data_2C8C
#
_model_server_result.job_id            J_ys6bKTOoGxwieiMgc3bg 
_model_server_result.datetime_utc      '2024-11-06 01:37:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c8c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1247}' 
#
_entry.id    2C8C 
#
_exptl.entry_id    2C8C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.74 
_cell.angle_gamma         90 
_cell.entry_id            2C8C 
_cell.length_a            106.048 
_cell.length_b            76.135 
_cell.length_c            120.432 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C8C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2C8C 
_atom_sites.fract_transf_matrix[1][1]    0.00943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002132 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 1248 1248 NAD NAD . 
F 2 NAD B 1 1248 1248 NAD NAD . 
G 2 NAD C 1 1252 1252 NAD NAD . 
H 3 ADP D 1 1247 1247 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 3 21.099 0.985 40.503 1 92.26 ? PB ADP 1247 D 1 
HETATM 2 O O1B ADP . . . H 3 20.508 1.737 41.721 1 90.52 ? O1B ADP 1247 D 1 
HETATM 3 O O2B ADP . . . H 3 22.561 1.384 40.27 1 92.47 ? O2B ADP 1247 D 1 
HETATM 4 O O3B ADP . . . H 3 20.369 1.496 39.308 1 89.92 ? O3B ADP 1247 D 1 
HETATM 5 P PA ADP . . . H 3 21.802 -1.773 41.497 1 94.18 ? PA ADP 1247 D 1 
HETATM 6 O O1A ADP . . . H 3 23.27 -1.513 41.39 1 92.46 ? O1A ADP 1247 D 1 
HETATM 7 O O2A ADP . . . H 3 21.508 -3.257 41.119 1 91.49 ? O2A ADP 1247 D 1 
HETATM 8 O O3A ADP . . . H 3 20.945 -0.653 40.618 1 92.79 ? O3A ADP 1247 D 1 
HETATM 9 O O5' ADP . . . H 3 21.251 -1.496 43.003 1 90.72 ? O5' ADP 1247 D 1 
HETATM 10 C C5' ADP . . . H 3 19.892 -1.751 43.333 1 88.85 ? C5' ADP 1247 D 1 
HETATM 11 C C4' ADP . . . H 3 19.57 -1.288 44.769 1 88.28 ? C4' ADP 1247 D 1 
HETATM 12 O O4' ADP . . . H 3 20.14 -2.094 45.807 1 87.97 ? O4' ADP 1247 D 1 
HETATM 13 C C3' ADP . . . H 3 20.024 0.137 45.079 1 87.47 ? C3' ADP 1247 D 1 
HETATM 14 O O3' ADP . . . H 3 19.012 0.789 45.831 1 86.99 ? O3' ADP 1247 D 1 
HETATM 15 C C2' ADP . . . H 3 21.363 -0.058 45.802 1 87.07 ? C2' ADP 1247 D 1 
HETATM 16 O O2' ADP . . . H 3 21.702 1.043 46.64 1 84.71 ? O2' ADP 1247 D 1 
HETATM 17 C C1' ADP . . . H 3 21.173 -1.406 46.532 1 86.12 ? C1' ADP 1247 D 1 
HETATM 18 N N9 ADP . . . H 3 22.359 -2.305 46.6 1 83.94 ? N9 ADP 1247 D 1 
HETATM 19 C C8 ADP . . . H 3 23.473 -2.329 45.778 1 83.53 ? C8 ADP 1247 D 1 
HETATM 20 N N7 ADP . . . H 3 24.298 -3.335 46.169 1 83.29 ? N7 ADP 1247 D 1 
HETATM 21 C C5 ADP . . . H 3 23.737 -3.969 47.231 1 83.08 ? C5 ADP 1247 D 1 
HETATM 22 C C6 ADP . . . H 3 24.169 -5.053 48.012 1 81.7 ? C6 ADP 1247 D 1 
HETATM 23 N N6 ADP . . . H 3 25.321 -5.665 47.748 1 78.38 ? N6 ADP 1247 D 1 
HETATM 24 N N1 ADP . . . H 3 23.354 -5.482 49.05 1 82.49 ? N1 ADP 1247 D 1 
HETATM 25 C C2 ADP . . . H 3 22.139 -4.844 49.298 1 82.65 ? C2 ADP 1247 D 1 
HETATM 26 N N3 ADP . . . H 3 21.715 -3.764 48.529 1 82.46 ? N3 ADP 1247 D 1 
HETATM 27 C C4 ADP . . . H 3 22.508 -3.334 47.506 1 83.38 ? C4 ADP 1247 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#