data_2C8C # _model_server_result.job_id ukDyq6j-L2DNy7k9hqY0kg _model_server_result.datetime_utc '2024-11-23 16:50:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c8c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1252}' # _entry.id 2C8C # _exptl.entry_id 2C8C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.74 _cell.angle_gamma 90 _cell.entry_id 2C8C _cell.length_a 106.048 _cell.length_b 76.135 _cell.length_c 120.432 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C8C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E 1 1 B,F 2 1 C,G 3 1 D,H 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 266 n n PA O2A NAD sing 267 n n PA O5B NAD sing 268 n n PA O3 NAD sing 269 n n O2A HOA2 NAD sing 270 n n O5B C5B NAD sing 271 n n C5B C4B NAD sing 272 n n C5B H51A NAD sing 273 n n C5B H52A NAD sing 274 n n C4B O4B NAD sing 275 n n C4B C3B NAD sing 276 n n C4B H4B NAD sing 277 n n O4B C1B NAD sing 278 n n C3B O3B NAD sing 279 n n C3B C2B NAD sing 280 n n C3B H3B NAD sing 281 n n O3B HO3A NAD sing 282 n n C2B O2B NAD sing 283 n n C2B C1B NAD sing 284 n n C2B H2B NAD sing 285 n n O2B HO2A NAD sing 286 n n C1B N9A NAD sing 287 n n C1B H1B NAD sing 288 n n N9A C8A NAD sing 289 n y N9A C4A NAD sing 290 n y C8A N7A NAD doub 291 n y C8A H8A NAD sing 292 n n N7A C5A NAD sing 293 n y C5A C6A NAD sing 294 n y C5A C4A NAD doub 295 n y C6A N6A NAD sing 296 n n C6A N1A NAD doub 297 n y N6A H61A NAD sing 298 n n N6A H62A NAD sing 299 n n N1A C2A NAD sing 300 n y C2A N3A NAD doub 301 n y C2A H2A NAD sing 302 n n N3A C4A NAD sing 303 n y O3 PN NAD sing 304 n n PN O1N NAD doub 305 n n PN O2N NAD sing 306 n n PN O5D NAD sing 307 n n O5D C5D NAD sing 308 n n C5D C4D NAD sing 309 n n C5D H51N NAD sing 310 n n C5D H52N NAD sing 311 n n C4D O4D NAD sing 312 n n C4D C3D NAD sing 313 n n C4D H4D NAD sing 314 n n O4D C1D NAD sing 315 n n C3D O3D NAD sing 316 n n C3D C2D NAD sing 317 n n C3D H3D NAD sing 318 n n O3D HO3N NAD sing 319 n n C2D O2D NAD sing 320 n n C2D C1D NAD sing 321 n n C2D H2D NAD sing 322 n n O2D HO2N NAD sing 323 n n C1D N1N NAD sing 324 n n C1D H1D NAD sing 325 n n N1N C2N NAD sing 326 n y N1N C6N NAD doub 327 n y C2N C3N NAD doub 328 n y C2N H2N NAD sing 329 n n C3N C7N NAD sing 330 n n C3N C4N NAD sing 331 n y C7N O7N NAD doub 332 n n C7N N7N NAD sing 333 n n N7N H71N NAD sing 334 n n N7N H72N NAD sing 335 n n C4N C5N NAD doub 336 n y C4N H4N NAD sing 337 n n C5N C6N NAD sing 338 n y C5N H5N NAD sing 339 n n C6N H6N NAD sing 340 n n # _atom_sites.entry_id 2C8C _atom_sites.fract_transf_matrix[1][1] 0.00943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002132 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013135 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 1248 1248 NAD NAD . F 2 NAD B 1 1248 1248 NAD NAD . G 2 NAD C 1 1252 1252 NAD NAD . H 3 ADP D 1 1247 1247 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 2 10.488 37.919 37.028 0.75 50.84 ? PA NAD 1252 C 1 HETATM 2 O O1A NAD . . . G 2 10.712 36.422 37.065 0.75 49.26 ? O1A NAD 1252 C 1 HETATM 3 O O2A NAD . . . G 2 11.706 38.803 37.46 0.75 46.8 ? O2A NAD 1252 C 1 HETATM 4 O O5B NAD . . . G 2 9.889 38.251 35.575 0.75 47.95 ? O5B NAD 1252 C 1 HETATM 5 C C5B NAD . . . G 2 9.219 39.483 35.427 0.75 46.24 ? C5B NAD 1252 C 1 HETATM 6 C C4B NAD . . . G 2 8.675 39.528 34.021 0.75 44.55 ? C4B NAD 1252 C 1 HETATM 7 O O4B NAD . . . G 2 9.82 39.264 33.231 0.75 44.5 ? O4B NAD 1252 C 1 HETATM 8 C C3B NAD . . . G 2 7.65 38.414 33.795 0.75 45.24 ? C3B NAD 1252 C 1 HETATM 9 O O3B NAD . . . G 2 6.634 38.781 32.87 0.75 46.89 ? O3B NAD 1252 C 1 HETATM 10 C C2B NAD . . . G 2 8.474 37.326 33.141 0.75 45.67 ? C2B NAD 1252 C 1 HETATM 11 O O2B NAD . . . G 2 7.667 36.622 32.228 0.75 44.89 ? O2B NAD 1252 C 1 HETATM 12 C C1B NAD . . . G 2 9.633 38.079 32.48 0.75 45.46 ? C1B NAD 1252 C 1 HETATM 13 N N9A NAD . . . G 2 10.904 37.332 32.389 0.75 48.84 ? N9A NAD 1252 C 1 HETATM 14 C C8A NAD . . . G 2 11.318 36.21 33.111 0.75 49.59 ? C8A NAD 1252 C 1 HETATM 15 N N7A NAD . . . G 2 12.55 35.825 32.642 0.75 50.06 ? N7A NAD 1252 C 1 HETATM 16 C C5A NAD . . . G 2 12.914 36.685 31.644 0.75 49.27 ? C5A NAD 1252 C 1 HETATM 17 C C6A NAD . . . G 2 14.058 36.763 30.873 0.75 49.44 ? C6A NAD 1252 C 1 HETATM 18 N N6A NAD . . . G 2 14.999 35.861 31.069 0.75 48.53 ? N6A NAD 1252 C 1 HETATM 19 N N1A NAD . . . G 2 14.204 37.766 29.926 0.75 51.85 ? N1A NAD 1252 C 1 HETATM 20 C C2A NAD . . . G 2 13.179 38.691 29.744 0.75 52.42 ? C2A NAD 1252 C 1 HETATM 21 N N3A NAD . . . G 2 12.02 38.633 30.525 0.75 50.73 ? N3A NAD 1252 C 1 HETATM 22 C C4A NAD . . . G 2 11.902 37.642 31.467 0.75 50.15 ? C4A NAD 1252 C 1 HETATM 23 O O3 NAD . . . G 2 9.253 38.343 37.96 0.75 47.52 ? O3 NAD 1252 C 1 HETATM 24 P PN NAD . . . G 2 7.944 37.402 38.127 0.75 51.37 ? PN NAD 1252 C 1 HETATM 25 O O1N NAD . . . G 2 8.438 36.021 38.474 0.75 46.59 ? O1N NAD 1252 C 1 HETATM 26 O O2N NAD . . . G 2 6.941 37.766 37.056 0.75 43.48 ? O2N NAD 1252 C 1 HETATM 27 O O5D NAD . . . G 2 7.165 38.011 39.438 0.75 46.33 ? O5D NAD 1252 C 1 HETATM 28 C C5D NAD . . . G 2 7.74 37.813 40.715 0.75 45.65 ? C5D NAD 1252 C 1 HETATM 29 C C4D NAD . . . G 2 6.692 38.204 41.764 0.75 45.91 ? C4D NAD 1252 C 1 HETATM 30 O O4D NAD . . . G 2 5.686 37.193 41.859 0.75 44.92 ? O4D NAD 1252 C 1 HETATM 31 C C3D NAD . . . G 2 7.302 38.248 43.149 0.75 46.42 ? C3D NAD 1252 C 1 HETATM 32 O O3D NAD . . . G 2 6.364 38.917 44.016 0.75 50.31 ? O3D NAD 1252 C 1 HETATM 33 C C2D NAD . . . G 2 7.415 36.746 43.457 0.75 46.54 ? C2D NAD 1252 C 1 HETATM 34 O O2D NAD . . . G 2 7.381 36.466 44.869 0.75 48.52 ? O2D NAD 1252 C 1 HETATM 35 C C1D NAD . . . G 2 6.13 36.214 42.807 0.75 43.15 ? C1D NAD 1252 C 1 HETATM 36 N N1N NAD . . . G 2 6.027 34.849 42.226 0.75 40.43 ? N1N NAD 1252 C 1 HETATM 37 C C2N NAD . . . G 2 5.905 34.606 40.868 0.75 38.18 ? C2N NAD 1252 C 1 HETATM 38 C C3N NAD . . . G 2 5.733 33.288 40.406 0.75 35.58 ? C3N NAD 1252 C 1 HETATM 39 C C7N NAD . . . G 2 5.605 33.011 38.942 0.75 35.4 ? C7N NAD 1252 C 1 HETATM 40 O O7N NAD . . . G 2 5.354 31.714 38.527 0.75 33.82 ? O7N NAD 1252 C 1 HETATM 41 N N7N NAD . . . G 2 5.709 33.991 38.032 0.75 36.81 ? N7N NAD 1252 C 1 HETATM 42 C C4N NAD . . . G 2 5.683 32.219 41.297 0.75 35.9 ? C4N NAD 1252 C 1 HETATM 43 C C5N NAD . . . G 2 5.807 32.475 42.658 0.75 38.22 ? C5N NAD 1252 C 1 HETATM 44 C C6N NAD . . . G 2 5.963 33.796 43.107 0.75 39.89 ? C6N NAD 1252 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #