data_2C8C # _model_server_result.job_id 5B-P4V-7Ooac2WRPvgyO3g _model_server_result.datetime_utc '2024-11-06 01:30:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1248}' # _entry.id 2C8C # _exptl.entry_id 2C8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.74 _cell.angle_gamma 90 _cell.entry_id 2C8C _cell.length_a 106.048 _cell.length_b 76.135 _cell.length_c 120.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 266 n n PA O2A NAD sing 267 n n PA O5B NAD sing 268 n n PA O3 NAD sing 269 n n O2A HOA2 NAD sing 270 n n O5B C5B NAD sing 271 n n C5B C4B NAD sing 272 n n C5B H51A NAD sing 273 n n C5B H52A NAD sing 274 n n C4B O4B NAD sing 275 n n C4B C3B NAD sing 276 n n C4B H4B NAD sing 277 n n O4B C1B NAD sing 278 n n C3B O3B NAD sing 279 n n C3B C2B NAD sing 280 n n C3B H3B NAD sing 281 n n O3B HO3A NAD sing 282 n n C2B O2B NAD sing 283 n n C2B C1B NAD sing 284 n n C2B H2B NAD sing 285 n n O2B HO2A NAD sing 286 n n C1B N9A NAD sing 287 n n C1B H1B NAD sing 288 n n N9A C8A NAD sing 289 n y N9A C4A NAD sing 290 n y C8A N7A NAD doub 291 n y C8A H8A NAD sing 292 n n N7A C5A NAD sing 293 n y C5A C6A NAD sing 294 n y C5A C4A NAD doub 295 n y C6A N6A NAD sing 296 n n C6A N1A NAD doub 297 n y N6A H61A NAD sing 298 n n N6A H62A NAD sing 299 n n N1A C2A NAD sing 300 n y C2A N3A NAD doub 301 n y C2A H2A NAD sing 302 n n N3A C4A NAD sing 303 n y O3 PN NAD sing 304 n n PN O1N NAD doub 305 n n PN O2N NAD sing 306 n n PN O5D NAD sing 307 n n O5D C5D NAD sing 308 n n C5D C4D NAD sing 309 n n C5D H51N NAD sing 310 n n C5D H52N NAD sing 311 n n C4D O4D NAD sing 312 n n C4D C3D NAD sing 313 n n C4D H4D NAD sing 314 n n O4D C1D NAD sing 315 n n C3D O3D NAD sing 316 n n C3D C2D NAD sing 317 n n C3D H3D NAD sing 318 n n O3D HO3N NAD sing 319 n n C2D O2D NAD sing 320 n n C2D C1D NAD sing 321 n n C2D H2D NAD sing 322 n n O2D HO2N NAD sing 323 n n C1D N1N NAD sing 324 n n C1D H1D NAD sing 325 n n N1N C2N NAD sing 326 n y N1N C6N NAD doub 327 n y C2N C3N NAD doub 328 n y C2N H2N NAD sing 329 n n C3N C7N NAD sing 330 n n C3N C4N NAD sing 331 n y C7N O7N NAD doub 332 n n C7N N7N NAD sing 333 n n N7N H71N NAD sing 334 n n N7N H72N NAD sing 335 n n C4N C5N NAD doub 336 n y C4N H4N NAD sing 337 n n C5N C6N NAD sing 338 n y C5N H5N NAD sing 339 n n C6N H6N NAD sing 340 n n # _atom_sites.entry_id 2C8C _atom_sites.fract_transf_matrix[1][1] 0.00943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002132 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 1248 1248 NAD NAD . F 2 NAD B 1 1248 1248 NAD NAD . G 2 NAD C 1 1252 1252 NAD NAD . H 3 ADP D 1 1247 1247 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 37.974 38.181 35.049 0.75 47.22 ? PA NAD 1248 A 1 HETATM 2 O O1A NAD . . . E 2 39.322 37.546 34.846 0.75 41.78 ? O1A NAD 1248 A 1 HETATM 3 O O2A NAD . . . E 2 38.175 39.577 35.661 0.75 42.62 ? O2A NAD 1248 A 1 HETATM 4 O O5B NAD . . . E 2 37.07 38.115 33.672 0.75 44.63 ? O5B NAD 1248 A 1 HETATM 5 C C5B NAD . . . E 2 35.693 38.435 33.706 0.75 41.94 ? C5B NAD 1248 A 1 HETATM 6 C C4B NAD . . . E 2 35.092 38.472 32.302 0.75 42.89 ? C4B NAD 1248 A 1 HETATM 7 O O4B NAD . . . E 2 35.853 39.294 31.417 0.75 42.14 ? O4B NAD 1248 A 1 HETATM 8 C C3B NAD . . . E 2 35.068 37.087 31.68 0.75 42.98 ? C3B NAD 1248 A 1 HETATM 9 O O3B NAD . . . E 2 33.995 37.074 30.745 0.75 45.7 ? O3B NAD 1248 A 1 HETATM 10 C C2B NAD . . . E 2 36.393 36.981 30.963 0.75 41.26 ? C2B NAD 1248 A 1 HETATM 11 O O2B NAD . . . E 2 36.344 35.937 30.003 0.75 36.42 ? O2B NAD 1248 A 1 HETATM 12 C C1B NAD . . . E 2 36.521 38.454 30.474 0.75 42.78 ? C1B NAD 1248 A 1 HETATM 13 N N9A NAD . . . E 2 37.9 38.95 30.287 0.75 45.84 ? N9A NAD 1248 A 1 HETATM 14 C C8A NAD . . . E 2 39.065 38.428 30.829 0.75 47.74 ? C8A NAD 1248 A 1 HETATM 15 N N7A NAD . . . E 2 40.109 39.178 30.404 0.75 48.98 ? N7A NAD 1248 A 1 HETATM 16 C C5A NAD . . . E 2 39.625 40.169 29.592 0.75 48.14 ? C5A NAD 1248 A 1 HETATM 17 C C6A NAD . . . E 2 40.28 41.191 28.883 0.75 48.08 ? C6A NAD 1248 A 1 HETATM 18 N N6A NAD . . . E 2 41.627 41.292 28.97 0.75 43.61 ? N6A NAD 1248 A 1 HETATM 19 N N1A NAD . . . E 2 39.507 42.055 28.106 0.75 46.78 ? N1A NAD 1248 A 1 HETATM 20 C C2A NAD . . . E 2 38.135 41.911 28.057 0.75 47.08 ? C2A NAD 1248 A 1 HETATM 21 N N3A NAD . . . E 2 37.502 40.897 28.752 0.75 48.49 ? N3A NAD 1248 A 1 HETATM 22 C C4A NAD . . . E 2 38.241 40.034 29.504 0.75 47.08 ? C4A NAD 1248 A 1 HETATM 23 O O3 NAD . . . E 2 36.998 37.328 36.053 0.75 47.05 ? O3 NAD 1248 A 1 HETATM 24 P PN NAD . . . E 2 36.701 35.727 35.85 0.75 51.78 ? PN NAD 1248 A 1 HETATM 25 O O1N NAD . . . E 2 37.983 34.945 35.808 0.75 50.94 ? O1N NAD 1248 A 1 HETATM 26 O O2N NAD . . . E 2 35.615 35.435 34.872 0.75 50.24 ? O2N NAD 1248 A 1 HETATM 27 O O5D NAD . . . E 2 35.94 35.361 37.229 0.75 48.89 ? O5D NAD 1248 A 1 HETATM 28 C C5D NAD . . . E 2 36.648 35.284 38.443 0.75 45.67 ? C5D NAD 1248 A 1 HETATM 29 C C4D NAD . . . E 2 35.765 34.633 39.505 0.75 43.9 ? C4D NAD 1248 A 1 HETATM 30 O O4D NAD . . . E 2 35.834 33.234 39.314 0.75 43.46 ? O4D NAD 1248 A 1 HETATM 31 C C3D NAD . . . E 2 36.454 34.905 40.824 0.75 44.71 ? C3D NAD 1248 A 1 HETATM 32 O O3D NAD . . . E 2 35.571 34.549 41.873 0.75 51.29 ? O3D NAD 1248 A 1 HETATM 33 C C2D NAD . . . E 2 37.602 33.901 40.748 0.75 42.81 ? C2D NAD 1248 A 1 HETATM 34 O O2D NAD . . . E 2 37.901 33.358 42.004 0.75 42.47 ? O2D NAD 1248 A 1 HETATM 35 C C1D NAD . . . E 2 37.012 32.728 39.978 0.75 40.47 ? C1D NAD 1248 A 1 HETATM 36 N N1N NAD . . . E 2 37.837 31.819 39.127 0.75 37.36 ? N1N NAD 1248 A 1 HETATM 37 C C2N NAD . . . E 2 37.784 31.848 37.76 0.75 36.21 ? C2N NAD 1248 A 1 HETATM 38 C C3N NAD . . . E 2 38.526 30.935 37.025 0.75 33.52 ? C3N NAD 1248 A 1 HETATM 39 C C7N NAD . . . E 2 38.48 30.958 35.545 0.75 35.15 ? C7N NAD 1248 A 1 HETATM 40 O O7N NAD . . . E 2 39.177 29.959 34.836 0.75 37.53 ? O7N NAD 1248 A 1 HETATM 41 N N7N NAD . . . E 2 37.773 31.887 34.904 0.75 38.04 ? N7N NAD 1248 A 1 HETATM 42 C C4N NAD . . . E 2 39.302 29.967 37.652 0.75 32.71 ? C4N NAD 1248 A 1 HETATM 43 C C5N NAD . . . E 2 39.328 29.91 39.019 0.75 33.78 ? C5N NAD 1248 A 1 HETATM 44 C C6N NAD . . . E 2 38.596 30.85 39.748 0.75 37.14 ? C6N NAD 1248 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #