 n n C15 C16 TG1 sing 370 n n C15 H151 TG1 sing 371 n n C15 H152 TG1 sing 372 n n C16 C17 TG1 sing 373 n n C16 H161 TG1 sing 374 n n C16 H162 TG1 sing 375 n n C17 C18 TG1 sing 376 n n C17 H171 TG1 sing 377 n n C17 H172 TG1 sing 378 n n C18 C19 TG1 sing 379 n n C18 H181 TG1 sing 380 n n C18 H182 TG1 sing 381 n n C19 C20 TG1 sing 382 n n C19 H191 TG1 sing 383 n n C19 H192 TG1 sing 384 n n C20 H201 TG1 sing 385 n n C20 H202 TG1 sing 386 n n C20 H203 TG1 sing 387 n n C3 O3 TG1 sing 388 n n C3 C4 TG1 sing 389 n n C3 HC3 TG1 sing 390 n n O3 C21 TG1 sing 391 n n C21 O4 TG1 doub 392 n n C21 C22 TG1 sing 393 n n C22 C23 TG1 sing 394 n n C22 C24 TG1 doub 395 z n C23 H231 TG1 sing 396 n n C23 H232 TG1 sing 397 n n C23 H233 TG1 sing 398 n n C24 C25 TG1 sing 399 n n C24 H24 TG1 sing 400 n n C25 H251 TG1 sing 401 n n C25 H252 TG1 sing 402 n n C25 H253 TG1 sing 403 n n C4 C26 TG1 sing 404 n n C4 C5 TG1 doub 405 n n C26 H261 TG1 sing 406 n n C26 H262 TG1 sing 407 n n C26 H263 TG1 sing 408 n n C5 C6 TG1 sing 409 n n C6 O5 TG1 sing 410 n n C6 HC6 TG1 sing 411 n n O5 C12 TG1 sing 412 n n C12 O12 TG1 doub 413 n n C31 H311 TG1 sing 414 n n C31 H312 TG1 sing 415 n n C31 H313 TG1 sing 416 n n O9 C32 TG1 sing 417 n n C32 O10 TG1 doub 418 n n C32 C33 TG1 sing 419 n n C33 H331 TG1 sing 420 n n C33 H332 TG1 sing 421 n n C33 H333 TG1 sing 422 n n O7 C27 TG1 sing 423 n n C27 O8 TG1 doub 424 n n C27 C28 TG1 sing 425 n n C28 C29 TG1 sing 426 n n C28 H281 TG1 sing 427 n n C28 H282 TG1 sing 428 n n C29 C30 TG1 sing 429 n n C29 H291 TG1 sing 430 n n C29 H292 TG1 sing 431 n n C30 H301 TG1 sing 432 n n C30 H302 TG1 sing 433 n n C30 H303 TG1 sing 434 n n O6 HO6 TG1 sing 435 n n O11 HO11 TG1 sing 436 n n # _atom_sites.entry_id 2C88 _atom_sites.fract_transf_matrix[1][1] 0.01398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01398 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG1 A 1 1995 1995 TG1 TG1 . C 3 ACP A 1 1996 1996 ACP ACP . D 4 MG A 1 1997 1997 MG MG . E 5 NA A 1 1998 1998 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . B 2 -4.392 10.48 90.419 1 58.6 ? C34 TG1 1995 A 1 HETATM 2 C C11 TG1 . . . B 2 -3.589 10.79 89.109 1 57.79 ? C11 TG1 1995 A 1 HETATM 3 C C7 TG1 . . . B 2 -4.468 10.62 87.822 1 57.51 ? C7 TG1 1995 A 1 HETATM 4 C C8 TG1 . . . B 2 -5.531 11.772 87.568 1 56.02 ? C8 TG1 1995 A 1 HETATM 5 C C9 TG1 . . . B 2 -6.421 11.645 86.315 1 56.58 ? C9 TG1 1995 A 1 HETATM 6 C C10 TG1 . . . B 2 -5.859 11.299 84.89 1 56.96 ? C10 TG1 1995 A 1 HETATM 7 C C1 TG1 . . . B 2 -4.903 10.005 84.657 1 58.46 ? C1 TG1 1995 A 1 HETATM 8 C C2 TG1 . . . B 2 -4.599 9.714 83.131 1 60.84 ? C2 TG1 1995 A 1 HETATM 9 O O1 TG1 . . . B 2 -5.07 8.417 82.673 1 62.77 ? O1 TG1 1995 A 1 HETATM 10 C C13 TG1 . . . B 2 -5.629 8.461 81.358 1 64.41 ? C13 TG1 1995 A 1 HETATM 11 O O2 TG1 . . . B 2 -6.075 9.455 80.79 1 63.49 ? O2 TG1 1995 A 1 HETATM 12 C C14 TG1 . . . B 2 -5.588 7.043 80.725 1 66.48 ? C14 TG1 1995 A 1 HETATM 13 C C15 TG1 . . . B 2 -4.635 6.871 79.516 1 68.35 ? C15 TG1 1995 A 1 HETATM 14 C C16 TG1 . . . B 2 -5.266 6.657 78.109 1 68.76 ? C16 TG1 1995 A 1 HETATM 15 C C17 TG1 . . . B 2 -4.634 7.552 77 1 69.12 ? C17 TG1 1995 A 1 HETATM 16 C C18 TG1 . . . B 2 -3.585 6.802 76.125 1 70.03 ? C18 TG1 1995 A 1 HETATM 17 C C19 TG1 . . . B 2 -3.867 6.757 74.621 1 69.59 ? C19 TG1 1995 A 1 HETATM 18 C C20 TG1 . . . B 2 -3.46 5.373 74.095 1 69.81 ? C20 TG1 1995 A 1 HETATM 19 C C3 TG1 . . . B 2 -3.092 9.706 82.906 1 60.67 ? C3 TG1 1995 A 1 HETATM 20 O O3 TG1 . . . B 2 -2.981 10.889 81.957 1 62.36 ? O3 TG1 1995 A 1 HETATM 21 C C21 TG1 . . . B 2 -2.33 10.786 80.782 1 63.12 ? C21 TG1 1995 A 1 HETATM 22 O O4 TG1 . . . B 2 -1.38 9.904 80.487 1 63.29 ? O4 TG1 1995 A 1 HETATM 23 C C22 TG1 . . . B 2 -2.791 11.856 79.71 1 64.62 ? C22 TG1 1995 A 1 HETATM 24 C C23 TG1 . . . B 2 -3.152 11.168 78.431 1 65.37 ? C23 TG1 1995 A 1 HETATM 25 C C24 TG1 . . . B 2 -2.906 13.177 79.746 1 63.93 ? C24 TG1 1995 A 1 HETATM 26 C C25 TG1 . . . B 2 -2.633 14.151 80.848 1 64.79 ? C25 TG1 1995 A 1 HETATM 27 C C4 TG1 . . . B 2 -2.52 9.981 84.294 1 59.77 ? C4 TG1 1995 A 1 HETATM 28 C C26 TG1 . . . B 2 -1.021 10.041 84.444 1 58.36 ? C26 TG1 1995 A 1 HETATM 29 C C5 TG1 . . . B 2 -3.488 10.145 85.256 1 58.77 ? C5 TG1 1995 A 1 HETATM 30 C C6 TG1 . . . B 2 -3.291 10.436 86.805 1 57.99 ? C6 TG1 1995 A 1 HETATM 31 O O5 TG1 . . . B 2 -2.563 9.397 87.482 1 57.11 ? O5 TG1 1995 A 1 HETATM 32 C C12 TG1 . . . B 2 -2.454 9.822 88.781 1 57.47 ? C12 TG1 1995 A 1 HETATM 33 O O12 TG1 . . . B 2 -1.558 9.522 89.572 1 56.84 ? O12 TG1 1995 A 1 HETATM 34 C C31 TG1 . . . B 2 -5.21 12.615 84.332 1 57.57 ? C31 TG1 1995 A 1 HETATM 35 O O9 TG1 . . . B 2 -7.08 11.32 84.03 1 57.61 ? O9 TG1 1995 A 1 HETATM 36 C C32 TG1 . . . B 2 -8.186 10.551 83.868 1 58.63 ? C32 TG1 1995 A 1 HETATM 37 O O10 TG1 . . . B 2 -8.203 9.358 83.629 1 60.65 ? O10 TG1 1995 A 1 HETATM 38 C C33 TG1 . . . B 2 -9.389 11.378 84.019 1 56.91 ? C33 TG1 1995 A 1 HETATM 39 O O7 TG1 . . . B 2 -4.818 13.07 87.566 1 52.65 ? O7 TG1 1995 A 1 HETATM 40 C C27 TG1 . . . B 2 -5.034 14.021 88.587 1 53.65 ? C27 TG1 1995 A 1 HETATM 41 O O8 TG1 . . . B 2 -5.775 13.942 89.562 1 54.83 ? O8 TG1 1995 A 1 HETATM 42 C C28 TG1 . . . B 2 -4.18 15.211 88.308 1 53.58 ? C28 TG1 1995 A 1 HETATM 43 C C29 TG1 . . . B 2 -2.985 15.212 89.257 1 52.84 ? C29 TG1 1995 A 1 HETATM 44 C C30 TG1 . . . B 2 -2.782 16.643 89.659 1 52.13 ? C30 TG1 1995 A 1 HETATM 45 O O6 TG1 . . . B 2 -5.19 9.322 87.844 1 58.56 ? O6 TG1 1995 A 1 HETATM 46 O O11 TG1 . . . B 2 -2.796 12.007 89.294 1 60.15 ? O11 TG1 1995 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #