data_2C8C
#
_model_server_result.job_id            X3YqWvp0vatDzkrH8I7hiQ 
_model_server_result.datetime_utc      '2025-01-16 16:08:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c8c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1248}' 
#
_entry.id    2C8C 
#
_exptl.entry_id    2C8C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.74 
_cell.angle_gamma         90 
_cell.entry_id            2C8C 
_cell.length_a            106.048 
_cell.length_b            76.135 
_cell.length_c            120.432 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C8C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E 1 1 
B,F 2 1 
C,G 3 1 
D,H 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 266 n n 
PA O2A NAD sing 267 n n 
PA O5B NAD sing 268 n n 
PA O3 NAD sing 269 n n 
O2A HOA2 NAD sing 270 n n 
O5B C5B NAD sing 271 n n 
C5B C4B NAD sing 272 n n 
C5B H51A NAD sing 273 n n 
C5B H52A NAD sing 274 n n 
C4B O4B NAD sing 275 n n 
C4B C3B NAD sing 276 n n 
C4B H4B NAD sing 277 n n 
O4B C1B NAD sing 278 n n 
C3B O3B NAD sing 279 n n 
C3B C2B NAD sing 280 n n 
C3B H3B NAD sing 281 n n 
O3B HO3A NAD sing 282 n n 
C2B O2B NAD sing 283 n n 
C2B C1B NAD sing 284 n n 
C2B H2B NAD sing 285 n n 
O2B HO2A NAD sing 286 n n 
C1B N9A NAD sing 287 n n 
C1B H1B NAD sing 288 n n 
N9A C8A NAD sing 289 n y 
N9A C4A NAD sing 290 n y 
C8A N7A NAD doub 291 n y 
C8A H8A NAD sing 292 n n 
N7A C5A NAD sing 293 n y 
C5A C6A NAD sing 294 n y 
C5A C4A NAD doub 295 n y 
C6A N6A NAD sing 296 n n 
C6A N1A NAD doub 297 n y 
N6A H61A NAD sing 298 n n 
N6A H62A NAD sing 299 n n 
N1A C2A NAD sing 300 n y 
C2A N3A NAD doub 301 n y 
C2A H2A NAD sing 302 n n 
N3A C4A NAD sing 303 n y 
O3 PN NAD sing 304 n n 
PN O1N NAD doub 305 n n 
PN O2N NAD sing 306 n n 
PN O5D NAD sing 307 n n 
O5D C5D NAD sing 308 n n 
C5D C4D NAD sing 309 n n 
C5D H51N NAD sing 310 n n 
C5D H52N NAD sing 311 n n 
C4D O4D NAD sing 312 n n 
C4D C3D NAD sing 313 n n 
C4D H4D NAD sing 314 n n 
O4D C1D NAD sing 315 n n 
C3D O3D NAD sing 316 n n 
C3D C2D NAD sing 317 n n 
C3D H3D NAD sing 318 n n 
O3D HO3N NAD sing 319 n n 
C2D O2D NAD sing 320 n n 
C2D C1D NAD sing 321 n n 
C2D H2D NAD sing 322 n n 
O2D HO2N NAD sing 323 n n 
C1D N1N NAD sing 324 n n 
C1D H1D NAD sing 325 n n 
N1N C2N NAD sing 326 n y 
N1N C6N NAD doub 327 n y 
C2N C3N NAD doub 328 n y 
C2N H2N NAD sing 329 n n 
C3N C7N NAD sing 330 n n 
C3N C4N NAD sing 331 n y 
C7N O7N NAD doub 332 n n 
C7N N7N NAD sing 333 n n 
N7N H71N NAD sing 334 n n 
N7N H72N NAD sing 335 n n 
C4N C5N NAD doub 336 n y 
C4N H4N NAD sing 337 n n 
C5N C6N NAD sing 338 n y 
C5N H5N NAD sing 339 n n 
C6N H6N NAD sing 340 n n 
#
_atom_sites.entry_id                     2C8C 
_atom_sites.fract_transf_matrix[1][1]    0.00943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002132 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013135 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008513 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NAD A 1 1248 1248 NAD NAD . 
F 2 NAD B 1 1248 1248 NAD NAD . 
G 2 NAD C 1 1252 1252 NAD NAD . 
H 3 ADP D 1 1247 1247 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . F 2 22.661 4.341 2.807 1 65.03 ? PA NAD 1248 B 1 
HETATM 2 O O1A NAD . . . F 2 22.285 5.78 2.998 1 63.59 ? O1A NAD 1248 B 1 
HETATM 3 O O2A NAD . . . F 2 24.202 4.295 2.652 1 62.43 ? O2A NAD 1248 B 1 
HETATM 4 O O5B NAD . . . F 2 21.933 3.435 3.943 1 58.09 ? O5B NAD 1248 B 1 
HETATM 5 C C5B NAD . . . F 2 22.231 2.104 4.216 1 56.46 ? C5B NAD 1248 B 1 
HETATM 6 C C4B NAD . . . F 2 22.064 1.867 5.717 1 55.24 ? C4B NAD 1248 B 1 
HETATM 7 O O4B NAD . . . F 2 22.918 2.738 6.454 1 53.43 ? O4B NAD 1248 B 1 
HETATM 8 C C3B NAD . . . F 2 20.613 2.144 6.143 1 53.58 ? C3B NAD 1248 B 1 
HETATM 9 O O3B NAD . . . F 2 20.198 1.227 7.127 1 54.06 ? O3B NAD 1248 B 1 
HETATM 10 C C2B NAD . . . F 2 20.677 3.52 6.76 1 53.64 ? C2B NAD 1248 B 1 
HETATM 11 O O2B NAD . . . F 2 19.561 3.754 7.621 1 51.72 ? O2B NAD 1248 B 1 
HETATM 12 C C1B NAD . . . F 2 22.109 3.489 7.375 1 53.17 ? C1B NAD 1248 B 1 
HETATM 13 N N9A NAD . . . F 2 22.669 4.84 7.664 1 51.91 ? N9A NAD 1248 B 1 
HETATM 14 C C8A NAD . . . F 2 22.341 6.025 7.035 1 52.01 ? C8A NAD 1248 B 1 
HETATM 15 N N7A NAD . . . F 2 23.047 7.061 7.574 1 52.41 ? N7A NAD 1248 B 1 
HETATM 16 C C5A NAD . . . F 2 23.828 6.533 8.556 1 52.4 ? C5A NAD 1248 B 1 
HETATM 17 C C6A NAD . . . F 2 24.707 7.153 9.435 1 53.73 ? C6A NAD 1248 B 1 
HETATM 18 N N6A NAD . . . F 2 24.897 8.475 9.326 1 56.07 ? N6A NAD 1248 B 1 
HETATM 19 N N1A NAD . . . F 2 25.385 6.412 10.366 1 51.08 ? N1A NAD 1248 B 1 
HETATM 20 C C2A NAD . . . F 2 25.137 5.046 10.428 1 51.49 ? C2A NAD 1248 B 1 
HETATM 21 N N3A NAD . . . F 2 24.254 4.419 9.565 1 50.18 ? N3A NAD 1248 B 1 
HETATM 22 C C4A NAD . . . F 2 23.61 5.158 8.628 1 51.22 ? C4A NAD 1248 B 1 
HETATM 23 O O3 NAD . . . F 2 21.97 3.699 1.49 1 67.88 ? O3 NAD 1248 B 1 
HETATM 24 P PN NAD . . . F 2 20.361 3.801 1.25 1 72.08 ? PN NAD 1248 B 1 
HETATM 25 O O1N NAD . . . F 2 19.962 5.24 1.398 1 70.24 ? O1N NAD 1248 B 1 
HETATM 26 O O2N NAD . . . F 2 19.65 2.729 2.033 1 70.66 ? O2N NAD 1248 B 1 
HETATM 27 O O5D NAD . . . F 2 20.383 3.391 -0.3 1 71.28 ? O5D NAD 1248 B 1 
HETATM 28 C C5D NAD . . . F 2 20.807 2.08 -0.651 1 74.26 ? C5D NAD 1248 B 1 
HETATM 29 C C4D NAD . . . F 2 19.887 1.536 -1.745 1 75.17 ? C4D NAD 1248 B 1 
HETATM 30 O O4D NAD . . . F 2 18.619 2.117 -1.555 1 74.62 ? O4D NAD 1248 B 1 
HETATM 31 C C3D NAD . . . F 2 20.308 1.91 -3.17 1 75.96 ? C3D NAD 1248 B 1 
HETATM 32 O O3D NAD . . . F 2 20.12 0.758 -3.987 1 77.47 ? O3D NAD 1248 B 1 
HETATM 33 C C2D NAD . . . F 2 19.443 3.105 -3.594 1 75.36 ? C2D NAD 1248 B 1 
HETATM 34 O O2D NAD . . . F 2 18.67 2.796 -4.74 1 76.12 ? O2D NAD 1248 B 1 
HETATM 35 C C1D NAD . . . F 2 18.508 3.251 -2.423 1 73.96 ? C1D NAD 1248 B 1 
HETATM 36 N N1N NAD . . . F 2 17.518 4.272 -2.037 1 71.13 ? N1N NAD 1248 B 1 
HETATM 37 C C2N NAD . . . F 2 17.241 4.403 -0.701 1 68.71 ? C2N NAD 1248 B 1 
HETATM 38 C C3N NAD . . . F 2 16.309 5.314 -0.214 1 65.46 ? C3N NAD 1248 B 1 
HETATM 39 C C7N NAD . . . F 2 16.077 5.398 1.248 1 63.75 ? C7N NAD 1248 B 1 
HETATM 40 O O7N NAD . . . F 2 15.114 6.244 1.747 1 60.57 ? O7N NAD 1248 B 1 
HETATM 41 N N7N NAD . . . F 2 16.787 4.674 2.1 1 66.19 ? N7N NAD 1248 B 1 
HETATM 42 C C4N NAD . . . F 2 15.607 6.138 -1.089 1 66.69 ? C4N NAD 1248 B 1 
HETATM 43 C C5N NAD . . . F 2 15.869 6.009 -2.455 1 68.74 ? C5N NAD 1248 B 1 
HETATM 44 C C6N NAD . . . F 2 16.826 5.068 -2.918 1 70.1 ? C6N NAD 1248 B 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#